Wall clock time and date at job start Fri Apr 10 2020 18:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48502 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47060 * 299.99487 * 3 2 1 6 6 H 1.48495 * 109.47499 * 60.00149 * 3 2 1 7 7 C 1.38807 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00203 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64785 * 359.94991 * 9 7 2 11 11 C 1.54910 * 104.83427 * 204.16704 * 10 9 7 12 12 C 1.55152 * 101.58107 * 322.99523 * 11 10 9 13 13 H 1.09004 * 110.87229 * 277.06354 * 12 11 10 14 14 C 1.53004 * 110.72306 * 153.86482 * 12 11 10 15 15 C 1.52992 * 109.47215 * 180.02562 * 14 12 11 16 16 N 1.46502 * 109.47075 * 180.02562 * 15 14 12 17 17 C 1.34780 * 120.00224 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00002 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99919 * 179.97438 * 17 16 15 20 20 H 1.09002 * 110.00041 * 40.35580 * 19 17 16 21 21 C 1.54333 * 109.98949 * 279.31837 * 19 17 16 22 22 C 1.55157 * 103.02064 * 218.66664 * 21 19 17 23 23 C 1.54913 * 101.58216 * 35.30878 * 22 21 19 24 24 N 1.47017 * 109.88199 * 161.45100 * 19 17 16 25 25 C 1.34777 * 125.64827 * 298.39576 * 24 19 17 26 26 N 1.34784 * 119.99908 * 179.71491 * 25 24 19 27 27 O 1.21579 * 119.99978 * 359.71218 * 25 24 19 28 28 C 1.47025 * 125.64914 * 179.97438 * 9 7 2 29 29 H 0.97003 * 120.00052 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.36583 * 323.00931 * 10 9 7 31 31 H 1.09005 * 110.36309 * 85.32693 * 10 9 7 32 32 H 1.08995 * 111.00388 * 204.91744 * 11 10 9 33 33 H 1.08999 * 111.00106 * 81.06528 * 11 10 9 34 34 H 1.09002 * 109.46633 * 60.02024 * 14 12 11 35 35 H 1.09005 * 109.46733 * 300.02534 * 14 12 11 36 36 H 1.08996 * 109.47619 * 59.99816 * 15 14 12 37 37 H 1.09003 * 109.47370 * 299.99206 * 15 14 12 38 38 H 0.97004 * 119.99716 * 359.97438 * 16 15 14 39 39 H 1.08998 * 110.85532 * 100.19734 * 21 19 17 40 40 H 1.09007 * 110.51630 * 336.97476 * 21 19 17 41 41 H 1.08994 * 111.00628 * 277.23022 * 22 21 19 42 42 H 1.09007 * 111.03850 * 153.39328 * 22 21 19 43 43 H 1.08997 * 110.36961 * 204.15549 * 23 22 21 44 44 H 1.08996 * 110.37146 * 81.82697 * 23 22 21 45 45 H 0.97000 * 119.99339 * 179.97438 * 26 25 24 46 46 H 0.96995 * 120.00015 * 359.72369 * 26 25 24 47 47 H 1.09001 * 109.87805 * 59.48410 * 28 9 7 48 48 H 1.09002 * 109.88058 * 298.31838 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 0.0010 11 6 -0.4016 -3.9319 0.6139 12 6 0.7783 -4.7524 0.0291 13 1 0.5476 -5.1010 -0.9775 14 6 1.1232 -5.9307 0.9421 15 6 2.2884 -6.7184 0.3399 16 7 2.6183 -7.8470 1.2137 17 6 3.6203 -8.6854 0.8825 18 8 4.2485 -8.5058 -0.1392 19 6 3.9600 -9.8460 1.7818 20 1 3.0463 -10.3017 2.1635 21 6 4.8340 -9.3634 2.9586 22 6 5.8497 -10.5225 3.1381 23 6 6.0663 -10.9759 1.6727 24 7 4.7427 -10.8431 1.0371 25 6 4.3220 -11.5195 -0.0501 26 7 5.1398 -12.4076 -0.6494 27 8 3.2048 -11.3286 -0.4902 28 6 1.9317 -3.7275 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5992 -1.7584 0.6162 31 1 -0.5276 -2.4874 -1.0173 32 1 -1.3590 -4.3325 0.2809 33 1 -0.3517 -3.8970 1.7022 34 1 0.2548 -6.5825 1.0378 35 1 1.4072 -5.5571 1.9259 36 1 3.1567 -6.0666 0.2441 37 1 2.0044 -7.0922 -0.6439 38 1 2.1160 -7.9905 2.0311 39 1 4.2344 -9.2332 3.8595 40 1 5.3474 -8.4376 2.6987 41 1 5.4227 -11.3270 3.7369 42 1 6.7803 -10.1630 3.5773 43 1 6.3995 -12.0132 1.6418 44 1 6.7910 -10.3289 1.1785 45 1 4.8368 -12.8947 -1.4317 46 1 6.0324 -12.5570 -0.3007 47 1 2.5587 -3.8506 0.8836 48 1 2.5275 -3.8647 -0.9018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753341392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:19 Heat of formation + Delta-G solvation = -41.433450 kcal Electronic energy + Delta-G solvation = -27721.707187 eV Core-core repulsion = 23812.090088 eV Total energy + Delta-G solvation = -3909.617099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95951 -39.17278 -37.85472 -37.35629 -35.10014 -33.98292 -32.99907 -31.57031 -31.03438 -29.79923 -28.80407 -26.47935 -24.90666 -24.25462 -22.48157 -21.93589 -21.29464 -20.04659 -19.95473 -19.22249 -18.58986 -17.71959 -17.00756 -16.84305 -15.93588 -15.73470 -15.61184 -15.08024 -14.84671 -14.76878 -14.49329 -13.94865 -13.68364 -13.62702 -13.38521 -13.32918 -12.81200 -12.46615 -12.21496 -12.12255 -11.84654 -11.80206 -11.63279 -11.53824 -11.39372 -11.00304 -10.86399 -10.72481 -10.48914 -10.13221 -10.08280 -9.93238 -9.92051 -9.83390 -9.70710 -9.42075 -8.99572 -8.89736 -8.60061 -6.76342 -5.60067 -3.01224 2.24691 2.65974 2.95437 3.26266 3.42648 3.48052 3.50712 3.86293 3.99661 4.15579 4.41519 4.53705 4.64377 4.71846 4.93036 5.02220 5.06877 5.19060 5.24446 5.33656 5.35424 5.37340 5.53422 5.59887 5.66872 5.72197 5.75569 5.87651 5.96676 6.09440 6.27295 6.30263 6.44457 6.45443 6.51488 6.64236 6.67240 6.70955 6.83780 7.05134 7.48788 7.58390 7.59183 7.69342 7.91606 8.22733 8.38842 8.42484 9.28171 9.89315 10.55098 11.43932 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.002201 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.827625 B =12718.276839 C =13146.636696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.115 4.115 15 C 0.119 3.881 16 N -0.726 5.726 17 C 0.507 3.493 18 O -0.527 6.527 19 C 0.138 3.862 20 H 0.097 0.903 21 C -0.122 4.122 22 C -0.129 4.129 23 C 0.098 3.902 24 N -0.617 5.617 25 C 0.730 3.270 26 N -0.864 5.864 27 O -0.583 6.583 28 C 0.140 3.860 29 H 0.250 0.750 30 H 0.105 0.895 31 H 0.010 0.990 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.415 0.585 46 H 0.395 0.605 47 H 0.022 0.978 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.474 -26.895 9.017 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.118 4.118 13 H 0.090 0.910 14 C -0.153 4.153 15 C -0.004 4.004 16 N -0.378 5.378 17 C 0.290 3.710 18 O -0.402 6.402 19 C 0.030 3.970 20 H 0.115 0.885 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.025 4.025 24 N -0.356 5.356 25 C 0.430 3.570 26 N -0.433 5.433 27 O -0.459 6.459 28 C 0.014 3.986 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.247 0.753 46 H 0.223 0.777 47 H 0.040 0.960 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.105 -26.340 7.987 29.321 hybrid contribution 0.575 0.505 0.014 0.765 sum 10.681 -25.836 8.001 29.079 Atomic orbital electron populations 1.69821 1.04870 1.24523 1.58023 1.24788 0.95739 0.97694 1.02713 0.86000 0.78655 0.83687 0.77208 1.20558 1.21800 1.21787 1.19144 0.90530 0.82567 1.42487 0.90520 1.44545 1.02043 0.99842 1.86759 1.21925 0.84679 0.92682 0.98111 1.23034 0.95911 0.98819 0.99920 1.22099 0.97488 0.93792 0.98378 0.90985 1.21777 0.96882 0.96867 0.99791 1.21481 0.98539 0.86726 0.93640 1.46001 1.35560 1.29546 1.26702 1.20739 0.80124 0.83360 0.86733 1.90703 1.51064 1.72891 1.25514 1.21334 0.96697 0.87956 0.91057 0.88515 1.22647 0.97574 0.99425 0.96404 1.22761 1.00152 0.98216 0.95544 1.22347 0.85273 1.01463 0.93379 1.47179 1.16261 1.42186 1.30021 1.15340 0.84172 0.78628 0.78857 1.42911 1.18340 1.46508 1.35507 1.90993 1.19952 1.69336 1.65639 1.21361 0.93710 0.85889 0.97617 0.93869 0.87696 0.97166 0.92501 0.92204 0.91637 0.91217 0.91072 0.91604 0.76842 0.88621 0.89672 0.90043 0.89142 0.90545 0.90995 0.75260 0.77708 0.95986 0.96306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.09 55.49 0.56 -26.98 16 2 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -16.11 3.39 -170.06 -0.58 -16.68 16 10 C 0.15 3.77 5.89 -2.53 -0.01 3.76 16 11 C -0.14 -2.64 6.53 -24.58 -0.16 -2.80 16 12 C -0.10 -1.73 2.98 -88.79 -0.26 -2.00 16 13 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 14 C -0.11 -1.57 4.72 -26.73 -0.13 -1.69 16 15 C 0.12 1.70 5.52 -4.04 -0.02 1.67 16 16 N -0.73 -8.66 5.56 -60.30 -0.33 -8.99 16 17 C 0.51 6.91 6.27 -10.98 -0.07 6.84 16 18 O -0.53 -9.63 16.14 5.56 0.09 -9.54 16 19 C 0.14 1.32 3.25 -68.10 -0.22 1.10 16 20 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.12 -0.71 6.48 -24.89 -0.16 -0.87 16 22 C -0.13 -0.50 7.09 -24.58 -0.17 -0.67 16 23 C 0.10 0.55 6.57 -2.52 -0.02 0.54 16 24 N -0.62 -6.09 2.75 -170.00 -0.47 -6.56 16 25 C 0.73 9.03 8.16 -86.91 -0.71 8.32 16 26 N -0.86 -6.55 8.83 27.63 0.24 -6.30 16 27 O -0.58 -10.05 17.00 5.30 0.09 -9.96 16 28 C 0.14 3.04 5.99 -3.06 -0.02 3.02 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.07 1.13 7.49 -51.93 -0.39 0.74 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.40 3.40 8.47 -40.82 -0.35 3.06 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 43 H 0.08 0.24 7.30 -51.93 -0.38 -0.14 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.42 2.71 8.93 -40.82 -0.36 2.34 16 46 H 0.39 1.71 7.31 -40.82 -0.30 1.41 16 47 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -39.31 382.63 -9.79 -49.09 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.92 Total: 2.37 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -2.21 Total: 10.25 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.58 Total: -65.52 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.18 Total: -19.50 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.31 -9.79 -49.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753341392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.659 kcal (2) G-P(sol) polarization free energy of solvation -39.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds