Wall clock time and date at job start Fri Apr 10 2020 18:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.47053 * 125.40694 * 2 1 4 4 C 1.54107 * 103.86198 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.55361 * 118.73532 * 4 3 2 6 6 C 1.50703 * 110.54635 * 241.40776 * 4 3 2 7 7 O 1.21280 * 120.00514 * 100.00109 * 6 4 3 8 8 N 1.34777 * 119.99857 * 279.99353 * 6 4 3 9 9 C 1.46500 * 120.00124 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.46856 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.45053 * 299.96456 * 10 9 8 12 12 C 1.53047 * 109.45539 * 180.02562 * 10 9 8 13 13 C 1.53194 * 109.30989 * 178.61387 * 12 10 9 14 14 N 1.46928 * 108.77533 * 54.63464 * 13 12 10 15 15 C 1.36943 * 120.63200 * 126.36194 * 14 13 12 16 16 H 1.07996 * 120.00187 * 332.51186 * 15 14 13 17 17 C 1.38813 * 119.99684 * 152.49896 * 15 14 13 18 18 N 1.31611 * 120.00142 * 335.03857 * 17 15 14 19 19 Si 1.86800 * 119.99591 * 155.03469 * 17 15 14 20 20 H 1.48500 * 109.47333 * 60.00024 * 19 17 15 21 21 H 1.48504 * 109.47136 * 300.00426 * 19 17 15 22 22 H 1.48494 * 109.47269 * 180.02562 * 19 17 15 23 23 C 1.46922 * 118.74014 * 306.64471 * 14 13 12 24 24 C 1.52761 * 109.01085 * 53.30497 * 23 14 13 25 25 N 1.47056 * 103.85938 * 359.97438 * 4 3 2 26 26 C 1.33941 * 125.41256 * 179.97438 * 2 1 3 27 27 O 1.21590 * 123.04231 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47235 * 89.99955 * 1 2 3 29 29 H 1.08998 * 109.47628 * 209.99994 * 1 2 3 30 30 H 1.08999 * 109.47289 * 330.00160 * 1 2 3 31 31 H 1.09002 * 110.55375 * 61.40542 * 3 2 1 32 32 H 1.09002 * 110.55317 * 298.58938 * 3 2 1 33 33 H 0.97007 * 119.99921 * 0.02562 * 8 6 4 34 34 H 1.09003 * 109.47104 * 60.00412 * 9 8 6 35 35 H 1.08997 * 109.47167 * 300.00067 * 9 8 6 36 36 H 1.09000 * 109.47282 * 300.03747 * 11 10 9 37 37 H 1.09001 * 109.47286 * 60.03822 * 11 10 9 38 38 H 1.09002 * 109.47282 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.49664 * 58.66327 * 12 10 9 40 40 H 1.09002 * 109.49342 * 298.56241 * 12 10 9 41 41 H 1.08992 * 109.58707 * 294.84527 * 13 12 10 42 42 H 1.09000 * 109.58587 * 174.41789 * 13 12 10 43 43 H 0.96996 * 120.00423 * 354.25179 * 18 17 15 44 44 H 1.08995 * 109.59171 * 173.14375 * 23 14 13 45 45 H 1.09008 * 109.58606 * 293.56943 * 23 14 13 46 46 H 1.09001 * 109.56835 * 185.55517 * 24 23 14 47 47 H 1.09004 * 109.38371 * 65.51803 * 24 23 14 48 48 H 0.97008 * 125.40952 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7503 0.6326 0.0007 5 1 4.2868 0.9482 -0.8941 6 6 4.4899 1.0669 1.2399 7 8 4.6014 0.3058 2.1776 8 7 5.0274 2.3010 1.3061 9 6 5.7468 2.7230 2.5105 10 6 6.2521 4.1555 2.3271 11 6 7.1953 4.2129 1.1238 12 6 7.0041 4.5958 3.5852 13 6 7.5382 6.0176 3.3847 14 7 6.4198 6.8947 3.0121 15 6 6.1692 8.0427 3.7153 16 1 6.4539 8.1123 4.7547 17 6 5.5494 9.1170 3.0920 18 7 5.6374 9.2608 1.7867 19 14 4.5904 10.3587 4.1059 20 1 5.4956 10.9928 5.0976 21 1 3.4837 9.6686 4.8161 22 1 4.0289 11.4013 3.2099 23 6 5.5717 6.5134 1.8746 24 6 5.0631 5.0889 2.0885 25 7 3.5537 -0.8247 0.0016 26 6 2.2411 -1.0916 0.0005 27 8 1.7946 -2.2226 0.0014 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.1405 1.7935 0.8961 32 1 2.1406 1.7934 -0.8962 33 1 4.9380 2.9099 0.5562 34 1 6.5934 2.0577 2.6799 35 1 5.0752 2.6820 3.3680 36 1 8.0416 3.5473 1.2935 37 1 6.6603 3.8992 0.2275 38 1 7.5558 5.2332 0.9931 39 1 7.8369 3.9167 3.7677 40 1 6.3264 4.5788 4.4388 41 1 8.2841 6.0190 2.5900 42 1 7.9881 6.3730 4.3117 43 1 6.2028 8.6655 1.2702 44 1 4.7246 7.1958 1.8054 45 1 6.1540 6.5560 0.9541 46 1 4.5143 4.7608 1.2058 47 1 4.4034 5.0668 2.9560 48 1 4.2621 -1.4875 0.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754718443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:33 Heat of formation + Delta-G solvation = -28.616164 kcal Electronic energy + Delta-G solvation = -28594.327132 eV Core-core repulsion = 24685.265832 eV Total energy + Delta-G solvation = -3909.061300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.65473 -39.87357 -38.63934 -36.48680 -35.40360 -34.39536 -33.48272 -31.08722 -30.17792 -29.77122 -27.76684 -27.18016 -26.55118 -24.40360 -23.63042 -22.50280 -20.98855 -20.85013 -20.66253 -18.36756 -18.09914 -17.93533 -17.10000 -16.69584 -16.16072 -15.64613 -15.48583 -14.73599 -14.48177 -14.44644 -14.34078 -14.23063 -13.86206 -13.76462 -13.71420 -13.54526 -13.26327 -12.93512 -12.84936 -12.71027 -12.43279 -12.07253 -11.78721 -11.52266 -11.16302 -11.01950 -10.74294 -10.58768 -10.49460 -10.42324 -10.30481 -10.10035 -10.00042 -9.77904 -9.53945 -9.31238 -9.21086 -8.94640 -8.41778 -6.92971 -6.12212 -3.28156 2.08718 2.35885 2.65425 3.01745 3.45953 3.48742 3.55931 3.66656 3.86681 4.27156 4.38480 4.54766 4.65519 4.83663 4.92596 4.95505 5.00686 5.02435 5.20672 5.21233 5.37885 5.42684 5.53500 5.55378 5.65630 5.74477 5.87112 5.89783 5.92793 6.10120 6.19991 6.23745 6.29324 6.29587 6.40027 6.45558 6.56242 6.67480 6.75459 6.76331 6.98375 7.10409 7.13800 7.26100 7.92176 7.95733 8.28640 8.52622 9.06583 9.79385 10.23674 11.16266 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.002755 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.830563 B =10162.299983 C =11090.224587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.637 5.637 3 C 0.105 3.895 4 C 0.104 3.896 5 H 0.117 0.883 6 C 0.499 3.501 7 O -0.525 6.525 8 N -0.716 5.716 9 C 0.130 3.870 10 C -0.064 4.064 11 C -0.142 4.142 12 C -0.120 4.120 13 C 0.148 3.852 14 N -0.598 5.598 15 C -0.349 4.349 16 H 0.055 0.945 17 C -0.023 4.023 18 N -0.916 5.916 19 Si 1.062 2.938 20 H -0.293 1.293 21 H -0.294 1.294 22 H -0.286 1.286 23 C 0.151 3.849 24 C -0.124 4.124 25 N -0.715 5.715 26 C 0.705 3.295 27 O -0.583 6.583 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.403 0.597 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.268 0.732 44 H 0.078 0.922 45 H 0.019 0.981 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 -14.084 -6.682 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.376 5.376 3 C -0.020 4.020 4 C -0.007 4.007 5 H 0.135 0.865 6 C 0.281 3.719 7 O -0.401 6.401 8 N -0.369 5.369 9 C 0.007 3.993 10 C -0.065 4.065 11 C -0.199 4.199 12 C -0.160 4.160 13 C 0.022 3.978 14 N -0.322 5.322 15 C -0.478 4.478 16 H 0.073 0.927 17 C -0.225 4.225 18 N -0.556 5.556 19 Si 0.892 3.108 20 H -0.220 1.220 21 H -0.221 1.221 22 H -0.211 1.211 23 C 0.025 3.975 24 C -0.163 4.163 25 N -0.376 5.376 26 C 0.405 3.595 27 O -0.461 6.461 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.239 0.761 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.037 0.963 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -5.222 -13.817 -6.062 15.967 hybrid contribution 1.429 -1.170 -0.121 1.851 sum -3.793 -14.987 -6.183 16.650 Atomic orbital electron populations 1.21417 0.75196 1.03464 1.01980 1.47005 1.06522 1.05520 1.78594 1.22317 0.86136 0.89121 1.04391 1.21848 0.97320 0.83467 0.98067 0.86508 1.20701 0.79784 0.82358 0.89019 1.90758 1.58495 1.52848 1.37978 1.46097 1.55785 1.14816 1.20192 1.21572 0.95795 0.95463 0.86493 1.20702 0.96584 0.92284 0.96905 1.21942 0.98600 1.02991 0.96411 1.21995 0.99047 0.98872 0.96092 1.20905 0.90104 0.88734 0.98088 1.44079 1.28923 1.23341 1.35834 1.19978 1.42166 0.92051 0.93589 0.92715 1.25802 1.01531 0.97464 0.97743 1.70789 1.39921 1.38176 1.06752 0.83560 0.76511 0.75963 0.74765 1.22002 1.22093 1.21105 1.20869 0.95045 0.92046 0.89559 1.22060 0.95998 0.97921 1.00344 1.44812 1.06986 1.06097 1.79724 1.15795 0.81651 0.84653 0.77391 1.90964 1.75827 1.20913 1.58381 0.92439 0.90349 0.90680 0.89349 0.88487 0.76125 0.91647 0.91486 0.93172 0.93552 0.90952 0.92776 0.92001 0.96273 0.92740 0.92098 0.90415 0.96325 0.93412 0.92173 0.72377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.90 11.03 59.84 0.66 1.56 16 2 N -0.64 -6.23 3.36 -186.74 -0.63 -6.86 16 3 C 0.10 0.73 7.32 -3.16 -0.02 0.71 16 4 C 0.10 0.80 4.17 -68.20 -0.28 0.52 16 5 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 6 C 0.50 5.35 6.95 -10.98 -0.08 5.28 16 7 O -0.53 -8.06 16.56 5.56 0.09 -7.97 16 8 N -0.72 -6.93 4.95 -60.29 -0.30 -7.23 16 9 C 0.13 1.57 4.56 -4.04 -0.02 1.55 16 10 C -0.06 -0.87 0.53 -154.47 -0.08 -0.95 16 11 C -0.14 -1.77 7.54 37.16 0.28 -1.49 16 12 C -0.12 -1.86 4.90 -26.61 -0.13 -1.99 16 13 C 0.15 2.84 6.05 -3.71 -0.02 2.82 16 14 N -0.60 -13.80 2.86 -172.58 -0.49 -14.29 16 15 C -0.35 -9.28 9.49 -15.06 -0.14 -9.42 16 16 H 0.06 1.48 7.94 -52.49 -0.42 1.06 16 17 C -0.02 -0.64 4.68 -17.43 -0.08 -0.72 16 18 N -0.92 -26.12 12.41 55.49 0.69 -25.43 16 19 Si 1.06 24.33 29.99 -169.99 -5.10 19.23 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 C 0.15 3.12 4.20 -3.93 -0.02 3.10 16 24 C -0.12 -1.94 4.73 -26.83 -0.13 -2.06 16 25 N -0.71 -7.35 5.60 -59.33 -0.33 -7.68 16 26 C 0.70 9.05 8.60 -88.41 -0.76 8.29 16 27 O -0.58 -9.77 17.53 5.29 0.09 -9.68 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.64 7.72 -51.93 -0.40 0.24 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 3.07 6.16 -40.82 -0.25 2.82 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.47 6.86 -51.93 -0.36 0.12 16 38 H 0.07 1.09 4.99 -51.93 -0.26 0.83 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.37 6.69 -51.93 -0.35 0.02 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.27 7.64 6.71 -40.82 -0.27 7.36 16 44 H 0.08 1.87 6.30 -51.93 -0.33 1.55 16 45 H 0.02 0.39 6.43 -51.92 -0.33 0.06 16 46 H 0.05 0.61 6.82 -51.93 -0.35 0.25 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.43 4.08 8.96 -40.82 -0.37 3.72 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -35.33 372.20 -8.72 -44.05 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.53 Total: 3.03 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -0.83 Total: 7.21 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -1.06 Total: -61.49 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.18 Total: -17.64 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.10 Total: 19.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.33 -8.72 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754718443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.437 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds