Wall clock time and date at job start Fri Apr 10 2020 18:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47659 * 2 1 4 4 N 1.46503 * 109.45758 * 303.90280 * 3 2 1 5 5 C 1.36935 * 119.99554 * 297.78292 * 4 3 2 6 6 H 1.08000 * 120.00332 * 356.64794 * 5 4 3 7 7 C 1.38813 * 119.99865 * 176.64966 * 5 4 3 8 8 N 1.31617 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46881 * 60.00254 * 9 7 5 11 11 H 1.48498 * 109.46939 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47078 * 300.00061 * 9 7 5 13 13 C 1.53037 * 109.46515 * 183.92679 * 3 2 1 14 14 C 1.53191 * 109.31462 * 178.60185 * 13 3 2 15 15 N 1.46924 * 108.76734 * 54.65026 * 14 13 3 16 16 C 1.34781 * 120.62692 * 126.40381 * 15 14 13 17 17 O 1.21277 * 119.99767 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.00160 * 359.97438 * 16 15 14 19 19 H 1.08998 * 110.48591 * 319.29396 * 18 16 15 20 20 C 1.54097 * 110.54996 * 81.99585 * 18 16 15 21 21 N 1.47387 * 103.70140 * 118.55675 * 20 18 16 22 22 C 1.46501 * 125.37609 * 180.02562 * 21 20 18 23 23 C 1.33946 * 109.21451 * 0.11445 * 21 20 18 24 24 O 1.21581 * 123.04274 * 179.90057 * 23 21 20 25 25 N 1.33945 * 113.91177 * 359.92478 * 23 21 20 26 26 C 1.46917 * 118.74099 * 306.38929 * 15 14 13 27 27 C 1.53047 * 109.45952 * 63.86721 * 3 2 1 28 28 H 1.08999 * 109.47168 * 174.36795 * 1 2 3 29 29 H 1.09003 * 109.46849 * 294.36369 * 1 2 3 30 30 H 1.09000 * 109.47255 * 54.36463 * 1 2 3 31 31 H 1.08996 * 109.46913 * 239.99598 * 2 1 3 32 32 H 1.09009 * 109.47171 * 119.99927 * 2 1 3 33 33 H 0.96997 * 120.00659 * 117.78747 * 4 3 2 34 34 H 0.97000 * 119.99845 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.49226 * 298.56569 * 13 3 2 36 36 H 1.08998 * 109.49381 * 58.65821 * 13 3 2 37 37 H 1.09007 * 109.59430 * 294.86366 * 14 13 3 38 38 H 1.09000 * 109.70383 * 174.50586 * 14 13 3 39 39 H 1.09002 * 110.55286 * 237.18989 * 20 18 16 40 40 H 1.09003 * 110.55345 * 0.02562 * 20 18 16 41 41 H 1.09001 * 109.46826 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47485 * 300.06914 * 22 21 20 43 43 H 1.08998 * 109.47251 * 60.07211 * 22 21 20 44 44 H 0.97001 * 125.41339 * 179.97438 * 25 23 21 45 45 H 1.09000 * 109.59063 * 293.81811 * 26 15 14 46 46 H 1.09005 * 109.70643 * 173.45931 * 26 15 14 47 47 H 1.08995 * 109.49903 * 301.34065 * 27 3 2 48 48 H 1.09006 * 109.49320 * 61.44054 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4764 2.1594 -1.1465 5 6 1.7634 1.7469 -2.4203 6 1 2.4479 0.9272 -2.5812 7 6 1.1744 2.3824 -3.5049 8 7 0.3405 3.3816 -3.3088 9 14 1.5653 1.8192 -5.2426 10 1 1.1704 0.3966 -5.4025 11 1 0.8133 2.6534 -6.2141 12 1 3.0224 1.9596 -5.4924 13 6 3.5673 1.4432 -0.0988 14 6 4.0720 2.8892 -0.1337 15 7 3.5428 3.6029 1.0364 16 6 4.3713 4.2584 1.8733 17 8 3.9222 4.8443 2.8356 18 6 5.8558 4.2635 1.6135 19 1 6.1884 3.2797 1.2824 20 6 6.2184 5.3369 0.5691 21 7 7.1186 6.2460 1.3009 22 6 7.7477 7.4462 0.7443 23 6 7.2717 5.7998 2.5546 24 8 7.9675 6.3620 3.3780 25 7 6.5894 4.6779 2.8187 26 6 2.0935 3.5888 1.2767 27 6 1.6109 2.1350 1.2955 28 1 -0.3633 -1.0227 -0.1009 29 1 -0.3633 0.4240 0.9362 30 1 -0.3634 0.5987 -0.8352 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 0.9000 2.9263 -1.0034 34 1 -0.0713 3.8254 -4.0667 35 1 3.9880 0.9316 0.7668 36 1 3.8731 0.9291 -1.0100 37 1 3.7255 3.3754 -1.0458 38 1 5.1616 2.8989 -0.1058 39 1 6.7335 4.8866 -0.2795 40 1 5.3250 5.8667 0.2387 41 1 8.3605 7.9232 1.5092 42 1 8.3744 7.1683 -0.1031 43 1 6.9757 8.1407 0.4130 44 1 6.5807 4.2124 3.6697 45 1 1.5856 4.1320 0.4797 46 1 1.8753 4.0586 2.2357 47 1 0.5242 2.1134 1.3768 48 1 2.0504 1.6168 2.1479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755070638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:45 Heat of formation + Delta-G solvation = -26.196402 kcal Electronic energy + Delta-G solvation = -29487.997512 eV Core-core repulsion = 25579.041140 eV Total energy + Delta-G solvation = -3908.956371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50104 -39.82832 -38.09506 -36.27634 -34.93532 -34.22773 -32.70830 -31.13491 -30.49114 -29.42807 -28.92496 -27.33509 -25.22175 -24.05970 -23.83241 -22.60595 -21.57091 -20.68461 -19.70072 -18.39188 -17.83941 -17.34538 -17.13877 -16.41870 -16.11041 -15.32566 -15.20707 -14.70748 -14.34695 -14.27063 -14.13971 -13.96621 -13.79207 -13.64327 -13.52022 -13.37574 -12.97316 -12.62391 -12.51621 -12.35099 -12.26861 -12.03277 -11.70256 -11.35466 -11.17397 -10.94960 -10.85940 -10.72665 -10.43902 -10.36754 -10.33085 -10.21548 -10.03684 -9.73092 -9.52833 -9.27510 -8.99676 -8.73861 -8.37539 -7.04298 -5.85953 -3.14660 2.30245 2.61847 2.84663 3.18353 3.34799 3.40759 3.42761 3.72277 4.11954 4.33441 4.49588 4.59398 4.80475 5.08731 5.13075 5.20951 5.24763 5.27748 5.36759 5.45156 5.47247 5.53704 5.61859 5.66694 5.70607 5.86706 5.89350 6.03345 6.06525 6.11841 6.13095 6.33569 6.38853 6.45766 6.48465 6.56600 6.67493 6.76375 6.86249 6.94261 6.96714 7.14327 7.29180 7.54835 7.62260 8.17228 8.32103 8.46548 9.44106 10.00254 10.35877 11.36042 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.003771 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.457613 B = 7424.138263 C = 8598.393163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.233 4.233 6 H 0.069 0.931 7 C -0.008 4.008 8 N -0.930 5.930 9 Si 0.899 3.101 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.287 1.287 13 C -0.136 4.136 14 C 0.111 3.889 15 N -0.591 5.591 16 C 0.500 3.500 17 O -0.537 6.537 18 C 0.103 3.897 19 H 0.117 0.883 20 C 0.107 3.893 21 N -0.637 5.637 22 C 0.119 3.881 23 C 0.706 3.294 24 O -0.588 6.588 25 N -0.715 5.715 26 C 0.116 3.884 27 C -0.130 4.130 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.432 0.568 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.769 -0.693 6.325 11.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.110 3.890 4 N -0.354 5.354 5 C -0.364 4.364 6 H 0.087 0.913 7 C -0.205 4.205 8 N -0.578 5.578 9 Si 0.731 3.269 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.214 1.214 13 C -0.176 4.176 14 C -0.011 4.011 15 N -0.324 5.324 16 C 0.285 3.715 17 O -0.414 6.414 18 C -0.007 4.007 19 H 0.134 0.866 20 C -0.017 4.017 21 N -0.377 5.377 22 C -0.023 4.023 23 C 0.406 3.594 24 O -0.466 6.466 25 N -0.376 5.376 26 C -0.006 4.006 27 C -0.168 4.168 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.275 0.725 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.988 0.006 6.999 12.196 hybrid contribution -0.253 -0.564 -0.943 1.127 sum 9.735 -0.558 6.056 11.479 Atomic orbital electron populations 1.21669 0.96082 1.00159 1.02021 1.21894 0.96457 0.98002 0.99897 1.19531 0.90721 0.91253 0.87456 1.42467 1.58081 1.34697 1.00199 1.19026 1.21181 1.13179 0.83045 0.91292 1.24674 0.99574 0.98724 0.97511 1.69631 1.33450 1.24813 1.29946 0.86398 0.77496 0.77823 0.85194 1.21434 1.21897 1.21398 1.22299 0.98903 0.95037 1.01358 1.21868 0.96865 0.93757 0.88649 1.48141 1.07615 1.50465 1.26193 1.20579 0.88164 0.79613 0.83129 1.90712 1.77189 1.44178 1.29331 1.21886 0.91139 1.00811 0.86844 0.86583 1.22350 0.95176 0.89818 0.94355 1.47071 1.50878 1.28062 1.11641 1.21424 0.97433 0.84326 0.99120 1.15785 0.80214 0.80698 0.82672 1.90942 1.44984 1.61413 1.49272 1.44827 1.49839 1.28362 1.14549 1.21613 0.78934 0.97588 1.02474 1.22118 1.01531 0.95104 0.98081 0.94782 0.94261 0.90382 0.92187 0.94229 0.78130 0.93500 0.93224 0.90417 0.88595 0.91499 0.88569 0.89285 0.89576 0.91927 0.91976 0.72529 0.90272 0.89956 0.90434 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.39 37.16 0.35 -1.97 16 2 C -0.12 -1.94 4.78 -26.74 -0.13 -2.07 16 3 C 0.20 3.22 0.43 -131.78 -0.06 3.16 16 4 N -0.71 -14.29 3.07 -47.19 -0.14 -14.44 16 5 C -0.23 -5.36 8.72 -15.06 -0.13 -5.49 16 6 H 0.07 1.56 6.74 -52.49 -0.35 1.21 16 7 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 8 N -0.93 -25.18 13.06 55.49 0.72 -24.46 16 9 Si 0.90 20.35 29.55 -169.99 -5.02 15.32 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 13 C -0.14 -1.90 4.67 -26.61 -0.12 -2.02 16 14 C 0.11 1.43 5.99 -3.71 -0.02 1.41 16 15 N -0.59 -8.11 2.97 -172.77 -0.51 -8.62 16 16 C 0.50 6.98 6.81 -10.98 -0.07 6.91 16 17 O -0.54 -9.51 16.00 5.56 0.09 -9.42 16 18 C 0.10 1.12 3.16 -68.21 -0.22 0.90 16 19 H 0.12 0.95 6.64 -51.93 -0.34 0.61 16 20 C 0.11 1.06 7.07 -2.98 -0.02 1.04 16 21 N -0.64 -7.54 3.36 -186.47 -0.63 -8.16 16 22 C 0.12 1.08 11.22 59.85 0.67 1.75 16 23 C 0.71 10.34 8.61 -88.40 -0.76 9.58 16 24 O -0.59 -10.66 17.29 5.29 0.09 -10.57 16 25 N -0.71 -8.89 5.62 -59.33 -0.33 -9.23 16 26 C 0.12 1.74 6.15 -3.72 -0.02 1.71 16 27 C -0.13 -1.88 4.71 -26.61 -0.13 -2.00 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.58 6.79 -51.93 -0.35 0.23 16 30 H 0.08 1.54 7.31 -51.93 -0.38 1.16 16 31 H 0.06 1.03 7.60 -51.93 -0.39 0.64 16 32 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.38 8.57 6.54 -40.82 -0.27 8.30 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.16 7.14 -51.93 -0.37 0.79 16 37 H 0.10 1.52 7.72 -51.93 -0.40 1.11 16 38 H 0.07 0.64 5.41 -51.93 -0.28 0.36 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.94 7.72 -51.93 -0.40 0.54 16 41 H 0.09 0.85 7.52 -51.93 -0.39 0.46 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.43 4.92 8.96 -40.82 -0.37 4.55 16 45 H 0.08 1.32 6.98 -51.93 -0.36 0.96 16 46 H 0.08 1.27 7.01 -51.93 -0.36 0.90 16 47 H 0.08 1.14 6.59 -51.93 -0.34 0.79 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -31.25 371.44 -8.36 -39.61 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -7.47 Total: 11.76 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -0.76 Total: 12.60 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.89 Total: -64.91 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.18 Total: -20.00 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.25 -8.36 -39.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755070638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.416 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds