Wall clock time and date at job start Fri Apr 10 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47049 * 125.40806 * 2 1 4 4 C 1.54110 * 103.86393 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.67230 * 241.34782 * 4 3 2 6 6 C 1.50701 * 110.54515 * 118.59121 * 4 3 2 7 7 O 1.21279 * 120.00227 * 264.10039 * 6 4 3 8 8 N 1.34780 * 119.99810 * 84.11239 * 6 4 3 9 9 C 1.46501 * 119.99866 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.47077 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.44715 * 299.96633 * 10 9 8 12 12 C 1.53036 * 109.46009 * 180.02562 * 10 9 8 13 13 C 1.53194 * 109.31322 * 178.61551 * 12 10 9 14 14 N 1.46928 * 108.77662 * 54.63027 * 13 12 10 15 15 C 1.36932 * 120.62779 * 126.39075 * 14 13 12 16 16 H 1.07998 * 120.00629 * 332.62875 * 15 14 13 17 17 C 1.38812 * 120.00025 * 152.62497 * 15 14 13 18 18 N 1.31619 * 120.00399 * 159.36306 * 17 15 14 19 19 Si 1.86805 * 119.99739 * 339.36442 * 17 15 14 20 20 H 1.48500 * 109.47180 * 92.92100 * 19 17 15 21 21 H 1.48504 * 109.46813 * 212.91780 * 19 17 15 22 22 H 1.48499 * 109.47237 * 332.91428 * 19 17 15 23 23 C 1.46923 * 118.73775 * 306.39472 * 14 13 12 24 24 C 1.53036 * 109.46044 * 59.93029 * 10 9 8 25 25 N 1.47054 * 103.85909 * 359.97438 * 4 3 2 26 26 C 1.33946 * 125.41000 * 179.97438 * 2 1 3 27 27 O 1.21582 * 123.04515 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47421 * 299.97359 * 1 2 3 30 30 H 1.08993 * 109.47406 * 59.97642 * 1 2 3 31 31 H 1.09002 * 110.54873 * 61.40622 * 3 2 1 32 32 H 1.09001 * 110.55165 * 298.59227 * 3 2 1 33 33 H 0.97001 * 119.99932 * 359.97438 * 8 6 4 34 34 H 1.08998 * 109.46585 * 59.99654 * 9 8 6 35 35 H 1.08999 * 109.47024 * 299.99915 * 9 8 6 36 36 H 1.09002 * 109.47295 * 300.03420 * 11 10 9 37 37 H 1.08996 * 109.47005 * 60.03653 * 11 10 9 38 38 H 1.09000 * 109.46767 * 180.02562 * 11 10 9 39 39 H 1.08997 * 109.49972 * 298.56349 * 12 10 9 40 40 H 1.08996 * 109.49886 * 58.66435 * 12 10 9 41 41 H 1.08999 * 109.58609 * 174.42618 * 13 12 10 42 42 H 1.09001 * 109.58567 * 294.84517 * 13 12 10 43 43 H 0.96998 * 120.00450 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.58509 * 293.81467 * 23 14 13 45 45 H 1.09001 * 109.58205 * 173.39483 * 23 14 13 46 46 H 1.09000 * 109.49963 * 301.33800 * 24 10 9 47 47 H 1.09001 * 109.49369 * 61.43540 * 24 10 9 48 48 H 0.97003 * 125.41174 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7504 0.6326 0.0007 5 1 4.2876 0.9463 0.8957 6 6 4.4908 1.0662 -1.2382 7 8 4.5394 0.3333 -2.2033 8 7 5.0991 2.2684 -1.2736 9 6 5.8194 2.6897 -2.4778 10 6 6.4119 4.0828 -2.2565 11 6 5.2848 5.0751 -1.9634 12 6 7.1637 4.5229 -3.5147 13 6 7.7261 5.9319 -3.3021 14 7 8.5411 5.9362 -2.0796 15 6 9.8336 6.3878 -2.1045 16 1 10.4093 6.3278 -3.0163 17 6 10.4041 6.9229 -0.9577 18 7 11.7137 6.9802 -0.8392 19 14 9.3130 7.5616 0.4175 20 1 9.0839 6.4811 1.4100 21 1 9.9768 8.7118 1.0823 22 1 8.0111 8.0000 -0.1466 23 6 7.9430 5.4468 -0.8301 24 6 7.3778 4.0434 -1.0701 25 7 3.5538 -0.8247 0.0016 26 6 2.2411 -1.0917 0.0005 27 8 1.7946 -2.2226 0.0014 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5134 0.8902 30 1 -0.3634 0.5142 -0.8897 31 1 2.1405 1.7934 0.8962 32 1 2.1406 1.7934 -0.8962 33 1 5.0601 2.8546 -0.5018 34 1 5.1303 2.7182 -3.3219 35 1 6.6217 1.9823 -2.6875 36 1 4.5960 5.1024 -2.8078 37 1 4.7489 4.7620 -1.0674 38 1 5.7065 6.0678 -1.8061 39 1 7.9822 3.8302 -3.7105 40 1 6.4801 4.5283 -4.3637 41 1 8.3449 6.2108 -4.1550 42 1 6.9050 6.6409 -3.1963 43 1 12.1123 7.3538 -0.0377 44 1 7.1397 6.1163 -0.5227 45 1 8.7051 5.4057 -0.0518 46 1 6.8466 3.7076 -0.1794 47 1 8.1943 3.3551 -1.2884 48 1 4.2621 -1.4875 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754718442.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:30 Heat of formation + Delta-G solvation = -20.067470 kcal Electronic energy + Delta-G solvation = -28579.169188 eV Core-core repulsion = 24670.478587 eV Total energy + Delta-G solvation = -3908.690601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70047 -39.93875 -38.72719 -36.53380 -35.41352 -34.44746 -33.35775 -31.38778 -30.54035 -29.92411 -27.89131 -27.41794 -26.69983 -24.46587 -23.48493 -23.00782 -21.18361 -20.90967 -20.67521 -18.53152 -18.07342 -17.95416 -16.83388 -16.56247 -16.19634 -15.74938 -15.49921 -15.25808 -14.67636 -14.55845 -14.37230 -14.32791 -13.94861 -13.91140 -13.81183 -13.73620 -13.22722 -12.90097 -12.76636 -12.57155 -12.42134 -12.28331 -11.97819 -11.88504 -11.63113 -10.98744 -10.86200 -10.72086 -10.63760 -10.56160 -10.46971 -10.13564 -9.94470 -9.74469 -9.56726 -9.48108 -9.24492 -9.00788 -8.66827 -7.01706 -5.99690 -3.35507 2.02330 2.34309 2.60343 2.97571 3.24212 3.41757 3.44130 3.51807 3.82146 4.22981 4.33844 4.46902 4.61284 4.76126 4.84879 4.86167 4.88745 4.95924 5.00604 5.11380 5.31490 5.33302 5.46449 5.48933 5.57980 5.67551 5.78220 5.80932 5.84145 5.98370 6.08133 6.15296 6.18721 6.24156 6.30474 6.33242 6.43274 6.59016 6.60751 6.63388 6.72078 6.90448 7.05682 7.21572 7.88539 7.91578 8.24302 8.28365 8.89520 9.67133 10.04711 11.16402 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.002661 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.054410 B =10521.028411 C =10784.709801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.637 5.637 3 C 0.107 3.893 4 C 0.103 3.897 5 H 0.117 0.883 6 C 0.499 3.501 7 O -0.524 6.524 8 N -0.717 5.717 9 C 0.130 3.870 10 C -0.065 4.065 11 C -0.145 4.145 12 C -0.122 4.122 13 C 0.149 3.851 14 N -0.605 5.605 15 C -0.259 4.259 16 H 0.085 0.915 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.884 3.116 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.125 3.875 24 C -0.123 4.123 25 N -0.715 5.715 26 C 0.705 3.295 27 O -0.583 6.583 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.402 0.598 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.067 0.933 48 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.528 -7.986 3.038 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.017 4.017 4 C -0.008 4.008 5 H 0.135 0.865 6 C 0.281 3.719 7 O -0.399 6.399 8 N -0.370 5.370 9 C 0.007 3.993 10 C -0.066 4.066 11 C -0.202 4.202 12 C -0.161 4.161 13 C 0.023 3.977 14 N -0.328 5.328 15 C -0.388 4.388 16 H 0.103 0.897 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.715 3.285 20 H -0.217 1.217 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.000 4.000 24 C -0.162 4.162 25 N -0.376 5.376 26 C 0.406 3.594 27 O -0.461 6.461 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.238 0.762 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.086 0.914 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -20.748 -9.022 2.402 22.752 hybrid contribution -0.007 0.609 1.220 1.363 sum -20.755 -8.413 3.622 22.686 Atomic orbital electron populations 1.21436 0.75278 1.04148 1.01456 1.46986 1.06495 1.05537 1.78668 1.22260 0.86168 0.89136 1.04160 1.21866 0.97254 0.83509 0.98148 0.86516 1.20684 0.79830 0.82043 0.89294 1.90764 1.59912 1.52973 1.36234 1.46105 1.53899 1.18133 1.18856 1.21572 0.95595 0.95899 0.86265 1.20712 0.95481 0.92674 0.97710 1.21974 0.97295 1.00434 1.00492 1.21997 0.99053 1.00170 0.94905 1.20942 0.93866 0.92770 0.90139 1.44327 1.11711 1.72870 1.03924 1.18926 0.85927 1.34634 0.99280 0.89744 1.25293 0.95381 0.99077 0.97934 1.69836 1.09141 1.47691 1.28456 0.86936 0.81082 0.78232 0.82289 1.21729 1.23247 1.19615 1.21357 0.96535 0.91833 0.90285 1.22085 0.98110 1.00322 0.95712 1.44831 1.07004 1.06125 1.79636 1.15800 0.81680 0.84651 0.77289 1.90964 1.75785 1.20890 1.58425 0.89445 0.91898 0.91987 0.88619 0.89513 0.76183 0.91514 0.91256 0.92870 0.93497 0.91027 0.91589 0.92423 0.91885 0.95689 0.92770 0.95531 0.91089 0.93210 0.91425 0.72284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.77 11.21 59.85 0.67 1.44 16 2 N -0.64 -5.73 3.36 -186.74 -0.63 -6.35 16 3 C 0.11 0.65 7.32 -3.16 -0.02 0.63 16 4 C 0.10 0.75 4.17 -68.20 -0.28 0.47 16 5 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 6 C 0.50 5.08 6.93 -10.98 -0.08 5.00 16 7 O -0.52 -7.77 16.60 5.56 0.09 -7.68 16 8 N -0.72 -6.43 4.95 -60.29 -0.30 -6.73 16 9 C 0.13 1.46 4.56 -4.04 -0.02 1.44 16 10 C -0.07 -0.81 0.53 -154.47 -0.08 -0.89 16 11 C -0.14 -1.60 7.54 37.16 0.28 -1.32 16 12 C -0.12 -1.73 4.91 -26.61 -0.13 -1.86 16 13 C 0.15 2.64 6.05 -3.71 -0.02 2.61 16 14 N -0.60 -13.23 2.77 -172.32 -0.48 -13.70 16 15 C -0.26 -6.93 10.03 -15.06 -0.15 -7.08 16 16 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.02 0.61 5.23 -17.43 -0.09 0.52 16 18 N -0.91 -27.16 13.97 55.49 0.78 -26.39 16 19 Si 0.88 21.32 24.34 -169.99 -4.14 17.19 16 20 H -0.29 -6.67 6.62 56.52 0.37 -6.29 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.27 -6.34 6.64 56.52 0.38 -5.96 16 23 C 0.13 2.43 3.73 -3.71 -0.01 2.42 16 24 C -0.12 -1.81 4.75 -26.61 -0.13 -1.94 16 25 N -0.71 -7.14 5.63 -59.33 -0.33 -7.48 16 26 C 0.71 8.70 8.60 -88.39 -0.76 7.94 16 27 O -0.58 -9.49 17.29 5.29 0.09 -9.40 16 28 H 0.09 0.68 7.52 -51.93 -0.39 0.29 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.51 7.73 -51.93 -0.40 0.11 16 33 H 0.40 2.73 6.16 -40.82 -0.25 2.48 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.41 6.86 -51.93 -0.36 0.06 16 38 H 0.07 0.96 4.98 -51.93 -0.26 0.70 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.03 0.43 6.69 -51.93 -0.35 0.08 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.03 0.50 5.63 -51.93 -0.29 0.21 16 45 H 0.07 1.57 4.49 -51.93 -0.23 1.33 16 46 H 0.05 0.59 6.82 -51.93 -0.35 0.24 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.43 4.06 8.96 -40.82 -0.37 3.70 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -36.13 366.40 -7.72 -43.86 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.50 Total: 1.80 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.83 Total: 9.36 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.96 Total: -60.65 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.18 Total: -17.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.13 -7.72 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754718442.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.789 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds