Wall clock time and date at job start Fri Apr 10 2020 18:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.52997 * 109.47164 * 59.99836 * 4 2 1 7 7 C 1.53003 * 109.46992 * 185.00330 * 6 4 2 8 8 N 1.46497 * 109.47111 * 180.02562 * 7 6 4 9 9 C 1.34780 * 120.00270 * 180.02562 * 8 7 6 10 10 O 1.21705 * 119.99545 * 359.97438 * 9 8 7 11 11 C 1.46652 * 120.00223 * 179.97438 * 9 8 7 12 12 C 1.35146 * 126.37593 * 359.68534 * 11 9 8 13 13 N 1.37014 * 107.87510 * 179.87873 * 12 11 9 14 14 C 1.46502 * 125.65587 * 180.14972 * 13 12 11 15 15 C 1.34624 * 108.69774 * 0.39306 * 13 12 11 16 16 O 1.21730 * 125.73032 * 179.73823 * 15 13 12 17 17 N 1.34756 * 108.54445 * 359.75753 * 15 13 12 18 18 C 1.46502 * 126.18455 * 179.97438 * 17 15 13 19 19 N 1.46504 * 109.46883 * 180.02562 * 4 2 1 20 20 C 1.36932 * 120.00287 * 85.00233 * 19 4 2 21 21 H 1.08003 * 120.00064 * 359.97438 * 20 19 4 22 22 C 1.38811 * 120.00254 * 179.97438 * 20 19 4 23 23 N 1.31619 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47486 * 359.97438 * 24 22 20 26 26 H 1.48510 * 109.47028 * 119.99792 * 24 22 20 27 27 H 1.48502 * 109.47315 * 239.99727 * 24 22 20 28 28 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 30 30 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47289 * 240.00075 * 2 1 3 32 32 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 34 34 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 35 35 H 1.08998 * 109.47097 * 304.99739 * 6 4 2 36 36 H 1.09002 * 109.47223 * 64.99920 * 6 4 2 37 37 H 1.08998 * 109.46717 * 299.99642 * 7 6 4 38 38 H 1.09000 * 109.46966 * 59.99762 * 7 6 4 39 39 H 0.96996 * 119.99855 * 359.97438 * 8 7 6 40 40 H 1.07999 * 126.06470 * 0.02562 * 12 11 9 41 41 H 1.09002 * 109.47196 * 270.28397 * 14 13 12 42 42 H 1.09003 * 109.46875 * 30.27994 * 14 13 12 43 43 H 1.08992 * 109.47361 * 150.28042 * 14 13 12 44 44 H 1.08999 * 109.47222 * 270.00683 * 18 17 15 45 45 H 1.09001 * 109.46833 * 30.00588 * 18 17 15 46 46 H 1.08995 * 109.47295 * 149.99964 * 18 17 15 47 47 H 0.97003 * 119.99624 * 264.99510 * 19 4 2 48 48 H 0.97004 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 6 1.9347 -2.8478 2.5567 8 7 1.4469 -4.2291 2.5564 9 6 1.6869 -5.0288 3.6145 10 8 2.3093 -4.6034 4.5699 11 6 1.1981 -6.4115 3.6145 12 6 0.4927 -7.0122 2.6307 13 7 0.2370 -8.3000 3.0226 14 6 -0.5009 -9.2987 2.2452 15 6 0.7717 -8.4939 4.2428 16 8 0.7227 -9.5273 4.8843 17 7 1.3699 -7.3519 4.6350 18 6 2.0727 -7.1346 5.9020 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3541 1.7510 21 1 3.6489 1.2018 2.1460 22 6 5.5774 0.3544 1.7518 23 7 6.2359 -0.6787 1.2708 24 14 6.5107 1.8211 2.4352 25 1 5.5453 2.8443 2.9107 26 1 7.3639 1.3806 3.5681 27 1 7.3649 2.4045 1.3698 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 0.4437 -2.1650 1.1598 36 1 1.9646 -2.7028 0.4074 37 1 3.0210 -2.8465 2.6462 38 1 1.5001 -2.3087 3.3984 39 1 0.9505 -4.5680 1.7951 40 1 0.1869 -6.5585 1.6995 41 1 -1.5620 -9.2356 2.4866 42 1 -0.3584 -9.1088 1.1813 43 1 -0.1314 -10.2946 2.4892 44 1 1.3688 -6.7698 6.6500 45 1 2.5089 -8.0741 6.2412 46 1 2.8632 -6.3984 5.7574 47 1 3.9903 -1.4819 0.8945 48 1 7.2059 -0.6787 1.2717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755552846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:52 Heat of formation + Delta-G solvation = -38.515732 kcal Electronic energy + Delta-G solvation = -27775.306759 eV Core-core repulsion = 23865.816182 eV Total energy + Delta-G solvation = -3909.490577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.53113 -40.54762 -38.89442 -38.01089 -36.56580 -35.87238 -34.85774 -32.88073 -31.84372 -30.87120 -29.12026 -27.58430 -27.14060 -26.66958 -24.90556 -24.03098 -22.48821 -21.83663 -21.46775 -20.59161 -19.20080 -18.93984 -17.90088 -17.65401 -17.04973 -16.88360 -16.36065 -16.29763 -16.01956 -15.65366 -15.41403 -15.26174 -15.10423 -14.93290 -14.77273 -14.42012 -14.31910 -13.96870 -13.46690 -13.42482 -13.24027 -13.15285 -12.87612 -12.85190 -12.61503 -12.58157 -12.40047 -12.12495 -11.93964 -11.85100 -11.82507 -11.64633 -11.34058 -11.15420 -11.04823 -10.94588 -10.73617 -10.10785 -8.91246 -8.84827 -7.85319 -5.08528 0.32452 1.10216 1.47135 1.49363 1.56678 1.64091 1.84814 2.21049 2.59776 2.61991 3.48766 3.57747 3.94653 3.97470 4.00339 4.03065 4.18471 4.25879 4.31850 4.36689 4.38096 4.48489 4.54250 4.60658 4.66792 4.77248 4.82541 4.89269 4.89953 4.94275 5.03738 5.10902 5.20478 5.25079 5.31891 5.34713 5.42866 5.49509 5.52142 5.61757 5.63322 5.78158 5.86335 6.10670 6.38312 6.57776 7.03262 7.22848 7.45208 8.23904 8.44345 9.38468 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.002758 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.856713 B =10150.814894 C =11515.005046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.140 4.140 4 C 0.177 3.823 5 H 0.038 0.962 6 C -0.120 4.120 7 C 0.136 3.864 8 N -0.693 5.693 9 C 0.586 3.414 10 O -0.583 6.583 11 C -0.073 4.073 12 C 0.102 3.898 13 N -0.516 5.516 14 C 0.085 3.915 15 C 0.630 3.370 16 O -0.610 6.610 17 N -0.520 5.520 18 C 0.101 3.899 19 N -0.730 5.730 20 C -0.205 4.205 21 H 0.074 0.926 22 C -0.079 4.079 23 N -0.969 5.969 24 Si 0.951 3.049 25 H -0.267 1.267 26 H -0.303 1.303 27 H -0.298 1.298 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.420 0.580 40 H 0.250 0.750 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.372 0.628 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.098 -12.643 -4.549 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.069 3.931 5 H 0.057 0.943 6 C -0.158 4.158 7 C 0.013 3.987 8 N -0.346 5.346 9 C 0.374 3.626 10 O -0.464 6.464 11 C -0.181 4.181 12 C -0.029 4.029 13 N -0.231 5.231 14 C -0.054 4.054 15 C 0.332 3.668 16 O -0.491 6.491 17 N -0.240 5.240 18 C -0.041 4.041 19 N -0.369 5.369 20 C -0.338 4.338 21 H 0.092 0.908 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.783 3.217 25 H -0.192 1.192 26 H -0.231 1.231 27 H -0.226 1.226 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.259 0.741 40 H 0.266 0.734 41 H 0.107 0.893 42 H 0.147 0.853 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.204 0.796 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.686 -12.933 -3.297 23.784 hybrid contribution 1.464 0.544 0.419 1.617 sum -18.222 -12.389 -2.878 22.222 Atomic orbital electron populations 1.21860 0.93588 1.02678 1.01530 1.21638 0.96108 0.95948 0.98931 1.21783 1.01503 0.96691 0.99783 1.20467 0.82997 0.93999 0.95665 0.94344 1.22016 1.02993 0.95183 0.95634 1.21150 0.98486 0.80109 0.98986 1.45432 1.57100 1.12420 1.19621 1.16993 0.79043 0.83627 0.82980 1.90836 1.42928 1.76234 1.36440 1.19649 1.12941 0.92731 0.92753 1.22910 0.96771 0.83095 1.00094 1.45225 1.48577 1.13156 1.16149 1.22262 0.96348 0.89870 0.96897 1.16403 0.83109 0.83792 0.83479 1.90986 1.68615 1.29030 1.60519 1.45309 1.49941 1.10736 1.17968 1.21828 0.97267 1.03212 0.81746 1.42634 1.01303 1.19745 1.73261 1.19497 0.88841 0.96481 1.28973 0.90848 1.25313 0.97696 0.99903 1.04173 1.69787 1.06106 1.31634 1.54620 0.85368 0.78981 0.80258 0.77087 1.19166 1.23101 1.22592 0.93064 0.92639 0.90477 0.92607 0.93671 0.93269 0.94212 0.87069 0.90468 0.94270 0.92800 0.74145 0.73412 0.89270 0.85261 0.90589 0.90874 0.89789 0.89433 0.79582 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.85 71.98 0.64 -2.14 16 2 C -0.11 -3.04 2.69 -10.79 -0.03 -3.07 16 3 C -0.14 -4.70 8.26 71.98 0.59 -4.11 16 4 C 0.18 5.82 2.02 44.99 0.09 5.91 16 5 H 0.04 1.36 8.08 -2.39 -0.02 1.34 16 6 C -0.12 -2.79 4.65 30.59 0.14 -2.65 16 7 C 0.14 3.85 5.56 86.38 0.48 4.33 16 8 N -0.69 -14.10 5.54 -467.10 -2.59 -16.69 16 9 C 0.59 15.63 7.79 86.44 0.67 16.30 16 10 O -0.58 -21.64 14.83 -4.37 -0.06 -21.71 16 11 C -0.07 -1.58 6.88 39.35 0.27 -1.31 16 12 C 0.10 1.18 10.91 83.17 0.91 2.09 16 13 N -0.52 -8.13 3.12 -679.65 -2.12 -10.25 16 14 C 0.09 0.59 11.01 127.77 1.41 2.00 16 15 C 0.63 16.61 8.49 179.11 1.52 18.13 16 16 O -0.61 -20.48 17.59 -4.44 -0.08 -20.56 16 17 N -0.52 -13.68 3.21 -667.05 -2.14 -15.82 16 18 C 0.10 2.60 10.57 127.77 1.35 3.95 16 19 N -0.73 -32.95 4.45 -322.93 -1.44 -34.39 16 20 C -0.21 -10.69 7.57 84.03 0.64 -10.05 16 21 H 0.07 3.74 7.39 -2.91 -0.02 3.72 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 23 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 24 Si 0.95 46.34 29.55 68.60 2.03 48.37 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 27 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.14 6.32 -2.39 -0.02 1.13 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.88 6.01 -2.39 -0.01 1.87 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.69 6.17 -2.39 -0.01 1.68 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 1.51 7.75 -2.39 -0.02 1.50 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.42 4.17 7.32 -92.71 -0.68 3.49 16 40 H 0.25 -0.25 7.37 -2.91 -0.02 -0.28 16 41 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.08 0.77 8.04 -2.39 -0.02 0.75 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 46 H 0.09 2.50 6.45 -2.39 -0.02 2.49 16 47 H 0.37 18.41 7.80 -92.71 -0.72 17.69 16 48 H 0.24 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -83.47 389.95 2.60 -80.87 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.42 Total: 22.99 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 9.15 Total: 25.39 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -8.01 Total: -135.37 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.14 Total: -42.26 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -83.47 2.60 -80.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755552846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.355 kcal (2) G-P(sol) polarization free energy of solvation -83.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds