Wall clock time and date at job start Fri Apr 10 2020 18:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47287 * 2 1 4 4 C 1.52998 * 109.47186 * 239.99506 * 2 1 3 5 5 N 1.46504 * 109.47014 * 185.00113 * 4 2 1 6 6 C 1.34259 * 125.75317 * 124.99550 * 5 4 2 7 7 C 1.38047 * 107.41944 * 180.02562 * 6 5 4 8 8 C 1.47428 * 126.41625 * 180.02562 * 7 6 5 9 9 O 1.21600 * 120.00379 * 327.82236 * 8 7 6 10 10 N 1.34782 * 119.99758 * 147.81962 * 8 7 6 11 11 C 1.46501 * 120.00028 * 4.00251 * 10 8 7 12 12 C 1.53007 * 109.47028 * 95.40286 * 11 10 8 13 13 O 1.42900 * 109.46758 * 66.71827 * 12 11 10 14 14 C 1.46496 * 119.99825 * 183.99911 * 10 8 7 15 15 C 1.53001 * 109.47130 * 90.00062 * 14 10 8 16 16 N 1.46500 * 109.47483 * 179.97438 * 15 14 10 17 17 C 1.36927 * 120.00186 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00183 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00213 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99983 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00442 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46720 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46904 * 120.00248 * 21 19 17 24 24 H 1.48493 * 109.47271 * 240.00411 * 21 19 17 25 25 C 1.41290 * 107.16731 * 0.02562 * 7 6 5 26 26 N 1.30453 * 108.02350 * 359.71809 * 25 7 6 27 27 H 1.09008 * 109.46818 * 60.00206 * 1 2 3 28 28 H 1.08995 * 109.47626 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47617 * 300.00723 * 1 2 3 30 30 H 1.09005 * 109.46877 * 119.99269 * 2 1 3 31 31 H 1.09005 * 109.46565 * 299.99459 * 3 2 1 32 32 H 1.08995 * 109.47383 * 59.99133 * 3 2 1 33 33 H 1.09001 * 109.47168 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47166 * 304.99852 * 4 2 1 35 35 H 1.08998 * 109.47340 * 65.00411 * 4 2 1 36 36 H 1.07999 * 126.29234 * 0.02562 * 6 5 4 37 37 H 1.08998 * 109.47089 * 215.40032 * 11 10 8 38 38 H 1.08996 * 109.46978 * 335.40427 * 11 10 8 39 39 H 1.09000 * 109.46674 * 186.71491 * 12 11 10 40 40 H 1.08996 * 109.47186 * 306.71696 * 12 11 10 41 41 H 0.96700 * 113.99352 * 180.02562 * 13 12 11 42 42 H 1.08999 * 109.47447 * 209.99804 * 14 10 8 43 43 H 1.09004 * 109.47523 * 330.00224 * 14 10 8 44 44 H 1.08994 * 109.47395 * 300.00410 * 15 14 10 45 45 H 1.09007 * 109.46846 * 60.00230 * 15 14 10 46 46 H 0.97000 * 119.99494 * 0.02562 * 16 15 14 47 47 H 0.97001 * 120.00225 * 179.97438 * 20 19 17 48 48 H 1.08005 * 125.98993 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1904 6 6 4.2092 -1.9624 -1.2868 7 6 5.5441 -1.6262 -1.1827 8 6 6.6873 -2.5557 -1.2346 9 8 6.5706 -3.6877 -0.8061 10 7 7.8619 -2.1506 -1.7569 11 6 8.0299 -0.7620 -2.1926 12 6 8.6771 0.0502 -1.0690 13 8 10.0143 -0.4080 -0.8594 14 6 8.9707 -3.0990 -1.8889 15 6 8.8937 -3.7869 -3.2534 16 7 10.0028 -4.7348 -3.3858 17 6 10.1400 -5.4724 -4.5312 18 1 9.4310 -5.3550 -5.3373 19 6 11.1906 -6.3710 -4.6564 20 7 12.0546 -6.5145 -3.6739 21 14 11.3784 -7.3767 -6.2194 22 1 10.2861 -7.0314 -7.1643 23 1 12.6897 -7.0750 -6.8476 24 1 11.3088 -8.8227 -5.8889 25 6 5.6095 -0.2246 -1.0172 26 7 4.3908 0.2406 -1.0290 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8932 -0.5137 0.8901 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6054 -1.7198 -1.2950 35 1 1.7517 -0.1585 -2.1369 36 1 3.8090 -2.9564 -1.4210 37 1 8.6680 -0.7330 -3.0758 38 1 7.0558 -0.3366 -2.4338 39 1 8.6934 1.1044 -1.3458 40 1 8.1018 -0.0758 -0.1518 41 1 10.4862 0.0633 -0.1592 42 1 9.9173 -2.5654 -1.8040 43 1 8.9039 -3.8483 -1.1001 44 1 7.9471 -4.3204 -3.3385 45 1 8.9605 -3.0376 -4.0423 46 1 10.6394 -4.8405 -2.6616 47 1 12.7885 -7.1427 -3.7612 48 1 6.5108 0.3599 -0.9052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754894514.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:39 Heat of formation + Delta-G solvation = 15.673506 kcal Electronic energy + Delta-G solvation = -27753.570165 eV Core-core repulsion = 23846.429409 eV Total energy + Delta-G solvation = -3907.140756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72354 -39.40175 -37.15754 -36.82955 -35.42819 -34.26431 -32.59233 -31.44331 -30.41078 -29.52955 -27.65918 -27.48347 -26.63040 -23.88597 -23.18687 -22.19616 -21.81852 -21.00733 -20.60418 -19.13754 -17.77741 -17.52253 -17.05234 -16.16853 -16.02463 -15.81362 -15.56055 -14.99288 -14.78984 -14.38639 -14.29498 -13.84754 -13.74004 -13.52550 -13.36615 -13.17511 -13.09484 -12.86152 -12.75758 -12.61439 -12.52539 -12.09500 -11.91176 -11.61654 -11.40226 -11.28509 -11.10077 -10.85952 -10.82433 -10.77931 -10.52012 -10.12864 -9.99673 -9.73631 -9.69740 -9.56028 -8.82000 -8.77364 -8.32358 -6.81386 -5.66333 -2.94670 1.43501 2.03413 2.07376 3.15032 3.43844 3.50185 3.55226 3.57936 3.98521 4.11584 4.21505 4.44112 4.51967 4.63933 4.69931 4.75959 4.83123 4.89763 4.99514 5.06426 5.08053 5.18699 5.23224 5.25891 5.35290 5.41493 5.49336 5.52748 5.62231 5.65427 5.74219 5.78182 5.91626 5.99647 6.08156 6.20945 6.31496 6.38870 6.60118 6.73248 6.91639 7.09694 7.31051 7.53298 7.72158 7.79703 8.47284 8.52872 9.63088 10.21479 10.56829 11.56769 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.002504 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.568276 B =11178.753053 C =12259.603051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.159 4.159 4 C 0.132 3.868 5 N -0.359 5.359 6 C 0.121 3.879 7 C -0.282 4.282 8 C 0.587 3.413 9 O -0.538 6.538 10 N -0.593 5.593 11 C 0.096 3.904 12 C 0.052 3.948 13 O -0.558 6.558 14 C 0.112 3.888 15 C 0.143 3.857 16 N -0.729 5.729 17 C -0.233 4.233 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.062 3.938 26 N -0.292 5.292 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.186 0.814 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.377 0.623 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.019 0.981 45 H 0.016 0.984 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.179 20.739 8.935 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.216 4.216 4 C 0.012 3.988 5 N -0.138 5.138 6 C -0.029 4.029 7 C -0.297 4.297 8 C 0.375 3.625 9 O -0.416 6.416 10 N -0.325 5.325 11 C -0.028 4.028 12 C -0.027 4.027 13 O -0.363 6.363 14 C -0.010 4.010 15 C 0.015 3.985 16 N -0.374 5.374 17 C -0.365 4.365 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.124 4.124 26 N -0.112 5.112 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.203 0.797 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.224 0.776 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.037 0.963 45 H 0.034 0.966 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -22.324 20.714 8.568 31.636 hybrid contribution 0.964 -0.893 -0.272 1.342 sum -21.360 19.821 8.296 30.298 Atomic orbital electron populations 1.21795 0.93839 1.02159 1.02604 1.21395 0.96189 0.97971 0.97095 1.22090 1.04275 0.94063 1.01173 1.22018 0.73617 1.03013 1.00187 1.48510 1.06837 1.04280 1.54158 1.22944 0.91033 0.92520 0.96445 1.20310 0.93583 0.94125 1.21697 1.17342 0.81632 0.86135 0.77356 1.90803 1.82973 1.20317 1.47474 1.47573 1.12930 1.10360 1.61592 1.21960 1.01678 0.81963 0.97186 1.22811 0.84481 0.96992 0.98460 1.86616 1.25646 1.63950 1.60123 1.21727 0.88274 0.91944 0.99084 1.20912 0.92178 0.91921 0.93521 1.42212 1.29785 1.46169 1.19225 1.19257 1.08240 1.14990 0.93985 0.91231 1.24747 0.98039 1.00373 0.98078 1.69681 1.17002 1.39766 1.31766 0.86097 0.77301 0.79990 0.82708 1.20635 1.21923 1.21899 1.24517 0.96211 0.93293 0.98415 1.77006 0.99086 1.10781 1.24336 0.92213 0.92347 0.91859 0.90607 0.92912 0.93116 0.89298 0.88238 0.89253 0.79697 0.89159 0.88109 0.92615 0.93325 0.77637 0.89156 0.90033 0.96275 0.96609 0.78221 0.93630 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.19 37.15 0.34 -0.26 16 2 C -0.11 -0.63 3.12 -90.62 -0.28 -0.91 16 3 C -0.16 -1.08 8.91 37.16 0.33 -0.75 16 4 C 0.13 0.79 5.94 -4.04 -0.02 0.76 16 5 N -0.36 -3.31 3.65 -60.81 -0.22 -3.53 16 6 C 0.12 1.30 11.38 -16.56 -0.19 1.11 16 7 C -0.28 -3.58 5.53 -105.07 -0.58 -4.16 16 8 C 0.59 9.64 7.61 -12.52 -0.10 9.54 16 9 O -0.54 -11.07 16.59 5.28 0.09 -10.98 16 10 N -0.59 -9.22 2.47 -174.95 -0.43 -9.65 16 11 C 0.10 1.10 5.35 -4.04 -0.02 1.08 16 12 C 0.05 0.47 6.04 37.16 0.22 0.70 16 13 O -0.56 -6.27 12.08 -35.23 -0.43 -6.69 16 14 C 0.11 2.13 5.40 -4.04 -0.02 2.11 16 15 C 0.14 3.24 6.58 -4.04 -0.03 3.22 16 16 N -0.73 -20.01 5.60 -59.91 -0.34 -20.34 16 17 C -0.23 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 20 N -0.93 -29.40 13.06 55.49 0.72 -28.67 16 21 Si 0.91 23.31 29.55 -169.99 -5.02 18.28 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 C 0.06 0.64 9.42 -16.98 -0.16 0.48 16 26 N -0.29 -3.01 9.53 30.86 0.29 -2.71 16 27 H 0.06 0.22 8.14 -51.92 -0.42 -0.21 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.78 5.35 -51.93 -0.28 0.50 16 34 H 0.10 0.39 8.06 -51.93 -0.42 -0.03 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 38 H 0.10 0.97 4.73 -51.93 -0.25 0.72 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.42 6.98 -51.93 -0.36 0.06 16 41 H 0.38 2.52 9.12 45.56 0.42 2.93 16 42 H 0.09 1.70 6.67 -51.93 -0.35 1.36 16 43 H 0.08 1.72 7.37 -51.93 -0.38 1.34 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 46 H 0.38 10.97 7.67 -40.82 -0.31 10.66 16 47 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.19 1.54 4.12 -52.48 -0.22 1.32 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -37.96 387.61 -7.01 -44.97 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.76 Total: 8.25 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.75 Total: 5.24 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: 0.03 Total: -64.91 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.34 Total: -17.67 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.96 -7.01 -44.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754894514.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.645 kcal (2) G-P(sol) polarization free energy of solvation -37.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds