Wall clock time and date at job start Fri Apr 10 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47659 * 2 1 4 4 N 1.46503 * 109.45758 * 303.90280 * 3 2 1 5 5 C 1.36935 * 119.99554 * 297.78292 * 4 3 2 6 6 H 1.08000 * 120.00332 * 356.64794 * 5 4 3 7 7 C 1.38813 * 119.99865 * 176.64966 * 5 4 3 8 8 N 1.31617 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46881 * 60.00254 * 9 7 5 11 11 H 1.48498 * 109.46939 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47078 * 300.00061 * 9 7 5 13 13 C 1.53037 * 109.46515 * 183.92679 * 3 2 1 14 14 C 1.53191 * 109.31462 * 178.60185 * 13 3 2 15 15 N 1.46924 * 108.76734 * 54.65026 * 14 13 3 16 16 C 1.34781 * 120.62692 * 126.40381 * 15 14 13 17 17 O 1.21277 * 119.99767 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.00160 * 359.97438 * 16 15 14 19 19 H 1.08998 * 110.48591 * 319.29396 * 18 16 15 20 20 C 1.54097 * 110.54996 * 81.99585 * 18 16 15 21 21 N 1.47387 * 103.70140 * 118.55675 * 20 18 16 22 22 C 1.46501 * 125.37609 * 180.02562 * 21 20 18 23 23 C 1.33946 * 109.21451 * 0.11445 * 21 20 18 24 24 O 1.21581 * 123.04274 * 179.90057 * 23 21 20 25 25 N 1.33945 * 113.91177 * 359.92478 * 23 21 20 26 26 C 1.46917 * 118.74099 * 306.38929 * 15 14 13 27 27 C 1.53047 * 109.45952 * 63.86721 * 3 2 1 28 28 H 1.08999 * 109.47168 * 174.36795 * 1 2 3 29 29 H 1.09003 * 109.46849 * 294.36369 * 1 2 3 30 30 H 1.09000 * 109.47255 * 54.36463 * 1 2 3 31 31 H 1.08996 * 109.46913 * 239.99598 * 2 1 3 32 32 H 1.09009 * 109.47171 * 119.99927 * 2 1 3 33 33 H 0.96997 * 120.00659 * 117.78747 * 4 3 2 34 34 H 0.97000 * 119.99845 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.49226 * 298.56569 * 13 3 2 36 36 H 1.08998 * 109.49381 * 58.65821 * 13 3 2 37 37 H 1.09007 * 109.59430 * 294.86366 * 14 13 3 38 38 H 1.09000 * 109.70383 * 174.50586 * 14 13 3 39 39 H 1.09002 * 110.55286 * 237.18989 * 20 18 16 40 40 H 1.09003 * 110.55345 * 0.02562 * 20 18 16 41 41 H 1.09001 * 109.46826 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47485 * 300.06914 * 22 21 20 43 43 H 1.08998 * 109.47251 * 60.07211 * 22 21 20 44 44 H 0.97001 * 125.41339 * 179.97438 * 25 23 21 45 45 H 1.09000 * 109.59063 * 293.81811 * 26 15 14 46 46 H 1.09005 * 109.70643 * 173.45931 * 26 15 14 47 47 H 1.08995 * 109.49903 * 301.34065 * 27 3 2 48 48 H 1.09006 * 109.49320 * 61.44054 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4764 2.1594 -1.1465 5 6 1.7634 1.7469 -2.4203 6 1 2.4479 0.9272 -2.5812 7 6 1.1744 2.3824 -3.5049 8 7 0.3405 3.3816 -3.3088 9 14 1.5653 1.8192 -5.2426 10 1 1.1704 0.3966 -5.4025 11 1 0.8133 2.6534 -6.2141 12 1 3.0224 1.9596 -5.4924 13 6 3.5673 1.4432 -0.0988 14 6 4.0720 2.8892 -0.1337 15 7 3.5428 3.6029 1.0364 16 6 4.3713 4.2584 1.8733 17 8 3.9222 4.8443 2.8356 18 6 5.8558 4.2635 1.6135 19 1 6.1884 3.2797 1.2824 20 6 6.2184 5.3369 0.5691 21 7 7.1186 6.2460 1.3009 22 6 7.7477 7.4462 0.7443 23 6 7.2717 5.7998 2.5546 24 8 7.9675 6.3620 3.3780 25 7 6.5894 4.6779 2.8187 26 6 2.0935 3.5888 1.2767 27 6 1.6109 2.1350 1.2955 28 1 -0.3633 -1.0227 -0.1009 29 1 -0.3633 0.4240 0.9362 30 1 -0.3634 0.5987 -0.8352 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 0.9000 2.9263 -1.0034 34 1 -0.0713 3.8254 -4.0667 35 1 3.9880 0.9316 0.7668 36 1 3.8731 0.9291 -1.0100 37 1 3.7255 3.3754 -1.0458 38 1 5.1616 2.8989 -0.1058 39 1 6.7335 4.8866 -0.2795 40 1 5.3250 5.8667 0.2387 41 1 8.3605 7.9232 1.5092 42 1 8.3744 7.1683 -0.1031 43 1 6.9757 8.1407 0.4130 44 1 6.5807 4.2124 3.6697 45 1 1.5856 4.1320 0.4797 46 1 1.8753 4.0586 2.2357 47 1 0.5242 2.1134 1.3768 48 1 2.0504 1.6168 2.1479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755070638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:44 Heat of formation + Delta-G solvation = -48.221188 kcal Electronic energy + Delta-G solvation = -29488.952578 eV Core-core repulsion = 25579.041140 eV Total energy + Delta-G solvation = -3909.911438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.50219 -40.99354 -39.36381 -37.39952 -36.23730 -35.12468 -34.40254 -32.30500 -31.79253 -30.84693 -30.06030 -28.18984 -26.47383 -25.53048 -25.04297 -23.79256 -22.74656 -21.64597 -20.85824 -19.65967 -18.85739 -18.82850 -18.46447 -17.42620 -17.19573 -16.54976 -16.35158 -16.09490 -15.62727 -15.44356 -15.32486 -15.23807 -15.08432 -14.71600 -14.63813 -14.45327 -14.29425 -13.86288 -13.64097 -13.32255 -13.18223 -13.01385 -12.93199 -12.81788 -12.72342 -12.54142 -12.23794 -12.14997 -11.98098 -11.73454 -11.56493 -11.48646 -11.37799 -11.24196 -10.88103 -10.71392 -10.34378 -9.61108 -9.59175 -8.77528 -7.76872 -5.00878 1.32626 1.55119 1.57561 1.59708 1.61576 1.80701 2.11448 2.68441 2.83298 3.25122 3.32367 3.58209 3.81236 3.89857 3.97615 4.01101 4.12821 4.24702 4.32711 4.44787 4.47123 4.52693 4.64690 4.68058 4.69211 4.77252 4.81224 4.85288 4.88480 4.90473 4.95644 5.12162 5.19600 5.25457 5.31706 5.42439 5.46767 5.59265 5.61219 5.70328 5.72459 5.81432 6.00974 6.31238 6.44582 6.46173 7.06574 7.42654 7.53191 8.30173 8.53097 9.46487 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.003771 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.457613 B = 7424.138263 C = 8598.393163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.194 3.806 4 N -0.716 5.716 5 C -0.199 4.199 6 H 0.078 0.922 7 C -0.071 4.071 8 N -0.970 5.970 9 Si 0.949 3.051 10 H -0.289 1.289 11 H -0.311 1.311 12 H -0.276 1.276 13 C -0.133 4.133 14 C 0.114 3.886 15 N -0.587 5.587 16 C 0.501 3.499 17 O -0.579 6.579 18 C 0.109 3.891 19 H 0.157 0.843 20 C 0.105 3.895 21 N -0.637 5.637 22 C 0.113 3.887 23 C 0.694 3.306 24 O -0.633 6.633 25 N -0.712 5.712 26 C 0.120 3.880 27 C -0.120 4.120 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.370 0.630 34 H 0.242 0.758 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.435 0.565 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.870 -2.584 6.438 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.104 3.896 4 N -0.356 5.356 5 C -0.332 4.332 6 H 0.096 0.904 7 C -0.263 4.263 8 N -0.622 5.622 9 Si 0.781 3.219 10 H -0.216 1.216 11 H -0.239 1.239 12 H -0.202 1.202 13 C -0.173 4.173 14 C -0.007 4.007 15 N -0.318 5.318 16 C 0.288 3.712 17 O -0.459 6.459 18 C 0.000 4.000 19 H 0.174 0.826 20 C -0.018 4.018 21 N -0.376 5.376 22 C -0.028 4.028 23 C 0.394 3.606 24 O -0.515 6.515 25 N -0.372 5.372 26 C -0.003 4.003 27 C -0.158 4.158 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.203 0.797 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.278 0.722 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.120 -1.949 7.095 14.179 hybrid contribution -0.940 -0.018 -0.887 1.292 sum 11.181 -1.967 6.208 12.939 Atomic orbital electron populations 1.21594 0.96737 1.00181 1.00979 1.21869 0.95821 0.97632 1.00603 1.19836 0.92245 0.91056 0.86473 1.42595 1.57825 1.34506 1.00656 1.19323 1.18604 1.11287 0.83965 0.90388 1.25213 1.01010 0.99866 1.00248 1.69780 1.35890 1.26885 1.29632 0.85574 0.77473 0.76745 0.82117 1.21593 1.23865 1.20238 1.22247 0.96737 0.95878 1.02394 1.21884 0.99326 0.92565 0.86964 1.48133 1.06954 1.50377 1.26376 1.21145 0.89474 0.78381 0.82203 1.90704 1.78209 1.45792 1.31189 1.22093 0.88394 1.03096 0.86429 0.82554 1.22597 0.95073 0.89300 0.94871 1.47274 1.50649 1.28699 1.10941 1.21630 0.97951 0.83800 0.99450 1.16098 0.80228 0.81046 0.83211 1.90900 1.47043 1.62782 1.50769 1.44850 1.49243 1.27774 1.15329 1.21419 0.80011 0.97710 1.01162 1.22026 1.01359 0.94559 0.97863 0.93609 0.92954 0.94397 0.93553 0.91311 0.79699 0.94878 0.90388 0.90918 0.91533 0.87083 0.84537 0.90074 0.91014 0.89038 0.90969 0.72221 0.92709 0.90603 0.91003 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 9.39 71.98 0.68 -3.61 16 2 C -0.12 -3.46 4.78 30.59 0.15 -3.31 16 3 C 0.19 5.74 0.43 3.63 0.00 5.74 16 4 N -0.72 -28.38 3.07 -303.22 -0.93 -29.31 16 5 C -0.20 -9.03 8.72 84.03 0.73 -8.30 16 6 H 0.08 3.37 6.74 -2.91 -0.02 3.35 16 7 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 8 N -0.97 -54.07 13.06 21.65 0.28 -53.79 16 9 Si 0.95 42.04 29.55 68.60 2.03 44.07 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.31 -14.63 7.11 99.48 0.71 -13.93 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 13 C -0.13 -3.19 4.67 30.67 0.14 -3.05 16 14 C 0.11 2.55 5.99 86.36 0.52 3.07 16 15 N -0.59 -14.72 2.97 -818.91 -2.43 -17.15 16 16 C 0.50 12.83 6.81 87.66 0.60 13.43 16 17 O -0.58 -19.98 16.00 -3.02 -0.05 -20.03 16 18 C 0.11 1.97 3.16 44.51 0.14 2.11 16 19 H 0.16 1.62 6.64 -2.39 -0.02 1.60 16 20 C 0.10 1.71 7.07 86.58 0.61 2.32 16 21 N -0.64 -13.66 3.36 -862.60 -2.90 -16.56 16 22 C 0.11 1.83 11.22 127.77 1.43 3.26 16 23 C 0.69 19.47 8.61 179.57 1.55 21.01 16 24 O -0.63 -22.99 17.29 -3.97 -0.07 -23.06 16 25 N -0.71 -16.23 5.62 -460.37 -2.59 -18.81 16 26 C 0.12 3.50 6.15 86.36 0.53 4.03 16 27 C -0.12 -3.23 4.71 30.67 0.14 -3.08 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.46 6.79 -2.39 -0.02 1.45 16 30 H 0.04 1.48 7.31 -2.39 -0.02 1.46 16 31 H 0.05 1.47 7.60 -2.39 -0.02 1.45 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.37 16.85 6.54 -92.71 -0.61 16.25 16 34 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.88 7.14 -2.39 -0.02 1.86 16 37 H 0.07 1.95 7.72 -2.38 -0.02 1.93 16 38 H 0.11 1.50 5.41 -2.39 -0.01 1.49 16 39 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.50 7.72 -2.39 -0.02 1.49 16 41 H 0.07 1.38 7.52 -2.39 -0.02 1.37 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.44 9.20 8.96 -92.71 -0.83 8.37 16 45 H 0.05 1.87 6.98 -2.39 -0.02 1.86 16 46 H 0.08 2.32 7.01 -2.38 -0.02 2.30 16 47 H 0.07 2.02 6.59 -2.39 -0.02 2.01 16 48 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -71.01 371.44 0.58 -70.42 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.44 Total: 33.75 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: 7.69 Total: 30.48 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -8.57 Total: -135.63 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.12 Total: -43.09 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -71.01 0.58 -70.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755070638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.204 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds