Wall clock time and date at job start Fri Apr 10 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.52997 * 109.47164 * 59.99836 * 4 2 1 7 7 C 1.53003 * 109.46992 * 185.00330 * 6 4 2 8 8 N 1.46497 * 109.47111 * 180.02562 * 7 6 4 9 9 C 1.34780 * 120.00270 * 180.02562 * 8 7 6 10 10 O 1.21705 * 119.99545 * 359.97438 * 9 8 7 11 11 C 1.46652 * 120.00223 * 179.97438 * 9 8 7 12 12 C 1.35146 * 126.37593 * 359.68534 * 11 9 8 13 13 N 1.37014 * 107.87510 * 179.87873 * 12 11 9 14 14 C 1.46502 * 125.65587 * 180.14972 * 13 12 11 15 15 C 1.34624 * 108.69774 * 0.39306 * 13 12 11 16 16 O 1.21730 * 125.73032 * 179.73823 * 15 13 12 17 17 N 1.34756 * 108.54445 * 359.75753 * 15 13 12 18 18 C 1.46502 * 126.18455 * 179.97438 * 17 15 13 19 19 N 1.46504 * 109.46883 * 180.02562 * 4 2 1 20 20 C 1.36932 * 120.00287 * 85.00233 * 19 4 2 21 21 H 1.08003 * 120.00064 * 359.97438 * 20 19 4 22 22 C 1.38811 * 120.00254 * 179.97438 * 20 19 4 23 23 N 1.31619 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47486 * 359.97438 * 24 22 20 26 26 H 1.48510 * 109.47028 * 119.99792 * 24 22 20 27 27 H 1.48502 * 109.47315 * 239.99727 * 24 22 20 28 28 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 30 30 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47289 * 240.00075 * 2 1 3 32 32 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 34 34 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 35 35 H 1.08998 * 109.47097 * 304.99739 * 6 4 2 36 36 H 1.09002 * 109.47223 * 64.99920 * 6 4 2 37 37 H 1.08998 * 109.46717 * 299.99642 * 7 6 4 38 38 H 1.09000 * 109.46966 * 59.99762 * 7 6 4 39 39 H 0.96996 * 119.99855 * 359.97438 * 8 7 6 40 40 H 1.07999 * 126.06470 * 0.02562 * 12 11 9 41 41 H 1.09002 * 109.47196 * 270.28397 * 14 13 12 42 42 H 1.09003 * 109.46875 * 30.27994 * 14 13 12 43 43 H 1.08992 * 109.47361 * 150.28042 * 14 13 12 44 44 H 1.08999 * 109.47222 * 270.00683 * 18 17 15 45 45 H 1.09001 * 109.46833 * 30.00588 * 18 17 15 46 46 H 1.08995 * 109.47295 * 149.99964 * 18 17 15 47 47 H 0.97003 * 119.99624 * 264.99510 * 19 4 2 48 48 H 0.97004 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 6 1.9347 -2.8478 2.5567 8 7 1.4469 -4.2291 2.5564 9 6 1.6869 -5.0288 3.6145 10 8 2.3093 -4.6034 4.5699 11 6 1.1981 -6.4115 3.6145 12 6 0.4927 -7.0122 2.6307 13 7 0.2370 -8.3000 3.0226 14 6 -0.5009 -9.2987 2.2452 15 6 0.7717 -8.4939 4.2428 16 8 0.7227 -9.5273 4.8843 17 7 1.3699 -7.3519 4.6350 18 6 2.0727 -7.1346 5.9020 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3541 1.7510 21 1 3.6489 1.2018 2.1460 22 6 5.5774 0.3544 1.7518 23 7 6.2359 -0.6787 1.2708 24 14 6.5107 1.8211 2.4352 25 1 5.5453 2.8443 2.9107 26 1 7.3639 1.3806 3.5681 27 1 7.3649 2.4045 1.3698 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 0.4437 -2.1650 1.1598 36 1 1.9646 -2.7028 0.4074 37 1 3.0210 -2.8465 2.6462 38 1 1.5001 -2.3087 3.3984 39 1 0.9505 -4.5680 1.7951 40 1 0.1869 -6.5585 1.6995 41 1 -1.5620 -9.2356 2.4866 42 1 -0.3584 -9.1088 1.1813 43 1 -0.1314 -10.2946 2.4892 44 1 1.3688 -6.7698 6.6500 45 1 2.5089 -8.0741 6.2412 46 1 2.8632 -6.3984 5.7574 47 1 3.9903 -1.4819 0.8945 48 1 7.2059 -0.6787 1.2717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755552846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:53 Heat of formation + Delta-G solvation = -13.491762 kcal Electronic energy + Delta-G solvation = -27774.221638 eV Core-core repulsion = 23865.816182 eV Total energy + Delta-G solvation = -3908.405457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.65245 -39.45525 -37.52148 -36.96225 -35.67565 -34.73780 -33.07484 -31.66959 -30.60407 -29.54298 -28.17212 -26.42650 -26.27200 -25.25906 -23.53661 -22.77800 -21.27628 -20.86281 -20.48432 -19.23467 -18.17137 -17.17418 -17.01011 -16.71285 -15.96593 -15.46819 -15.41668 -15.10395 -14.89599 -14.47886 -14.32225 -13.98139 -13.91377 -13.74113 -13.50031 -13.21042 -13.10397 -12.92138 -12.77758 -12.36826 -12.03758 -11.83447 -11.66669 -11.64881 -11.26049 -10.93114 -10.80826 -10.76797 -10.64711 -10.47582 -10.29640 -10.17058 -10.05126 -10.03393 -9.79567 -9.47478 -8.99112 -8.84243 -8.02550 -6.94840 -5.76426 -3.04009 1.14819 1.92066 2.61560 2.73877 3.20238 3.43801 3.47470 3.50138 3.52016 4.33941 4.59633 4.63808 4.74878 4.83363 4.88439 5.03919 5.16804 5.17297 5.32132 5.32871 5.44239 5.51751 5.59969 5.66039 5.68267 5.77839 5.86970 5.96458 6.07053 6.13409 6.18185 6.23847 6.33829 6.36783 6.39216 6.49555 6.61142 6.65289 6.67963 6.79932 6.96110 7.09670 7.31076 7.48043 7.72784 7.98749 8.17961 8.41778 9.53590 10.09714 10.44276 11.46043 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.002758 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.856713 B =10150.814894 C =11515.005046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.124 3.876 8 N -0.715 5.715 9 C 0.585 3.415 10 O -0.529 6.529 11 C -0.026 4.026 12 C 0.047 3.953 13 N -0.525 5.525 14 C 0.095 3.905 15 C 0.647 3.353 16 O -0.568 6.568 17 N -0.509 5.509 18 C 0.099 3.901 19 N -0.721 5.721 20 C -0.231 4.231 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.900 3.100 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.293 1.293 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.191 0.809 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.364 -12.309 -2.048 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.175 4.175 7 C 0.002 3.998 8 N -0.366 5.366 9 C 0.371 3.629 10 O -0.406 6.406 11 C -0.136 4.136 12 C -0.083 4.083 13 N -0.242 5.242 14 C -0.046 4.046 15 C 0.350 3.650 16 O -0.446 6.446 17 N -0.229 5.229 18 C -0.042 4.042 19 N -0.362 5.362 20 C -0.362 4.362 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.208 0.792 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.121 0.879 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.848 -12.618 -0.727 20.271 hybrid contribution 0.458 0.463 -0.302 0.718 sum -15.390 -12.155 -1.029 19.638 Atomic orbital electron populations 1.21939 0.97149 1.00603 1.00778 1.21776 0.93256 0.97745 1.00467 1.21834 1.04279 0.94861 0.98840 1.20180 0.86045 0.90980 0.95299 0.93258 1.22145 1.00580 0.98337 0.96448 1.21530 1.01481 0.78329 0.98440 1.45800 1.57553 1.13924 1.19280 1.16704 0.79972 0.82804 0.83460 1.90858 1.40388 1.75078 1.34315 1.19836 1.09094 0.93400 0.91234 1.22024 1.01450 0.84634 1.00166 1.44924 1.49837 1.11970 1.17457 1.21850 0.96076 0.91374 0.95287 1.16134 0.82398 0.84254 0.82234 1.91033 1.66949 1.27599 1.59042 1.45220 1.49948 1.10190 1.17513 1.21917 0.97458 1.03573 0.81266 1.42451 0.98903 1.21121 1.73743 1.19225 0.88781 0.96242 1.31975 0.90980 1.24704 0.96505 0.97698 1.01980 1.69657 1.06724 1.29802 1.51758 0.86217 0.80101 0.82220 0.78280 1.20571 1.21945 1.22039 0.93277 0.93840 0.93206 0.92193 0.89492 0.95228 0.94110 0.91412 0.91511 0.89359 0.91472 0.77002 0.79232 0.90934 0.89400 0.89381 0.91319 0.90048 0.87949 0.78307 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.85 37.16 0.33 -1.50 16 2 C -0.11 -1.75 2.69 -90.62 -0.24 -2.00 16 3 C -0.14 -2.46 8.26 37.16 0.31 -2.16 16 4 C 0.19 3.19 2.02 -67.93 -0.14 3.06 16 5 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 6 C -0.14 -1.80 4.65 -26.73 -0.12 -1.93 16 7 C 0.12 1.81 5.56 -4.04 -0.02 1.79 16 8 N -0.71 -8.13 5.54 -61.63 -0.34 -8.47 16 9 C 0.59 8.00 7.79 -12.86 -0.10 7.90 16 10 O -0.53 -9.39 14.83 5.18 0.08 -9.32 16 11 C -0.03 -0.31 6.88 -81.91 -0.56 -0.87 16 12 C 0.05 0.38 10.91 -16.34 -0.18 0.20 16 13 N -0.52 -5.00 3.12 -128.78 -0.40 -5.40 16 14 C 0.10 0.53 11.01 59.85 0.66 1.18 16 15 C 0.65 8.78 8.49 -87.07 -0.74 8.04 16 16 O -0.57 -9.42 17.59 5.16 0.09 -9.33 16 17 N -0.51 -6.70 3.21 -124.83 -0.40 -7.10 16 18 C 0.10 1.19 10.57 59.85 0.63 1.82 16 19 N -0.72 -16.13 4.45 -53.42 -0.24 -16.37 16 20 C -0.23 -5.91 7.57 -15.06 -0.11 -6.02 16 21 H 0.07 1.82 7.39 -52.48 -0.39 1.43 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 24 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.53 6.32 -51.93 -0.33 0.20 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.83 6.01 -51.93 -0.31 1.51 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.72 6.17 -51.93 -0.32 0.40 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.66 7.75 -51.93 -0.40 1.25 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.40 2.95 7.32 -40.82 -0.30 2.65 16 40 H 0.19 0.65 7.37 -52.49 -0.39 0.26 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 0.55 8.04 -51.93 -0.42 0.13 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 46 H 0.10 1.33 6.45 -51.93 -0.33 0.99 16 47 H 0.38 9.28 7.80 -40.82 -0.32 8.97 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -34.76 389.95 -7.74 -42.50 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.71 Total: 8.02 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -0.39 Total: 9.07 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.66 Total: -63.71 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.76 -7.74 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755552846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.005 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds