Wall clock time and date at job start Fri Apr 10 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.89938 * 2 1 4 4 N 1.40084 * 108.20943 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.03889 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92158 * 359.75684 * 4 3 2 7 7 C 1.50704 * 126.12351 * 180.24078 * 6 4 3 8 8 C 1.35315 * 107.74532 * 0.38993 * 6 4 3 9 9 C 1.50703 * 126.03723 * 179.87398 * 8 6 4 10 10 C 1.53000 * 109.46912 * 269.71641 * 9 8 6 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99832 * 0.02562 * 13 11 10 15 15 C 1.53001 * 109.47201 * 89.99461 * 14 13 11 16 16 O 1.42902 * 109.46914 * 65.00033 * 15 14 13 17 17 C 1.46496 * 120.00271 * 179.97438 * 13 11 10 18 18 C 1.53001 * 109.47073 * 90.00235 * 17 13 11 19 19 N 1.46499 * 109.47396 * 180.02562 * 18 17 13 20 20 C 1.36938 * 120.00250 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99948 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00273 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99652 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47324 * 59.99833 * 24 22 20 26 26 H 1.48502 * 109.47325 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46797 * 299.99473 * 24 22 20 28 28 H 1.08994 * 109.47461 * 270.02496 * 1 2 3 29 29 H 1.08999 * 109.47336 * 30.03094 * 1 2 3 30 30 H 1.08999 * 109.46640 * 150.02648 * 1 2 3 31 31 H 1.08999 * 109.46731 * 270.17645 * 7 6 4 32 32 H 1.08995 * 109.47145 * 30.17522 * 7 6 4 33 33 H 1.09001 * 109.46833 * 150.17513 * 7 6 4 34 34 H 1.09002 * 109.47152 * 149.71413 * 9 8 6 35 35 H 1.09001 * 109.46980 * 29.71513 * 9 8 6 36 36 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 37 37 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 38 38 H 1.08996 * 109.47101 * 209.99896 * 14 13 11 39 39 H 1.09003 * 109.46885 * 329.99503 * 14 13 11 40 40 H 1.08997 * 109.47104 * 184.99967 * 15 14 13 41 41 H 1.09006 * 109.47324 * 305.00397 * 15 14 13 42 42 H 0.96696 * 113.99938 * 179.97438 * 16 15 14 43 43 H 1.08998 * 109.47205 * 209.99950 * 17 13 11 44 44 H 1.08997 * 109.47416 * 330.00811 * 17 13 11 45 45 H 1.09003 * 109.47478 * 300.00268 * 18 17 13 46 46 H 1.09006 * 109.47070 * 59.99803 * 18 17 13 47 47 H 0.96998 * 120.00034 * 359.97438 * 19 18 17 48 48 H 0.97009 * 119.99722 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6142 -0.7153 0.0064 7 6 4.8351 -1.5988 0.0142 8 6 2.3271 -1.1330 0.0006 9 6 1.8600 -2.5657 0.0013 10 6 1.7026 -3.0515 -1.4410 11 6 1.2360 -4.4845 -1.4403 12 8 1.0475 -5.0603 -0.3897 13 7 1.0273 -5.1258 -2.6071 14 6 1.2545 -4.4301 -3.8762 15 6 2.7051 -4.6349 -4.3175 16 8 2.9263 -6.0182 -4.5999 17 6 0.5743 -6.5190 -2.6065 18 6 -0.9553 -6.5579 -2.6061 19 7 -1.4084 -7.9511 -2.6048 20 6 -2.7479 -8.2355 -2.6048 21 1 -3.4703 -7.4327 -2.6053 22 6 -3.1772 -9.5555 -2.6030 23 7 -2.2967 -10.5338 -2.6019 24 14 -5.0044 -9.9434 -2.6038 25 1 -5.6332 -9.3633 -3.8175 26 1 -5.1979 -11.4158 -2.6022 27 1 -5.6348 -9.3596 -1.3925 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3632 -0.8902 -0.5134 31 1 5.1346 -1.8136 -1.0116 32 1 5.6485 -1.0899 0.5312 33 1 4.6050 -2.5318 0.5286 34 1 0.9009 -2.6350 0.5148 35 1 2.5932 -3.1867 0.5159 36 1 0.9693 -2.4305 -1.9555 37 1 2.6615 -2.9823 -1.9544 38 1 0.5835 -4.8313 -4.6357 39 1 1.0611 -3.3652 -3.7465 40 1 2.8988 -4.0456 -5.2138 41 1 3.3761 -4.3150 -3.5203 42 1 3.8270 -6.2219 -4.8865 43 1 0.9503 -7.0238 -3.4963 44 1 0.9507 -7.0231 -1.7164 45 1 -1.3314 -6.0531 -1.7162 46 1 -1.3318 -6.0538 -3.4962 47 1 -0.7595 -8.6721 -2.6047 48 1 -2.5967 -11.4564 -2.6003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754897147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:42 Heat of formation + Delta-G solvation = -12.599294 kcal Electronic energy + Delta-G solvation = -27726.411056 eV Core-core repulsion = 23818.044299 eV Total energy + Delta-G solvation = -3908.366756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64522 -39.84508 -37.21602 -35.58788 -34.40225 -34.15305 -33.63063 -31.56492 -30.58256 -29.42140 -28.34182 -27.65554 -26.90385 -24.48492 -23.32817 -22.79779 -21.27088 -20.40037 -19.49005 -18.80308 -17.85223 -17.51360 -17.07829 -16.68909 -16.12139 -15.58970 -15.31390 -14.73611 -14.58050 -14.25518 -13.95147 -13.85785 -13.62148 -13.53673 -13.31368 -13.20453 -13.03837 -12.75122 -12.65874 -12.64507 -12.47669 -12.41265 -12.15863 -11.95319 -11.58072 -11.19958 -11.09095 -10.84773 -10.81764 -10.63507 -10.52550 -10.17542 -10.07239 -9.69838 -9.53672 -9.48605 -8.77785 -8.59349 -8.39067 -6.83166 -5.67350 -2.95950 1.56970 2.43112 2.57103 2.83861 3.18848 3.50721 3.54324 3.56058 4.09255 4.32233 4.37971 4.58851 4.68979 4.69363 4.84977 4.96320 4.99903 5.00751 5.08270 5.12761 5.16451 5.25616 5.40670 5.42617 5.44718 5.46621 5.51630 5.63530 5.68453 5.76151 5.82378 5.89659 6.02885 6.06467 6.14384 6.18778 6.33680 6.46671 6.68905 6.87757 7.00815 7.06265 7.44212 7.47568 7.66984 7.77696 8.41476 8.51652 9.61957 10.19992 10.55132 11.55644 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.002601 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.553512 B =10761.880278 C =11834.175064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.087 3.913 3 N -0.298 5.298 4 N -0.480 5.480 5 H 0.436 0.564 6 C 0.089 3.911 7 C -0.095 4.095 8 C -0.230 4.230 9 C -0.025 4.025 10 C -0.132 4.132 11 C 0.506 3.494 12 O -0.532 6.532 13 N -0.600 5.600 14 C 0.107 3.893 15 C 0.058 3.942 16 O -0.561 6.561 17 C 0.112 3.888 18 C 0.143 3.857 19 N -0.730 5.730 20 C -0.236 4.236 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.376 0.624 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.021 0.979 46 H 0.015 0.985 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.194 23.301 -0.303 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 N -0.122 5.122 4 N -0.188 5.188 5 H 0.280 0.720 6 C -0.039 4.039 7 C -0.154 4.154 8 C -0.241 4.241 9 C -0.064 4.064 10 C -0.172 4.172 11 C 0.294 3.706 12 O -0.409 6.409 13 N -0.333 5.333 14 C -0.017 4.017 15 C -0.021 4.021 16 O -0.366 6.366 17 C -0.010 4.010 18 C 0.015 3.985 19 N -0.374 5.374 20 C -0.367 4.367 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.223 0.777 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.038 0.962 46 H 0.033 0.967 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.294 24.223 0.432 29.766 hybrid contribution 0.320 -0.828 -0.343 0.951 sum 17.614 23.395 0.089 29.284 Atomic orbital electron populations 1.20239 0.86583 1.03515 1.03335 1.22286 0.97021 0.90160 0.98533 1.77288 0.86461 1.22373 1.26070 1.46143 1.07291 1.04815 1.60525 0.72048 1.20901 0.97007 0.84871 1.01165 1.20501 0.92748 0.98673 1.03455 1.19761 0.91083 0.96378 1.16910 1.19605 1.02718 0.89250 0.94823 1.21723 1.02629 0.93262 0.99632 1.20712 0.77615 0.88686 0.83568 1.90733 1.51145 1.68237 1.30757 1.47837 1.66426 1.13944 1.05100 1.21679 0.95405 0.97709 0.86943 1.22698 0.97362 0.83421 0.98598 1.86611 1.35137 1.24753 1.90118 1.21682 0.95605 0.80181 1.03561 1.20912 0.91329 0.88534 0.97754 1.42203 1.04997 1.00688 1.89536 1.19167 0.83427 0.91589 1.42505 0.91317 1.24742 0.97606 0.95592 1.03177 1.69663 1.32193 0.98551 1.57889 0.86243 0.85095 0.76901 0.77809 1.21331 1.21698 1.21275 0.90283 0.90874 0.90054 0.90129 0.91147 0.89181 0.90173 0.90646 0.89117 0.89623 0.89060 0.89055 0.92938 0.93747 0.77739 0.89678 0.90187 0.96153 0.96721 0.78254 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.12 36.00 0.36 -0.29 16 2 C 0.09 0.91 7.22 -82.41 -0.59 0.31 16 3 N -0.30 -3.29 12.70 33.67 0.43 -2.87 16 4 N -0.48 -3.96 7.36 33.48 0.25 -3.71 16 5 H 0.44 2.22 8.96 -182.61 -1.64 0.58 16 6 C 0.09 0.72 7.21 -82.26 -0.59 0.13 16 7 C -0.10 -0.48 10.22 36.01 0.37 -0.12 16 8 C -0.23 -2.25 5.35 -105.05 -0.56 -2.81 16 9 C -0.03 -0.26 4.45 -27.88 -0.12 -0.38 16 10 C -0.13 -1.29 4.23 -27.88 -0.12 -1.41 16 11 C 0.51 7.33 7.67 -10.98 -0.08 7.25 16 12 O -0.53 -10.10 15.56 5.56 0.09 -10.02 16 13 N -0.60 -8.60 2.44 -173.69 -0.42 -9.02 16 14 C 0.11 1.10 5.62 -4.04 -0.02 1.07 16 15 C 0.06 0.49 7.39 37.16 0.27 0.76 16 16 O -0.56 -6.00 12.48 -35.23 -0.44 -6.44 16 17 C 0.11 2.07 5.34 -4.04 -0.02 2.05 16 18 C 0.14 3.18 6.58 -4.04 -0.03 3.15 16 19 N -0.73 -19.84 5.60 -59.91 -0.34 -20.18 16 20 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 24 Si 0.91 23.20 29.55 -169.99 -5.02 18.17 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.49 7.14 -51.93 -0.37 0.12 16 34 H 0.08 0.93 7.88 -51.93 -0.41 0.52 16 35 H 0.07 0.81 7.09 -51.93 -0.37 0.44 16 36 H 0.09 0.78 7.40 -51.93 -0.38 0.39 16 37 H 0.09 0.67 7.26 -51.93 -0.38 0.29 16 38 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 39 H 0.09 0.68 6.44 -51.93 -0.33 0.35 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.04 0.33 7.30 -51.93 -0.38 -0.05 16 42 H 0.38 2.32 9.12 45.56 0.42 2.73 16 43 H 0.08 1.57 7.11 -51.93 -0.37 1.20 16 44 H 0.08 1.65 7.42 -51.93 -0.39 1.26 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.38 10.88 7.67 -40.82 -0.31 10.57 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -38.70 396.87 -8.39 -47.09 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.25 Total: 7.50 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.39 Total: 2.05 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.64 Total: -64.34 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.35 Total: -16.45 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.70 -8.39 -47.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754897147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.494 kcal (2) G-P(sol) polarization free energy of solvation -38.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds