Wall clock time and date at job start Fri Apr 10 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.89938 * 2 1 4 4 N 1.40084 * 108.20943 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.03889 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92158 * 359.75684 * 4 3 2 7 7 C 1.50704 * 126.12351 * 180.24078 * 6 4 3 8 8 C 1.35315 * 107.74532 * 0.38993 * 6 4 3 9 9 C 1.50703 * 126.03723 * 179.87398 * 8 6 4 10 10 C 1.53000 * 109.46912 * 269.71641 * 9 8 6 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99832 * 0.02562 * 13 11 10 15 15 C 1.53001 * 109.47201 * 89.99461 * 14 13 11 16 16 O 1.42902 * 109.46914 * 65.00033 * 15 14 13 17 17 C 1.46496 * 120.00271 * 179.97438 * 13 11 10 18 18 C 1.53001 * 109.47073 * 90.00235 * 17 13 11 19 19 N 1.46499 * 109.47396 * 180.02562 * 18 17 13 20 20 C 1.36938 * 120.00250 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99948 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00273 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99652 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47324 * 59.99833 * 24 22 20 26 26 H 1.48502 * 109.47325 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46797 * 299.99473 * 24 22 20 28 28 H 1.08994 * 109.47461 * 270.02496 * 1 2 3 29 29 H 1.08999 * 109.47336 * 30.03094 * 1 2 3 30 30 H 1.08999 * 109.46640 * 150.02648 * 1 2 3 31 31 H 1.08999 * 109.46731 * 270.17645 * 7 6 4 32 32 H 1.08995 * 109.47145 * 30.17522 * 7 6 4 33 33 H 1.09001 * 109.46833 * 150.17513 * 7 6 4 34 34 H 1.09002 * 109.47152 * 149.71413 * 9 8 6 35 35 H 1.09001 * 109.46980 * 29.71513 * 9 8 6 36 36 H 1.09001 * 109.47194 * 299.99742 * 10 9 8 37 37 H 1.08992 * 109.47399 * 59.99914 * 10 9 8 38 38 H 1.08996 * 109.47101 * 209.99896 * 14 13 11 39 39 H 1.09003 * 109.46885 * 329.99503 * 14 13 11 40 40 H 1.08997 * 109.47104 * 184.99967 * 15 14 13 41 41 H 1.09006 * 109.47324 * 305.00397 * 15 14 13 42 42 H 0.96696 * 113.99938 * 179.97438 * 16 15 14 43 43 H 1.08998 * 109.47205 * 209.99950 * 17 13 11 44 44 H 1.08997 * 109.47416 * 330.00811 * 17 13 11 45 45 H 1.09003 * 109.47478 * 300.00268 * 18 17 13 46 46 H 1.09006 * 109.47070 * 59.99803 * 18 17 13 47 47 H 0.96998 * 120.00034 * 359.97438 * 19 18 17 48 48 H 0.97009 * 119.99722 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6142 -0.7153 0.0064 7 6 4.8351 -1.5988 0.0142 8 6 2.3271 -1.1330 0.0006 9 6 1.8600 -2.5657 0.0013 10 6 1.7026 -3.0515 -1.4410 11 6 1.2360 -4.4845 -1.4403 12 8 1.0475 -5.0603 -0.3897 13 7 1.0273 -5.1258 -2.6071 14 6 1.2545 -4.4301 -3.8762 15 6 2.7051 -4.6349 -4.3175 16 8 2.9263 -6.0182 -4.5999 17 6 0.5743 -6.5190 -2.6065 18 6 -0.9553 -6.5579 -2.6061 19 7 -1.4084 -7.9511 -2.6048 20 6 -2.7479 -8.2355 -2.6048 21 1 -3.4703 -7.4327 -2.6053 22 6 -3.1772 -9.5555 -2.6030 23 7 -2.2967 -10.5338 -2.6019 24 14 -5.0044 -9.9434 -2.6038 25 1 -5.6332 -9.3633 -3.8175 26 1 -5.1979 -11.4158 -2.6022 27 1 -5.6348 -9.3596 -1.3925 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3632 -0.8902 -0.5134 31 1 5.1346 -1.8136 -1.0116 32 1 5.6485 -1.0899 0.5312 33 1 4.6050 -2.5318 0.5286 34 1 0.9009 -2.6350 0.5148 35 1 2.5932 -3.1867 0.5159 36 1 0.9693 -2.4305 -1.9555 37 1 2.6615 -2.9823 -1.9544 38 1 0.5835 -4.8313 -4.6357 39 1 1.0611 -3.3652 -3.7465 40 1 2.8988 -4.0456 -5.2138 41 1 3.3761 -4.3150 -3.5203 42 1 3.8270 -6.2219 -4.8865 43 1 0.9503 -7.0238 -3.4963 44 1 0.9507 -7.0231 -1.7164 45 1 -1.3314 -6.0531 -1.7162 46 1 -1.3318 -6.0538 -3.4962 47 1 -0.7595 -8.6721 -2.6047 48 1 -2.5967 -11.4564 -2.6003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754897147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:41 Heat of formation + Delta-G solvation = -42.836865 kcal Electronic energy + Delta-G solvation = -27727.722255 eV Core-core repulsion = 23818.044299 eV Total energy + Delta-G solvation = -3909.677956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32621 -40.99627 -38.10533 -37.08612 -35.82766 -35.18852 -34.25828 -33.44120 -31.50356 -30.58299 -29.21551 -28.64460 -27.85053 -25.93225 -24.68639 -23.81616 -22.92465 -21.06799 -20.23188 -19.95128 -19.15124 -18.61447 -18.17391 -17.65626 -17.36198 -16.65340 -16.49279 -16.06539 -15.58604 -15.37196 -15.31035 -15.04576 -14.90403 -14.64171 -14.40231 -14.11972 -14.03014 -13.71337 -13.54219 -13.39220 -13.19605 -13.17651 -13.03633 -12.89188 -12.83668 -12.74379 -12.57668 -12.45190 -12.15884 -12.11650 -11.93664 -11.86350 -11.36745 -10.96310 -10.87643 -10.72270 -10.16978 -9.62893 -9.29227 -9.05607 -7.96262 -5.27428 0.91927 1.46111 1.51009 1.56961 1.68824 1.71676 1.98976 2.08719 2.57194 3.36233 3.48261 3.54758 3.77006 3.82374 4.09568 4.11658 4.15467 4.20029 4.23539 4.31154 4.34497 4.40432 4.51973 4.57817 4.60388 4.65280 4.69557 4.74991 4.75996 4.80202 4.83045 4.99030 5.05134 5.09829 5.13208 5.14990 5.19253 5.28981 5.39671 5.43622 5.60771 5.76606 6.24808 6.47855 6.52042 6.76959 7.02088 7.27572 7.30444 8.02754 8.28427 9.27139 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.002601 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.553512 B =10761.880278 C =11834.175064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.075 3.925 3 N -0.331 5.331 4 N -0.472 5.472 5 H 0.449 0.551 6 C 0.102 3.898 7 C -0.096 4.096 8 C -0.250 4.250 9 C -0.017 4.017 10 C -0.117 4.117 11 C 0.502 3.498 12 O -0.587 6.587 13 N -0.599 5.599 14 C 0.096 3.904 15 C 0.059 3.941 16 O -0.595 6.595 17 C 0.132 3.868 18 C 0.150 3.850 19 N -0.743 5.743 20 C -0.252 4.252 21 H 0.074 0.926 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.980 3.020 25 H -0.273 1.273 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.393 0.607 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.001 0.999 46 H 0.026 0.974 47 H 0.374 0.626 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.158 25.241 -1.522 31.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 N -0.155 5.155 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.028 4.028 7 C -0.154 4.154 8 C -0.261 4.261 9 C -0.056 4.056 10 C -0.156 4.156 11 C 0.292 3.708 12 O -0.466 6.466 13 N -0.331 5.331 14 C -0.026 4.026 15 C -0.019 4.019 16 O -0.403 6.403 17 C 0.008 3.992 18 C 0.023 3.977 19 N -0.386 5.386 20 C -0.383 4.383 21 H 0.091 0.909 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.808 3.192 25 H -0.199 1.199 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.243 0.757 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.019 0.981 46 H 0.044 0.956 47 H 0.206 0.794 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.291 26.242 -0.827 31.998 hybrid contribution 0.102 -1.372 0.044 1.377 sum 18.393 24.870 -0.783 30.942 Atomic orbital electron populations 1.20283 0.85918 1.03949 1.03567 1.22571 0.97780 0.90346 0.98390 1.77233 0.87678 1.23106 1.27467 1.46177 1.07054 1.05201 1.59747 0.70495 1.21320 0.97526 0.84997 0.98924 1.20635 0.91899 0.97938 1.04897 1.19716 0.91860 0.95646 1.18928 1.19437 1.01470 0.89764 0.94898 1.21716 1.04455 0.89524 0.99933 1.21595 0.76401 0.90196 0.82560 1.90713 1.53479 1.69737 1.32722 1.47911 1.65825 1.12294 1.07032 1.22082 0.96925 0.99068 0.84491 1.22775 0.95840 0.82891 1.00442 1.86556 1.36964 1.26350 1.90445 1.21164 0.92822 0.83034 1.02142 1.20957 0.93899 0.85945 0.96945 1.42406 1.04339 1.02361 1.89537 1.19571 0.84591 0.92057 1.42096 0.90855 1.25665 1.02487 0.95387 1.03205 1.69832 1.34356 0.98717 1.59014 0.85122 0.79334 0.76461 0.78286 1.19910 1.21715 1.20522 0.90190 0.90290 0.89697 0.88207 0.89191 0.89628 0.92263 0.91383 0.87149 0.86488 0.90238 0.85543 0.89706 0.92395 0.75705 0.89586 0.92961 0.98074 0.95649 0.79408 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.12 71.23 0.72 -0.55 16 2 C 0.08 1.49 7.22 43.10 0.31 1.80 16 3 N -0.33 -6.89 12.70 -47.39 -0.60 -7.49 16 4 N -0.47 -6.82 7.36 -48.00 -0.35 -7.17 16 5 H 0.45 3.54 8.96 -213.33 -1.91 1.63 16 6 C 0.10 1.42 7.21 41.41 0.30 1.71 16 7 C -0.10 -0.67 10.22 71.24 0.73 0.06 16 8 C -0.25 -4.51 5.35 -20.14 -0.11 -4.62 16 9 C -0.02 -0.33 4.45 29.85 0.13 -0.20 16 10 C -0.12 -2.02 4.23 29.85 0.13 -1.90 16 11 C 0.50 14.27 7.67 87.66 0.67 14.95 16 12 O -0.59 -22.99 15.56 -3.02 -0.05 -23.03 16 13 N -0.60 -16.71 2.44 -821.82 -2.00 -18.72 16 14 C 0.10 1.74 5.62 86.38 0.49 2.23 16 15 C 0.06 0.79 7.39 71.98 0.53 1.33 16 16 O -0.59 -11.67 12.48 -148.98 -1.86 -13.52 16 17 C 0.13 5.02 5.34 86.38 0.46 5.48 16 18 C 0.15 6.83 6.58 86.38 0.57 7.40 16 19 N -0.74 -41.53 5.60 -343.45 -1.92 -43.45 16 20 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 21 H 0.07 4.22 7.83 -2.91 -0.02 4.19 16 22 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 23 N -0.97 -61.80 13.06 21.65 0.28 -61.51 16 24 Si 0.98 47.86 29.55 68.60 2.03 49.89 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.27 7.92 -2.39 -0.02 1.25 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.08 0.74 7.14 -2.39 -0.02 0.72 16 34 H 0.06 1.41 7.88 -2.39 -0.02 1.39 16 35 H 0.07 1.43 7.09 -2.39 -0.02 1.41 16 36 H 0.11 1.54 7.40 -2.39 -0.02 1.52 16 37 H 0.12 1.34 7.26 -2.39 -0.02 1.32 16 38 H 0.08 1.66 8.07 -2.39 -0.02 1.64 16 39 H 0.13 1.38 6.44 -2.39 -0.02 1.36 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.64 7.30 -2.38 -0.02 0.62 16 42 H 0.39 4.12 9.12 -74.06 -0.68 3.45 16 43 H 0.09 3.24 7.11 -2.39 -0.02 3.22 16 44 H 0.05 2.26 7.42 -2.39 -0.02 2.24 16 45 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.37 22.01 7.67 -92.71 -0.71 21.30 16 48 H 0.25 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -86.16 396.87 -0.54 -86.71 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -2.30 Total: 28.89 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.24 Total: 9.42 kcal Atomic # 7 Polarization: -133.75 SS G_CDS: -4.60 Total: -138.35 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.91 Total: -36.56 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -86.16 -0.54 -86.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754897147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.870 kcal (2) G-P(sol) polarization free energy of solvation -86.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds