Wall clock time and date at job start Fri Apr 10 2020 18:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48493 * 109.47161 * 240.00115 * 3 2 1 5 5 H 1.48504 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47118 * 119.99958 * 3 2 1 7 7 C 1.38813 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99967 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00231 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47314 * 184.98121 * 10 9 7 12 12 H 1.08992 * 109.87538 * 55.64825 * 11 10 9 13 13 C 1.54324 * 109.88075 * 294.62826 * 11 10 9 14 14 C 1.55157 * 102.94437 * 218.23433 * 13 11 10 15 15 C 1.54911 * 101.57876 * 35.50501 * 14 13 11 16 16 N 1.47293 * 110.00162 * 176.70891 * 11 10 9 17 17 C 1.34772 * 125.79113 * 298.42720 * 16 11 10 18 18 O 1.21284 * 120.00373 * 4.96344 * 17 16 11 19 19 C 1.50700 * 120.00031 * 184.95665 * 17 16 11 20 20 N 1.46502 * 109.47134 * 180.02562 * 19 17 16 21 21 C 1.34779 * 119.99968 * 180.02562 * 20 19 17 22 22 O 1.21589 * 119.99653 * 359.97438 * 21 20 19 23 23 N 1.34774 * 120.00006 * 179.97438 * 21 20 19 24 24 C 1.47025 * 125.64837 * 359.69296 * 23 21 20 25 25 C 1.54316 * 107.27549 * 180.96534 * 24 23 21 26 26 C 1.55159 * 102.85958 * 22.52665 * 25 24 23 27 27 C 1.47425 * 125.64924 * 179.97438 * 23 21 20 28 28 H 0.97002 * 119.99996 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99796 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46682 * 64.98047 * 10 9 7 31 31 H 1.09002 * 109.46766 * 304.98479 * 10 9 7 32 32 H 1.09002 * 110.71753 * 99.87597 * 13 11 10 33 33 H 1.08998 * 110.87493 * 336.67036 * 13 11 10 34 34 H 1.09003 * 111.00351 * 277.43502 * 14 13 11 35 35 H 1.08998 * 111.04073 * 153.59446 * 14 13 11 36 36 H 1.08997 * 110.37162 * 81.82901 * 15 14 13 37 37 H 1.08998 * 110.36613 * 204.04515 * 15 14 13 38 38 H 1.08997 * 109.47212 * 299.99935 * 19 17 16 39 39 H 1.09000 * 109.47099 * 59.99990 * 19 17 16 40 40 H 0.97000 * 120.00240 * 359.97438 * 20 19 17 41 41 H 1.09003 * 109.88071 * 300.51284 * 24 23 21 42 42 H 1.09004 * 109.88153 * 61.67520 * 24 23 21 43 43 H 1.08996 * 110.92562 * 264.11301 * 25 24 23 44 44 H 1.09003 * 110.74187 * 140.85140 * 25 24 23 45 45 H 1.09007 * 111.00189 * 206.22422 * 26 25 24 46 46 H 1.08999 * 111.03798 * 82.39467 * 26 25 24 47 47 H 1.09007 * 110.36636 * 274.67769 * 27 23 21 48 48 H 1.09002 * 110.36606 * 36.88528 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0687 -4.8169 -0.1267 12 1 0.4530 -4.6846 -1.0162 13 6 0.1720 -4.8793 1.1278 14 6 0.0194 -6.4042 1.3704 15 6 1.4141 -6.9277 0.9458 16 7 1.7975 -6.0942 -0.2082 17 6 2.6691 -6.4441 -1.1748 18 8 2.9788 -5.6429 -2.0311 19 6 3.2589 -7.8308 -1.1918 20 7 4.1697 -7.9602 -2.3319 21 6 4.8163 -9.1226 -2.5494 22 8 4.6439 -10.0637 -1.7990 23 7 5.6538 -9.2418 -3.5985 24 6 5.9484 -8.1908 -4.5835 25 6 6.9364 -8.7869 -5.6081 26 6 6.6975 -10.3138 -5.4703 27 6 6.4219 -10.4495 -3.9518 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3880 -0.0005 30 1 2.6170 -3.7545 0.9291 31 1 2.7495 -3.6764 -0.8442 32 1 -0.7975 -4.4211 0.9320 33 1 0.6588 -4.4005 1.9774 34 1 -0.7641 -6.8237 0.7393 35 1 -0.1738 -6.6157 2.4220 36 1 2.1298 -6.8028 1.7584 37 1 1.3529 -7.9758 0.6530 38 1 3.8087 -8.0031 -0.2666 39 1 2.4582 -8.5651 -1.2807 40 1 4.3070 -7.2095 -2.9307 41 1 5.0302 -7.8854 -5.0854 42 1 6.4043 -7.3344 -4.0867 43 1 7.9646 -8.5327 -5.3508 44 1 6.6977 -8.4487 -6.6165 45 1 7.5862 -10.8758 -5.7578 46 1 5.8328 -10.6288 -6.0543 47 1 7.3597 -10.4785 -3.3969 48 1 5.8346 -11.3452 -3.7498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754609622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:27 Heat of formation + Delta-G solvation = -67.596547 kcal Electronic energy + Delta-G solvation = -27680.597566 eV Core-core repulsion = 23769.845950 eV Total energy + Delta-G solvation = -3910.751616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.68372 -41.01139 -38.94827 -38.38235 -36.44825 -35.59021 -33.60099 -32.85684 -32.44452 -30.50341 -29.98168 -28.46940 -26.75322 -24.98936 -24.31968 -23.41132 -22.11972 -21.83562 -21.14909 -20.40663 -19.49581 -18.95372 -18.04013 -17.69868 -17.47902 -16.98915 -16.65661 -16.52224 -16.06012 -15.61448 -15.47437 -15.08692 -14.90152 -14.73642 -14.56699 -14.26940 -14.09849 -14.05506 -13.76991 -13.67308 -13.57928 -13.23026 -13.02799 -12.92399 -12.74871 -12.25542 -12.22546 -12.15131 -12.07320 -11.91567 -11.77897 -11.60992 -11.59049 -11.48897 -11.13954 -10.91591 -10.42612 -9.77278 -9.59837 -9.05785 -7.99000 -5.28697 1.29872 1.40382 1.44322 1.47890 1.54186 1.92875 1.98512 2.53806 2.90574 3.26787 3.34008 3.62656 3.66342 3.69947 3.79127 3.92121 4.05269 4.11317 4.22406 4.25487 4.29166 4.31000 4.34009 4.47349 4.51025 4.61632 4.71981 4.81665 4.84775 4.90941 4.92758 4.98192 5.03885 5.10415 5.12464 5.14588 5.18069 5.22555 5.33485 5.35553 5.39344 5.44715 5.91492 6.22471 6.41941 6.78398 6.94742 7.29355 7.37405 8.00718 8.28431 9.23902 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013752 B = 0.002612 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.523549 B =10715.305046 C =12469.049430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.736 5.736 10 C 0.152 3.848 11 C 0.138 3.862 12 H 0.056 0.944 13 C -0.120 4.120 14 C -0.118 4.118 15 C 0.089 3.911 16 N -0.606 5.606 17 C 0.518 3.482 18 O -0.573 6.573 19 C 0.136 3.864 20 N -0.733 5.733 21 C 0.720 3.280 22 O -0.627 6.627 23 N -0.639 5.639 24 C 0.088 3.912 25 C -0.122 4.122 26 C -0.124 4.124 27 C 0.116 3.884 28 H 0.254 0.746 29 H 0.377 0.623 30 H 0.014 0.986 31 H 0.011 0.989 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.408 0.592 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.289 -24.670 -5.923 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.380 5.380 10 C 0.025 3.975 11 C 0.034 3.966 12 H 0.075 0.925 13 C -0.158 4.158 14 C -0.156 4.156 15 C -0.032 4.032 16 N -0.339 5.339 17 C 0.307 3.693 18 O -0.452 6.452 19 C 0.008 3.992 20 N -0.391 5.391 21 C 0.422 3.578 22 O -0.508 6.508 23 N -0.377 5.377 24 C -0.035 4.035 25 C -0.160 4.160 26 C -0.161 4.161 27 C -0.007 4.007 28 H 0.063 0.937 29 H 0.210 0.790 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.246 0.754 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.127 0.873 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.477 -24.841 -5.813 27.216 hybrid contribution -0.017 1.838 -0.275 1.858 sum 9.460 -23.004 -6.088 25.607 Atomic orbital electron populations 1.69794 1.06413 1.26367 1.58932 1.25561 0.96525 1.00972 1.03203 0.85195 0.77297 0.79014 0.78139 1.20761 1.21479 1.20200 1.19498 0.91189 0.85424 1.42181 0.91579 1.42314 1.05577 1.00601 1.89503 1.20943 0.94124 0.85409 0.97046 1.21640 0.92481 0.82883 0.99575 0.92534 1.22594 0.99106 0.98656 0.95427 1.22808 0.96066 0.92563 1.04140 1.22774 0.97224 0.95887 0.87329 1.48568 1.42546 1.17445 1.25348 1.20597 0.78466 0.89823 0.80455 1.90723 1.61106 1.53658 1.39745 1.20859 0.94570 0.92718 0.91018 1.44799 1.47844 1.14608 1.31866 1.15419 0.78817 0.82546 0.81016 1.90885 1.70176 1.40025 1.49733 1.47692 1.45853 1.16853 1.27266 1.22254 1.00133 0.90690 0.90403 1.22622 0.99189 0.95138 0.99065 1.22802 1.03732 0.96606 0.93007 1.22300 0.95028 0.86542 0.96790 0.93727 0.79013 0.96803 0.97046 0.90277 0.91062 0.89486 0.86961 0.89687 0.87208 0.87295 0.86807 0.75409 0.91409 0.91564 0.89390 0.88238 0.87288 0.90411 0.91161 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.68 13.06 21.65 0.28 -59.40 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.25 -14.84 9.99 84.03 0.84 -14.00 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.74 -39.58 5.44 -343.46 -1.87 -41.45 16 10 C 0.15 6.84 5.65 86.38 0.49 7.33 16 11 C 0.14 4.77 3.01 45.29 0.14 4.90 16 12 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 13 C -0.12 -3.31 5.99 31.78 0.19 -3.12 16 14 C -0.12 -2.01 7.09 31.99 0.23 -1.78 16 15 C 0.09 1.55 6.73 86.86 0.58 2.13 16 16 N -0.61 -16.61 3.08 -787.44 -2.42 -19.03 16 17 C 0.52 15.31 7.74 87.66 0.68 15.99 16 18 O -0.57 -22.02 14.51 -3.04 -0.04 -22.07 16 19 C 0.14 3.11 5.09 85.63 0.44 3.55 16 20 N -0.73 -18.29 5.49 -482.29 -2.65 -20.93 16 21 C 0.72 19.01 8.49 179.05 1.52 20.53 16 22 O -0.63 -20.14 16.60 -4.00 -0.07 -20.21 16 23 N -0.64 -12.99 3.33 -829.72 -2.76 -15.76 16 24 C 0.09 1.32 6.14 86.73 0.53 1.85 16 25 C -0.12 -1.05 6.95 31.78 0.22 -0.83 16 26 C -0.12 -1.05 7.08 31.99 0.23 -0.82 16 27 C 0.12 1.78 6.91 86.86 0.60 2.39 16 28 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.38 20.85 7.39 -92.71 -0.68 20.17 16 30 H 0.01 0.63 8.07 -2.39 -0.02 0.61 16 31 H 0.01 0.58 6.63 -2.39 -0.02 0.57 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.15 7.81 -2.39 -0.02 2.14 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.27 7.47 -2.39 -0.02 1.25 16 38 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.11 2.22 7.95 -2.39 -0.02 2.21 16 40 H 0.41 10.42 6.42 -92.71 -0.60 9.83 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 48 H 0.07 1.18 8.03 -2.39 -0.02 1.17 16 Total: -1.00 -80.27 386.49 -0.67 -80.94 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.32 Total: 34.08 kcal Atomic # 6 Polarization: 27.30 SS G_CDS: 7.15 Total: 34.44 kcal Atomic # 7 Polarization: -147.16 SS G_CDS: -9.42 Total: -156.57 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.11 Total: -42.27 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -80.27 -0.67 -80.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754609622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.342 kcal (2) G-P(sol) polarization free energy of solvation -80.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds