Wall clock time and date at job start Fri Apr 10 2020 18:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 N 1.46500 * 109.45895 * 54.65852 * 3 2 1 5 5 C 1.36936 * 119.99946 * 64.80665 * 4 3 2 6 6 H 1.08004 * 119.99833 * 354.89888 * 5 4 3 7 7 C 1.38812 * 120.00106 * 174.89093 * 5 4 3 8 8 N 1.31620 * 120.00064 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99985 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47628 * 89.99841 * 9 7 5 11 11 H 1.48505 * 109.46933 * 210.00199 * 9 7 5 12 12 H 1.48501 * 109.47291 * 329.99579 * 9 7 5 13 13 C 1.53042 * 109.45754 * 294.68789 * 3 2 1 14 14 C 1.53192 * 109.31030 * 178.61505 * 13 3 2 15 15 N 1.46923 * 108.77939 * 54.63441 * 14 13 3 16 16 C 1.34773 * 120.63287 * 126.36739 * 15 14 13 17 17 O 1.21280 * 120.00093 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00206 * 180.02562 * 16 15 14 19 19 H 1.09001 * 110.60602 * 38.66892 * 18 16 15 20 20 C 1.54108 * 110.54840 * 275.89374 * 18 16 15 21 21 N 1.47050 * 103.86329 * 241.40752 * 20 18 16 22 22 C 1.46501 * 125.40985 * 180.02562 * 21 20 18 23 23 C 1.33949 * 109.18035 * 359.97438 * 21 20 18 24 24 O 1.21581 * 123.04360 * 180.02562 * 23 21 20 25 25 N 1.33950 * 113.91613 * 0.02562 * 23 21 20 26 26 C 1.46928 * 118.73750 * 306.64924 * 15 14 13 27 27 C 1.52757 * 109.01146 * 53.30272 * 26 15 14 28 28 H 1.09003 * 109.47321 * 185.18324 * 1 2 3 29 29 H 1.08998 * 109.47694 * 305.18227 * 1 2 3 30 30 H 1.09001 * 109.46981 * 65.18436 * 1 2 3 31 31 H 1.09004 * 109.46728 * 239.99994 * 2 1 3 32 32 H 1.08997 * 109.47060 * 120.00042 * 2 1 3 33 33 H 0.96997 * 120.00455 * 244.80149 * 4 3 2 34 34 H 0.96996 * 120.00177 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.49740 * 58.66940 * 13 3 2 36 36 H 1.08994 * 109.50080 * 298.56286 * 13 3 2 37 37 H 1.09001 * 109.58968 * 294.84511 * 14 13 3 38 38 H 1.09004 * 109.70479 * 174.49374 * 14 13 3 39 39 H 1.09001 * 110.54464 * 359.97438 * 20 18 16 40 40 H 1.08997 * 110.54856 * 122.80470 * 20 18 16 41 41 H 1.09001 * 109.47153 * 89.99618 * 22 21 20 42 42 H 1.09000 * 109.46823 * 209.99786 * 22 21 20 43 43 H 1.09000 * 109.46640 * 329.99784 * 22 21 20 44 44 H 0.96993 * 125.41049 * 180.25910 * 25 23 21 45 45 H 1.09005 * 109.58718 * 173.14263 * 26 15 14 46 46 H 1.09001 * 109.58083 * 293.56481 * 26 15 14 47 47 H 1.08999 * 109.56334 * 185.55595 * 27 26 15 48 48 H 1.08996 * 109.38566 * 65.51741 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4493 2.1690 1.1268 5 6 1.7482 1.8004 2.4113 6 1 2.3526 0.9243 2.5949 7 6 1.2745 2.5527 3.4773 8 7 0.5376 3.6201 3.2535 9 14 1.6828 2.0503 5.2295 10 1 2.9468 2.7059 5.6508 11 1 0.5822 2.4698 6.1340 12 1 1.8438 0.5756 5.2969 13 6 1.6417 2.1240 -1.3111 14 6 2.1237 3.5780 -1.2931 15 7 3.5670 3.5944 -1.0187 16 6 4.4152 4.2423 -1.8416 17 8 3.9891 4.8195 -2.8195 18 6 5.8931 4.2495 -1.5469 19 1 6.2128 3.2799 -1.1650 20 6 6.2391 5.3668 -0.5435 21 7 7.1619 6.2361 -1.2886 22 6 7.7863 7.4550 -0.7685 23 6 7.3419 5.7357 -2.5180 24 8 8.0609 6.2581 -3.3477 25 7 6.6580 4.6077 -2.7507 26 6 4.0688 2.8859 0.1666 27 6 3.5644 1.4443 0.1352 28 1 -0.3634 -1.0235 0.0928 29 1 -0.3634 0.5921 0.8399 30 1 -0.3633 0.4313 -0.9328 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8466 2.9111 0.9630 34 1 0.2063 4.1456 3.9984 35 1 0.5571 2.1017 -1.4179 36 1 2.1012 1.5989 -2.1484 37 1 1.5972 4.1279 -0.5130 38 1 1.9304 4.0413 -2.2606 39 1 5.3420 5.9166 -0.2589 40 1 6.7305 4.9520 0.3365 41 1 8.7373 7.2041 -0.2986 42 1 7.9587 8.1530 -1.5878 43 1 7.1273 7.9149 -0.0320 44 1 6.6691 4.1046 -3.5799 45 1 5.1589 2.8904 0.1608 46 1 3.7042 3.3781 1.0681 47 1 3.8484 0.9381 1.0579 48 1 4.0057 0.9250 -0.7154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755070639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:47 Heat of formation + Delta-G solvation = -26.046062 kcal Electronic energy + Delta-G solvation = -29519.741127 eV Core-core repulsion = 25610.791275 eV Total energy + Delta-G solvation = -3908.949852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49319 -39.81912 -38.08809 -36.26474 -34.91745 -34.22564 -32.72307 -31.12638 -30.49239 -29.42797 -28.93071 -27.32842 -25.21763 -24.06056 -23.83127 -22.59033 -21.56464 -20.68026 -19.68448 -18.38890 -17.82454 -17.34034 -17.13931 -16.38303 -16.08801 -15.31210 -15.19093 -14.70343 -14.34234 -14.25407 -14.16109 -13.94885 -13.78039 -13.59778 -13.52036 -13.35781 -12.99393 -12.64100 -12.52149 -12.34884 -12.28528 -12.01223 -11.70689 -11.35741 -11.18281 -10.97090 -10.83264 -10.72405 -10.46005 -10.34838 -10.30431 -10.20392 -10.03590 -9.72658 -9.52254 -9.25471 -9.02356 -8.71083 -8.34766 -7.04116 -5.86841 -3.15691 2.31103 2.65005 2.86813 3.20320 3.33705 3.40755 3.42778 3.74474 4.14260 4.35549 4.48922 4.60359 4.80157 5.10423 5.15053 5.21111 5.24331 5.28346 5.40400 5.47304 5.49478 5.53805 5.59959 5.67910 5.72101 5.86977 5.89980 6.04189 6.06387 6.12673 6.14049 6.34106 6.40603 6.46647 6.49741 6.56056 6.67327 6.76631 6.85915 6.95356 6.96093 7.10534 7.31173 7.57395 7.62768 8.19515 8.31407 8.48279 9.43302 9.99616 10.35447 11.35114 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.003863 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.721752 B = 7246.263794 C = 8476.774141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.232 4.232 6 H 0.069 0.931 7 C -0.009 4.009 8 N -0.930 5.930 9 Si 0.899 3.101 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 C -0.130 4.130 14 C 0.116 3.884 15 N -0.591 5.591 16 C 0.500 3.500 17 O -0.538 6.538 18 C 0.104 3.896 19 H 0.117 0.883 20 C 0.107 3.893 21 N -0.637 5.637 22 C 0.122 3.878 23 C 0.706 3.294 24 O -0.587 6.587 25 N -0.715 5.715 26 C 0.110 3.890 27 C -0.134 4.134 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.432 0.568 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.113 -1.128 -6.042 10.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.110 3.890 4 N -0.354 5.354 5 C -0.363 4.363 6 H 0.087 0.913 7 C -0.205 4.205 8 N -0.578 5.578 9 Si 0.730 3.270 10 H -0.219 1.219 11 H -0.220 1.220 12 H -0.209 1.209 13 C -0.168 4.168 14 C -0.006 4.006 15 N -0.323 5.323 16 C 0.285 3.715 17 O -0.415 6.415 18 C -0.007 4.007 19 H 0.134 0.866 20 C -0.017 4.017 21 N -0.376 5.376 22 C -0.020 4.020 23 C 0.406 3.594 24 O -0.466 6.466 25 N -0.376 5.376 26 C -0.012 4.012 27 C -0.174 4.174 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.274 0.726 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.097 0.903 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.372 -0.440 -6.730 11.546 hybrid contribution -0.213 -0.516 0.951 1.103 sum 9.159 -0.956 -5.779 10.872 Atomic orbital electron populations 1.21667 0.96098 1.00088 1.02064 1.21924 0.96441 0.98154 0.99900 1.19536 0.90654 0.91192 0.87570 1.42464 1.54645 1.37975 1.00350 1.19070 1.27008 1.07338 0.82932 0.91271 1.24678 1.00807 0.97511 0.97503 1.69643 1.39587 1.18242 1.30307 0.86326 0.77375 0.77729 0.85531 1.21863 1.21989 1.20901 1.22112 1.01490 0.95205 0.98022 1.21618 0.79180 0.97522 1.02280 1.48136 1.07684 1.50799 1.25691 1.20558 0.87963 0.79612 0.83341 1.90711 1.78067 1.44455 1.28235 1.21904 0.90851 1.00941 0.86972 0.86597 1.22295 0.94745 0.90168 0.94512 1.47005 1.49607 1.27425 1.13580 1.21395 0.97017 0.83947 0.99619 1.15784 0.80382 0.80676 0.82554 1.90943 1.43717 1.63811 1.48085 1.44825 1.48549 1.27764 1.16486 1.21791 0.97160 0.93894 0.88319 1.22198 0.98658 0.95150 1.01435 0.94772 0.90490 0.94202 0.94155 0.92291 0.78157 0.93555 0.90517 0.92048 0.90166 0.90012 0.89321 0.88624 0.92554 0.90451 0.90734 0.72570 0.91542 0.88406 0.90332 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.42 37.16 0.35 -1.91 16 2 C -0.12 -1.94 4.80 -26.73 -0.13 -2.07 16 3 C 0.20 3.22 0.44 -131.78 -0.06 3.16 16 4 N -0.71 -14.25 3.00 -47.19 -0.14 -14.40 16 5 C -0.23 -5.32 8.55 -15.06 -0.13 -5.45 16 6 H 0.07 1.57 6.78 -52.48 -0.36 1.21 16 7 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 8 N -0.93 -25.02 13.06 55.49 0.72 -24.29 16 9 Si 0.90 20.26 29.55 -169.99 -5.02 15.24 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C -0.13 -1.88 4.73 -26.61 -0.13 -2.00 16 14 C 0.12 1.76 6.16 -3.71 -0.02 1.74 16 15 N -0.59 -8.25 2.98 -173.03 -0.52 -8.77 16 16 C 0.50 7.10 6.80 -10.99 -0.07 7.03 16 17 O -0.54 -9.63 16.01 5.56 0.09 -9.54 16 18 C 0.10 1.15 3.18 -68.20 -0.22 0.93 16 19 H 0.12 0.98 6.51 -51.93 -0.34 0.64 16 20 C 0.11 1.09 7.23 -3.16 -0.02 1.07 16 21 N -0.64 -7.66 3.36 -186.74 -0.63 -8.29 16 22 C 0.12 1.13 11.03 59.85 0.66 1.79 16 23 C 0.71 10.49 8.60 -88.39 -0.76 9.73 16 24 O -0.59 -10.79 17.53 5.29 0.09 -10.70 16 25 N -0.72 -9.03 5.63 -59.32 -0.33 -9.36 16 26 C 0.11 1.46 6.03 -3.93 -0.02 1.44 16 27 C -0.13 -1.90 4.61 -26.83 -0.12 -2.02 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.47 7.29 -51.93 -0.38 1.09 16 30 H 0.04 0.58 6.80 -51.93 -0.35 0.23 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.00 7.63 -51.93 -0.40 0.60 16 33 H 0.38 8.55 6.64 -40.82 -0.27 8.28 16 34 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.08 1.11 6.63 -51.93 -0.34 0.77 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.36 7.04 -51.93 -0.37 1.00 16 38 H 0.08 1.27 7.00 -51.93 -0.36 0.91 16 39 H 0.09 0.96 7.72 -51.93 -0.40 0.56 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.43 4.97 8.96 -40.82 -0.37 4.61 16 45 H 0.07 0.66 5.45 -51.93 -0.28 0.38 16 46 H 0.10 1.60 7.57 -51.93 -0.39 1.21 16 47 H 0.08 1.19 7.17 -51.93 -0.37 0.81 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 371.94 15.07 5.60 5.60 Total: -1.00 -31.16 371.94 -8.39 -39.55 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.49 Total: 11.86 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -0.77 Total: 13.10 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.89 Total: -65.11 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.18 Total: -20.24 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.16 -8.39 -39.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755070639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.502 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds