Wall clock time and date at job start Fri Apr 10 2020 18:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00277 * 2 1 4 4 H 1.48504 * 109.46811 * 269.99952 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.99322 * 3 2 1 6 6 H 1.48498 * 109.47512 * 149.99806 * 3 2 1 7 7 C 1.38955 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99906 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99720 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99766 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99990 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99655 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46655 * 180.02562 * 12 10 9 14 14 C 1.47958 * 111.00613 * 70.63831 * 13 12 10 15 15 C 1.53931 * 86.18418 * 137.58078 * 14 13 12 16 16 C 1.47961 * 111.00147 * 170.00077 * 13 12 10 17 17 H 1.09005 * 113.85778 * 336.74747 * 16 13 12 18 18 C 1.52997 * 113.76223 * 108.09221 * 16 13 12 19 19 N 1.46499 * 109.47555 * 301.07173 * 18 16 13 20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 16 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18 23 23 N 1.46902 * 109.47027 * 179.72353 * 22 20 19 24 24 C 1.48527 * 110.99964 * 52.60122 * 23 22 20 25 25 C 1.54940 * 103.22612 * 159.71987 * 24 23 22 26 26 C 1.54591 * 102.91912 * 322.58612 * 25 24 23 27 27 C 1.47895 * 110.99712 * 170.00079 * 23 22 20 28 28 H 0.96996 * 119.99670 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00014 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47380 * 60.00082 * 12 10 9 31 31 H 1.08995 * 109.47243 * 299.99201 * 12 10 9 32 32 H 1.09001 * 113.75558 * 23.26252 * 14 13 12 33 33 H 1.08997 * 113.85752 * 251.91825 * 14 13 12 34 34 H 1.08999 * 113.73535 * 221.92243 * 15 14 13 35 35 H 1.09005 * 113.73265 * 90.63683 * 15 14 13 36 36 H 1.08998 * 109.47382 * 181.06734 * 18 16 13 37 37 H 1.09002 * 109.47216 * 61.07171 * 18 16 13 38 38 H 0.97000 * 119.99484 * 359.97438 * 19 18 16 39 39 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 40 40 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 41 41 H 1.09004 * 110.66790 * 278.15335 * 24 23 22 42 42 H 1.09002 * 110.67104 * 41.28679 * 24 23 22 43 43 H 1.09001 * 110.72384 * 204.22684 * 25 24 23 44 44 H 1.09008 * 110.87348 * 81.01651 * 25 24 23 45 45 H 1.08998 * 110.31091 * 263.03465 * 26 25 24 46 46 H 1.09004 * 110.39075 * 140.91663 * 26 25 24 47 47 H 1.09003 * 109.92105 * 333.50504 * 27 23 22 48 48 H 1.08999 * 109.92304 * 94.60534 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 7 6.0503 -3.7556 0.0014 14 6 5.7964 -4.4071 -1.3025 15 6 7.2153 -4.9894 -1.1718 16 6 7.5098 -3.8020 -0.2374 17 1 7.9004 -2.9242 -0.7523 18 6 8.3254 -4.1794 1.0009 19 7 8.0690 -3.2098 2.0687 20 6 8.6836 -3.3420 3.2609 21 8 9.4486 -4.2640 3.4497 22 6 8.4151 -2.3481 4.3614 23 7 9.1946 -2.7133 5.5519 24 6 10.6307 -2.8872 5.2150 25 6 11.3372 -2.7356 6.5856 26 6 10.5109 -1.6287 7.2798 27 6 9.1458 -1.6391 6.5672 28 1 -0.4849 0.8400 -0.0004 29 1 3.8649 -0.3634 0.0007 30 1 5.9234 -1.8572 0.8927 31 1 5.9247 -1.8565 -0.8873 32 1 5.6839 -3.7058 -2.1293 33 1 5.0084 -5.1597 -1.2733 34 1 7.7854 -4.9687 -2.1006 35 1 7.2477 -5.9583 -0.6734 36 1 9.3867 -4.1741 0.7524 37 1 8.0359 -5.1751 1.3370 38 1 7.4574 -2.4722 1.9175 39 1 8.7047 -1.3512 4.0292 40 1 7.3530 -2.3553 4.6062 41 1 10.8105 -3.8777 4.7969 42 1 10.9606 -2.1112 4.5243 43 1 12.3718 -2.4191 6.4533 44 1 11.2892 -3.6656 7.1523 45 1 10.9955 -0.6604 7.1551 46 1 10.3866 -1.8552 8.3388 47 1 8.9724 -0.6780 6.0831 48 1 8.3507 -1.8420 7.2847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754503179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:22 Heat of formation + Delta-G solvation = -15.484322 kcal Electronic energy + Delta-G solvation = -27721.181018 eV Core-core repulsion = 23812.689157 eV Total energy + Delta-G solvation = -3908.491861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.54256 -39.89076 -38.29752 -37.88384 -34.62679 -34.00708 -32.59359 -31.78694 -30.86702 -29.03751 -28.93405 -26.35713 -25.94995 -23.58241 -23.19653 -21.54546 -21.06212 -20.60883 -19.60896 -19.45444 -18.41607 -17.37577 -16.60490 -16.30309 -16.16943 -15.84871 -15.50071 -15.28967 -15.02510 -14.87794 -14.33462 -14.12580 -13.94275 -13.68851 -13.37749 -13.20172 -12.88187 -12.62804 -12.52945 -12.42017 -12.25622 -12.04591 -11.74921 -11.72303 -11.54753 -11.46883 -11.24989 -11.15576 -10.88437 -10.83948 -10.71203 -10.65900 -10.02932 -9.70211 -9.62517 -9.13116 -8.83891 -8.62894 -8.42226 -8.23741 -6.36329 -3.88060 2.54710 2.91340 2.95704 3.00495 3.09716 3.64125 3.74764 3.87134 4.04349 4.34147 4.41993 4.47560 4.62977 4.68198 4.69309 4.72299 4.91940 4.97227 5.05121 5.12316 5.17611 5.27608 5.29817 5.32005 5.33049 5.43478 5.47567 5.55597 5.59408 5.60978 5.69535 5.77863 5.78358 5.84356 5.93105 5.99051 6.00642 6.18803 6.36701 6.49782 6.65066 6.66826 7.03872 7.40229 7.51840 8.08101 8.15381 8.53676 8.89471 9.36104 9.76061 10.76782 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.003012 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.480937 B = 9292.393141 C =11367.609488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.452 3.548 11 O -0.557 6.557 12 C 0.007 3.993 13 N -0.445 5.445 14 C 0.020 3.980 15 C -0.136 4.136 16 C 0.006 3.994 17 H 0.083 0.917 18 C 0.145 3.855 19 N -0.722 5.722 20 C 0.515 3.485 21 O -0.530 6.530 22 C 0.025 3.975 23 N -0.501 5.501 24 C 0.031 3.969 25 C -0.126 4.126 26 C -0.131 4.131 27 C 0.033 3.967 28 H 0.274 0.726 29 H 0.369 0.631 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.400 0.600 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.035 0.965 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.322 -0.404 5.527 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.237 3.763 11 O -0.438 6.438 12 C -0.125 4.125 13 N -0.168 5.168 14 C -0.109 4.109 15 C -0.174 4.174 16 C -0.104 4.104 17 H 0.100 0.900 18 C 0.021 3.979 19 N -0.374 5.374 20 C 0.301 3.699 21 O -0.407 6.407 22 C -0.107 4.107 23 N -0.225 5.225 24 C -0.096 4.096 25 C -0.164 4.164 26 C -0.169 4.169 27 C -0.095 4.095 28 H 0.084 0.916 29 H 0.202 0.798 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 22.716 -2.411 6.461 23.739 hybrid contribution 0.634 3.326 -1.124 3.568 sum 23.350 0.915 5.337 23.970 Atomic orbital electron populations 1.69621 1.05638 1.27531 1.49193 1.25045 0.95491 0.97960 0.97656 0.86675 0.79739 0.84116 0.78836 1.19671 1.20117 1.19577 1.19423 0.79163 0.96635 1.48146 0.86273 1.42216 1.07569 1.06052 1.67190 1.19515 0.87770 0.84663 0.84345 1.90579 1.69194 1.30827 1.53249 1.22538 0.96478 0.92155 1.01376 1.68466 1.03472 1.13219 1.31631 1.23706 0.97346 0.99065 0.90747 1.23383 0.97004 0.98167 0.98852 1.23855 0.91450 0.99449 0.95648 0.89959 1.21247 0.98299 0.93172 0.85137 1.45910 1.47411 1.30974 1.13155 1.20415 0.80301 0.86387 0.82842 1.90626 1.35969 1.33245 1.80841 1.22257 1.01618 0.96392 0.90411 1.64675 1.09790 1.39830 1.08235 1.23528 0.86584 1.03483 0.96001 1.22526 0.98427 0.99117 0.96353 1.22393 0.95147 0.99149 1.00246 1.22948 0.98465 0.92909 0.95162 0.91564 0.79809 0.89843 0.92576 0.91465 0.88410 0.90822 0.88776 0.91260 0.90606 0.76547 0.91872 0.87329 0.86975 0.94665 0.91288 0.90689 0.91640 0.90956 0.93698 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 13.96 55.50 0.77 -24.56 16 2 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 3 Si 0.88 18.80 27.74 -169.99 -4.71 14.09 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 7 C -0.30 -8.43 10.16 -14.93 -0.15 -8.59 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.59 -13.54 5.09 -10.96 -0.06 -13.60 16 10 C 0.45 9.82 7.59 -10.99 -0.08 9.74 16 11 O -0.56 -14.54 15.13 5.55 0.08 -14.45 16 12 C 0.01 0.10 5.11 -4.98 -0.03 0.08 16 13 N -0.44 -6.47 5.63 -232.13 -1.31 -7.77 16 14 C 0.02 0.27 6.76 -2.77 -0.02 0.26 16 15 C -0.14 -1.38 7.84 -25.80 -0.20 -1.58 16 16 C 0.01 0.06 3.40 -66.66 -0.23 -0.16 16 17 H 0.08 0.75 7.80 -51.93 -0.40 0.35 16 18 C 0.15 1.58 5.80 -4.04 -0.02 1.56 16 19 N -0.72 -8.02 5.50 -60.29 -0.33 -8.36 16 20 C 0.51 6.38 7.54 -10.98 -0.08 6.30 16 21 O -0.53 -8.09 13.52 5.55 0.08 -8.02 16 22 C 0.02 0.26 5.52 -4.97 -0.03 0.23 16 23 N -0.50 -5.58 5.26 -231.89 -1.22 -6.80 16 24 C 0.03 0.33 5.30 -1.90 -0.01 0.32 16 25 C -0.13 -1.07 7.06 -24.87 -0.18 -1.24 16 26 C -0.13 -1.00 6.93 -25.38 -0.18 -1.17 16 27 C 0.03 0.29 6.69 -2.76 -0.02 0.27 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.37 7.35 5.76 -40.82 -0.24 7.12 16 30 H 0.08 1.07 6.55 -51.93 -0.34 0.73 16 31 H 0.06 0.73 7.69 -51.93 -0.40 0.33 16 32 H 0.07 0.90 7.78 -51.93 -0.40 0.50 16 33 H 0.10 1.56 8.09 -51.93 -0.42 1.14 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.95 7.94 -51.93 -0.41 0.54 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.95 7.91 -51.93 -0.41 0.54 16 38 H 0.40 4.05 6.59 -40.82 -0.27 3.78 16 39 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.11 1.45 5.97 -51.93 -0.31 1.14 16 42 H 0.04 0.36 8.02 -51.93 -0.42 -0.05 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.04 0.36 7.57 -51.93 -0.39 -0.03 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -34.01 380.09 -10.04 -44.06 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -7.76 Total: 12.65 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.32 Total: 7.03 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -2.14 Total: -61.09 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.16 Total: -22.47 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.01 -10.04 -44.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754503179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.574 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds