Wall clock time and date at job start Fri Apr 10 2020 18:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00277 * 2 1 4 4 H 1.48504 * 109.46811 * 269.99952 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.99322 * 3 2 1 6 6 H 1.48498 * 109.47512 * 149.99806 * 3 2 1 7 7 C 1.38955 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99906 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99720 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99766 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99990 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99655 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46655 * 180.02562 * 12 10 9 14 14 C 1.47958 * 111.00613 * 70.63831 * 13 12 10 15 15 C 1.53931 * 86.18418 * 137.58078 * 14 13 12 16 16 C 1.47961 * 111.00147 * 170.00077 * 13 12 10 17 17 H 1.09005 * 113.85778 * 336.74747 * 16 13 12 18 18 C 1.52997 * 113.76223 * 108.09221 * 16 13 12 19 19 N 1.46499 * 109.47555 * 301.07173 * 18 16 13 20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 16 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18 23 23 N 1.46902 * 109.47027 * 179.72353 * 22 20 19 24 24 C 1.48527 * 110.99964 * 52.60122 * 23 22 20 25 25 C 1.54940 * 103.22612 * 159.71987 * 24 23 22 26 26 C 1.54591 * 102.91912 * 322.58612 * 25 24 23 27 27 C 1.47895 * 110.99712 * 170.00079 * 23 22 20 28 28 H 0.96996 * 119.99670 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00014 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47380 * 60.00082 * 12 10 9 31 31 H 1.08995 * 109.47243 * 299.99201 * 12 10 9 32 32 H 1.09001 * 113.75558 * 23.26252 * 14 13 12 33 33 H 1.08997 * 113.85752 * 251.91825 * 14 13 12 34 34 H 1.08999 * 113.73535 * 221.92243 * 15 14 13 35 35 H 1.09005 * 113.73265 * 90.63683 * 15 14 13 36 36 H 1.08998 * 109.47382 * 181.06734 * 18 16 13 37 37 H 1.09002 * 109.47216 * 61.07171 * 18 16 13 38 38 H 0.97000 * 119.99484 * 359.97438 * 19 18 16 39 39 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 40 40 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 41 41 H 1.09004 * 110.66790 * 278.15335 * 24 23 22 42 42 H 1.09002 * 110.67104 * 41.28679 * 24 23 22 43 43 H 1.09001 * 110.72384 * 204.22684 * 25 24 23 44 44 H 1.09008 * 110.87348 * 81.01651 * 25 24 23 45 45 H 1.08998 * 110.31091 * 263.03465 * 26 25 24 46 46 H 1.09004 * 110.39075 * 140.91663 * 26 25 24 47 47 H 1.09003 * 109.92105 * 333.50504 * 27 23 22 48 48 H 1.08999 * 109.92304 * 94.60534 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 7 6.0503 -3.7556 0.0014 14 6 5.7964 -4.4071 -1.3025 15 6 7.2153 -4.9894 -1.1718 16 6 7.5098 -3.8020 -0.2374 17 1 7.9004 -2.9242 -0.7523 18 6 8.3254 -4.1794 1.0009 19 7 8.0690 -3.2098 2.0687 20 6 8.6836 -3.3420 3.2609 21 8 9.4486 -4.2640 3.4497 22 6 8.4151 -2.3481 4.3614 23 7 9.1946 -2.7133 5.5519 24 6 10.6307 -2.8872 5.2150 25 6 11.3372 -2.7356 6.5856 26 6 10.5109 -1.6287 7.2798 27 6 9.1458 -1.6391 6.5672 28 1 -0.4849 0.8400 -0.0004 29 1 3.8649 -0.3634 0.0007 30 1 5.9234 -1.8572 0.8927 31 1 5.9247 -1.8565 -0.8873 32 1 5.6839 -3.7058 -2.1293 33 1 5.0084 -5.1597 -1.2733 34 1 7.7854 -4.9687 -2.1006 35 1 7.2477 -5.9583 -0.6734 36 1 9.3867 -4.1741 0.7524 37 1 8.0359 -5.1751 1.3370 38 1 7.4574 -2.4722 1.9175 39 1 8.7047 -1.3512 4.0292 40 1 7.3530 -2.3553 4.6062 41 1 10.8105 -3.8777 4.7969 42 1 10.9606 -2.1112 4.5243 43 1 12.3718 -2.4191 6.4533 44 1 11.2892 -3.6656 7.1523 45 1 10.9955 -0.6604 7.1551 46 1 10.3866 -1.8552 8.3388 47 1 8.9724 -0.6780 6.0831 48 1 8.3507 -1.8420 7.2847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754503179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:21 Heat of formation + Delta-G solvation = -45.477627 kcal Electronic energy + Delta-G solvation = -27722.481625 eV Core-core repulsion = 23812.689157 eV Total energy + Delta-G solvation = -3909.792468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.56429 -40.87422 -39.68054 -38.97742 -36.01821 -35.53262 -33.77975 -33.33101 -32.08393 -29.85828 -29.71663 -27.59909 -27.16223 -25.12255 -24.11406 -22.32338 -21.70072 -21.53031 -21.28042 -20.52447 -20.26040 -18.23707 -17.80808 -17.43714 -17.10947 -16.93303 -16.73283 -16.33839 -16.24691 -16.13384 -15.39160 -15.37356 -15.03117 -14.79580 -14.62143 -14.42155 -14.17572 -14.00512 -13.80351 -13.34504 -13.12701 -13.10085 -12.94126 -12.79438 -12.47866 -12.43626 -12.32278 -12.20015 -11.99205 -11.91446 -11.84098 -11.72383 -11.49891 -11.44557 -10.64524 -10.41855 -10.25152 -10.04816 -9.67721 -9.38013 -8.41276 -6.02553 1.29304 1.35640 1.44849 1.62487 1.94840 2.07159 2.23171 2.63370 3.05653 3.13521 3.15712 3.57426 3.69300 3.75214 3.78485 3.95774 4.07285 4.09001 4.12815 4.26234 4.28947 4.34879 4.35232 4.42162 4.43372 4.43656 4.64642 4.67196 4.75133 4.86993 4.91459 4.95255 4.99846 5.00483 5.12669 5.21012 5.24319 5.30925 5.37944 5.53187 5.56223 5.90160 5.92118 5.96224 6.05920 6.54364 6.59279 6.88421 7.26118 7.39379 7.97227 8.76568 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.003012 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.480937 B = 9292.393141 C =11367.609488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.227 1.227 7 C -0.327 4.327 8 H 0.052 0.948 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.610 6.610 12 C 0.018 3.982 13 N -0.477 5.477 14 C 0.009 3.991 15 C -0.119 4.119 16 C 0.023 3.977 17 H 0.114 0.886 18 C 0.147 3.853 19 N -0.716 5.716 20 C 0.510 3.490 21 O -0.565 6.565 22 C 0.026 3.974 23 N -0.526 5.526 24 C 0.034 3.966 25 C -0.124 4.124 26 C -0.127 4.127 27 C 0.031 3.969 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.407 0.593 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.059 2.703 5.477 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.215 4.215 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.150 1.150 7 C -0.456 4.456 8 H 0.070 0.930 9 N -0.233 5.233 10 C 0.238 3.762 11 O -0.494 6.494 12 C -0.113 4.113 13 N -0.201 5.201 14 C -0.120 4.120 15 C -0.157 4.157 16 C -0.086 4.086 17 H 0.132 0.868 18 C 0.023 3.977 19 N -0.368 5.368 20 C 0.297 3.703 21 O -0.444 6.444 22 C -0.105 4.105 23 N -0.251 5.251 24 C -0.093 4.093 25 C -0.162 4.162 26 C -0.165 4.165 27 C -0.097 4.097 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.243 0.757 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 26.476 0.697 6.405 27.248 hybrid contribution -0.610 2.172 -1.115 2.516 sum 25.865 2.869 5.291 26.556 Atomic orbital electron populations 1.69816 1.08272 1.29250 1.50363 1.26157 0.96467 1.02843 0.96077 0.85354 0.79624 0.76520 0.79931 1.18179 1.20248 1.14961 1.18968 0.81578 0.94775 1.50327 0.93001 1.42025 1.05720 1.07573 1.67958 1.20857 0.90762 0.83313 0.81240 1.90565 1.71317 1.32837 1.54665 1.22513 0.90628 0.93595 1.04578 1.68446 1.06342 1.12958 1.32373 1.23688 0.98577 0.98909 0.90824 1.23296 0.94447 0.97804 1.00122 1.23883 0.88682 1.00585 0.95439 0.86802 1.21235 0.99133 0.92117 0.85210 1.45881 1.47046 1.30968 1.12900 1.20840 0.79743 0.86285 0.83458 1.90627 1.37554 1.34731 1.81472 1.22283 1.01731 0.96818 0.89632 1.64626 1.10019 1.41398 1.09038 1.23388 0.86902 1.01966 0.97081 1.22517 0.99276 0.99289 0.95140 1.22399 0.94305 0.99430 1.00365 1.23012 0.99179 0.92749 0.94740 0.91187 0.77447 0.86623 0.88926 0.90884 0.92140 0.87712 0.89226 0.89807 0.92910 0.75733 0.89418 0.86994 0.89798 0.94309 0.89786 0.91537 0.90164 0.90246 0.92478 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.97 13.96 21.67 0.30 -55.67 16 2 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 3 Si 0.97 37.29 27.74 68.60 1.90 39.19 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.23 -7.09 6.52 99.48 0.65 -6.44 16 7 C -0.33 -18.81 10.16 84.04 0.85 -17.96 16 8 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 9 N -0.59 -26.65 5.09 -306.98 -1.56 -28.22 16 10 C 0.45 19.43 7.59 87.66 0.67 20.10 16 11 O -0.61 -33.25 15.13 -3.06 -0.05 -33.30 16 12 C 0.02 0.50 5.11 85.56 0.44 0.94 16 13 N -0.48 -12.96 5.63 -888.34 -5.00 -17.97 16 14 C 0.01 0.24 6.76 86.40 0.58 0.82 16 15 C -0.12 -2.11 7.84 31.24 0.25 -1.86 16 16 C 0.02 0.41 3.40 45.02 0.15 0.56 16 17 H 0.11 1.39 7.80 -2.38 -0.02 1.37 16 18 C 0.15 2.85 5.80 86.38 0.50 3.35 16 19 N -0.72 -14.08 5.50 -463.06 -2.55 -16.62 16 20 C 0.51 11.88 7.54 87.66 0.66 12.54 16 21 O -0.56 -17.07 13.52 -3.04 -0.04 -17.11 16 22 C 0.03 0.49 5.52 85.56 0.47 0.96 16 23 N -0.53 -11.01 5.26 -887.58 -4.67 -15.68 16 24 C 0.03 0.69 5.30 86.65 0.46 1.15 16 25 C -0.12 -1.92 7.06 31.80 0.22 -1.69 16 26 C -0.13 -1.63 6.93 31.47 0.22 -1.41 16 27 C 0.03 0.47 6.69 86.45 0.58 1.05 16 28 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.39 14.19 5.76 -92.71 -0.53 13.65 16 30 H 0.12 2.42 6.55 -2.39 -0.02 2.40 16 31 H 0.09 1.91 7.69 -2.39 -0.02 1.89 16 32 H 0.07 1.84 7.78 -2.39 -0.02 1.82 16 33 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.69 7.94 -2.38 -0.02 1.67 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.28 7.91 -2.39 -0.02 1.26 16 38 H 0.41 6.74 6.59 -92.71 -0.61 6.13 16 39 H 0.09 1.19 7.81 -2.38 -0.02 1.17 16 40 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.08 2.20 5.97 -2.38 -0.01 2.18 16 42 H 0.04 0.74 8.02 -2.39 -0.02 0.72 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 47 H 0.06 0.74 7.57 -2.39 -0.02 0.72 16 48 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -82.42 380.09 -5.37 -87.79 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -0.23 Total: 39.50 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 6.52 Total: 18.09 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -13.48 Total: -134.16 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.09 Total: -50.41 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.90 Total: 39.19 kcal Total: -82.42 -5.37 -87.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754503179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.316 kcal (2) G-P(sol) polarization free energy of solvation -82.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds