Wall clock time and date at job start Fri Apr 10 2020 18:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00281 * 2 1 4 4 H 1.48494 * 109.47448 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46884 * 300.00483 * 3 2 1 6 6 H 1.48499 * 109.47042 * 60.00249 * 3 2 1 7 7 C 1.38817 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99442 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99674 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46893 * 179.97438 * 10 9 7 12 12 H 1.08990 * 110.43540 * 52.46286 * 11 10 9 13 13 C 1.54889 * 110.60019 * 289.83788 * 11 10 9 14 14 C 1.54891 * 102.74729 * 203.32557 * 13 11 10 15 15 C 1.54260 * 104.19686 * 37.94641 * 14 13 11 16 16 H 1.09002 * 110.07572 * 95.69487 * 15 14 13 17 17 N 1.46505 * 110.03183 * 217.10348 * 15 14 13 18 18 C 1.34772 * 120.00062 * 272.16354 * 17 15 14 19 19 O 1.21284 * 119.99889 * 0.02562 * 18 17 15 20 20 C 1.50694 * 120.00153 * 179.97438 * 18 17 15 21 21 N 1.46505 * 109.47120 * 179.97438 * 20 18 17 22 22 C 1.46382 * 119.32593 * 90.00745 * 21 20 18 23 23 C 1.53246 * 109.15074 * 209.05926 * 22 21 20 24 24 C 1.53238 * 108.56086 * 304.51714 * 23 22 21 25 25 N 1.46377 * 109.15677 * 55.48198 * 24 23 22 26 26 C 1.34137 * 119.33324 * 270.00528 * 21 20 18 27 27 O 1.21582 * 118.69517 * 359.40193 * 26 21 20 28 28 C 1.53875 * 106.59887 * 336.38755 * 15 14 13 29 29 H 0.96998 * 119.99755 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00858 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47160 * 59.99802 * 10 9 7 32 32 H 1.09003 * 109.47224 * 300.00079 * 10 9 7 33 33 H 1.08993 * 110.75341 * 321.64141 * 13 11 10 34 34 H 1.09002 * 110.75086 * 84.82820 * 13 11 10 35 35 H 1.08998 * 110.48518 * 279.26575 * 14 13 11 36 36 H 1.09005 * 110.48446 * 156.62347 * 14 13 11 37 37 H 0.96996 * 119.99640 * 92.16793 * 17 15 14 38 38 H 1.09004 * 109.47267 * 60.00515 * 20 18 17 39 39 H 1.08995 * 109.47688 * 300.00322 * 20 18 17 40 40 H 1.08993 * 109.52816 * 89.15613 * 22 21 20 41 41 H 1.09003 * 109.52137 * 328.95830 * 22 21 20 42 42 H 1.09001 * 109.62366 * 64.23976 * 23 22 21 43 43 H 1.09000 * 109.61642 * 184.60565 * 23 22 21 44 44 H 1.09004 * 109.52176 * 175.38517 * 24 23 22 45 45 H 1.09006 * 109.52466 * 295.51320 * 24 23 22 46 46 H 0.96998 * 119.33371 * 150.91930 * 25 24 23 47 47 H 1.08997 * 110.03495 * 119.28451 * 28 15 14 48 48 H 1.09003 * 110.03439 * 240.71696 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 1 0.3431 -4.7047 -0.8095 13 6 0.3361 -4.9138 1.3642 14 6 -0.1149 -6.3949 1.4095 15 6 1.0576 -7.1671 0.7703 16 1 1.7236 -7.5452 1.5459 17 7 0.5463 -8.2778 -0.0367 18 6 0.3175 -9.4767 0.5348 19 8 0.5344 -9.6360 1.7174 20 6 -0.2089 -10.6190 -0.2952 21 7 -0.3711 -11.8036 0.5513 22 6 -1.6463 -12.0277 1.2343 23 6 -1.3928 -12.8051 2.5303 24 6 -0.6416 -14.0955 2.1860 25 7 0.5791 -13.7594 1.4514 26 6 0.6519 -12.6609 0.6849 27 8 1.6858 -12.4336 0.0870 28 6 1.8070 -6.1656 -0.1258 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.6846 -3.7146 0.8894 32 1 2.6847 -3.7146 -0.8905 33 1 1.0207 -4.6932 2.1831 34 1 -0.5237 -4.2443 1.3904 35 1 -1.0259 -6.5342 0.8275 36 1 -0.2666 -6.7161 2.4401 37 1 0.3726 -8.1503 -0.9825 38 1 0.4952 -10.8399 -1.0975 39 1 -1.1726 -10.3432 -0.7234 40 1 -2.3095 -12.6029 0.5882 41 1 -2.1072 -11.0682 1.4692 42 1 -0.7901 -12.2004 3.2080 43 1 -2.3442 -13.0473 3.0038 44 1 -0.3808 -14.6214 3.1045 45 1 -1.2754 -14.7325 1.5690 46 1 1.3511 -14.3425 1.5205 47 1 2.8364 -6.0569 0.2154 48 1 1.7903 -6.5059 -1.1612 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755737626.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:03 Heat of formation + Delta-G solvation = -85.766893 kcal Electronic energy + Delta-G solvation = -27486.309684 eV Core-core repulsion = 23574.770143 eV Total energy + Delta-G solvation = -3911.539542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85965 -40.73040 -39.13864 -37.47711 -36.49268 -35.79692 -34.75600 -32.96428 -32.02780 -30.22047 -29.87574 -28.25746 -26.47042 -26.01101 -24.07055 -23.89309 -21.98548 -21.36875 -20.97618 -19.93079 -19.08379 -18.65591 -18.35457 -18.22022 -17.32826 -16.75324 -16.60572 -16.19778 -15.94610 -15.76668 -15.43482 -15.22310 -15.10214 -14.90086 -14.69278 -14.54485 -14.43127 -14.18128 -13.58118 -13.39326 -13.15416 -12.94060 -12.82833 -12.61428 -12.39636 -12.34057 -12.23222 -12.12242 -12.08427 -11.78527 -11.63718 -11.54269 -11.48226 -11.23132 -11.10580 -10.91840 -10.15581 -10.03354 -9.59878 -8.97763 -7.95011 -5.22940 1.47165 1.47774 1.56080 1.58023 1.64863 2.06122 2.39275 2.56258 2.90719 3.38332 3.57095 3.59564 3.78259 3.83793 3.89464 3.99475 4.08428 4.18770 4.28345 4.42555 4.43280 4.48493 4.50486 4.53379 4.62468 4.67218 4.70768 4.76874 4.77133 4.86117 4.87513 5.05720 5.08074 5.15706 5.21220 5.24681 5.33624 5.37981 5.48005 5.55025 5.58288 5.63637 6.08581 6.28168 6.59833 6.77327 7.29047 7.34362 7.51880 8.11521 8.35228 9.28773 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.040343 B = 0.001898 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.881792 B =14745.160551 C =15048.007903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.743 5.743 10 C 0.157 3.843 11 C -0.086 4.086 12 H 0.077 0.923 13 C -0.110 4.110 14 C -0.118 4.118 15 C 0.150 3.850 16 H 0.067 0.933 17 N -0.710 5.710 18 C 0.492 3.508 19 O -0.579 6.579 20 C 0.112 3.888 21 N -0.607 5.607 22 C 0.108 3.892 23 C -0.152 4.152 24 C 0.107 3.893 25 N -0.734 5.734 26 C 0.703 3.297 27 O -0.650 6.650 28 C -0.111 4.111 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.015 0.985 32 H 0.021 0.979 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.416 0.584 38 H 0.114 0.886 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.416 0.584 47 H 0.074 0.926 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 -32.560 1.012 33.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.031 3.969 11 C -0.105 4.105 12 H 0.095 0.905 13 C -0.148 4.148 14 C -0.157 4.157 15 C 0.044 3.956 16 H 0.085 0.915 17 N -0.363 5.363 18 C 0.278 3.722 19 O -0.459 6.459 20 C -0.015 4.015 21 N -0.343 5.343 22 C -0.014 4.014 23 C -0.190 4.190 24 C -0.016 4.016 25 N -0.391 5.391 26 C 0.404 3.596 27 O -0.533 6.533 28 C -0.150 4.150 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.132 0.868 39 H 0.170 0.830 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.147 0.853 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.254 0.746 47 H 0.092 0.908 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.979 -32.391 1.545 33.170 hybrid contribution 0.501 1.281 -0.019 1.375 sum -6.479 -31.110 1.526 31.814 Atomic orbital electron populations 1.69818 1.06516 1.25964 1.59661 1.25562 0.96457 1.01053 1.03846 0.85074 0.78165 0.79830 0.76698 1.19221 1.21878 1.22065 1.19684 0.91478 0.85552 1.40945 0.90881 1.42552 1.05670 1.01096 1.89261 1.20873 0.93861 0.84885 0.97325 1.22010 0.97052 0.93548 0.97922 0.90470 1.22382 0.99650 0.95835 0.96913 1.22639 0.98342 0.93976 1.00697 1.21417 0.94886 0.85985 0.93280 0.91486 1.46086 1.66373 1.10032 1.13793 1.21841 0.77118 0.84627 0.88596 1.90673 1.53210 1.83716 1.18252 1.21373 1.05652 0.82084 0.92397 1.46477 1.13957 1.22692 1.51133 1.21883 0.83744 1.01983 0.93754 1.22213 1.03353 0.96386 0.97076 1.21806 0.85255 0.97048 0.97490 1.44976 1.18787 1.25578 1.49751 1.15715 0.83071 0.80982 0.79877 1.90904 1.31147 1.77729 1.53510 1.22329 0.99244 0.92607 1.00772 0.94005 0.79304 0.96682 0.96155 0.92648 0.92584 0.90154 0.92317 0.74588 0.86801 0.83018 0.88573 0.89804 0.93091 0.85319 0.87915 0.89430 0.74625 0.90751 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.69 13.06 21.65 0.28 -59.40 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 7 C -0.24 -13.92 9.99 84.04 0.84 -13.08 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -38.18 5.49 -343.44 -1.89 -40.06 16 10 C 0.16 6.29 5.55 86.38 0.48 6.77 16 11 C -0.09 -2.65 2.88 -9.72 -0.03 -2.68 16 12 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.11 -3.40 6.20 31.89 0.20 -3.21 16 14 C -0.12 -2.99 6.53 31.67 0.21 -2.79 16 15 C 0.15 3.61 3.25 45.71 0.15 3.76 16 16 H 0.07 1.95 7.57 -2.39 -0.02 1.94 16 17 N -0.71 -13.58 5.04 -439.11 -2.21 -15.79 16 18 C 0.49 11.19 7.89 87.66 0.69 11.88 16 19 O -0.58 -18.61 16.09 -3.04 -0.05 -18.65 16 20 C 0.11 1.75 5.80 85.63 0.50 2.25 16 21 N -0.61 -10.72 2.30 -845.67 -1.95 -12.67 16 22 C 0.11 1.06 6.49 86.48 0.56 1.62 16 23 C -0.15 -1.25 6.20 30.76 0.19 -1.06 16 24 C 0.11 0.73 7.21 86.48 0.62 1.35 16 25 N -0.73 -11.39 5.58 -479.86 -2.68 -14.07 16 26 C 0.70 16.44 8.18 179.45 1.47 17.90 16 27 O -0.65 -21.15 16.49 -3.97 -0.07 -21.21 16 28 C -0.11 -2.65 6.14 31.32 0.19 -2.46 16 29 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.37 20.29 7.64 -92.71 -0.71 19.58 16 31 H 0.02 0.63 8.02 -2.39 -0.02 0.61 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 1.85 7.97 -2.39 -0.02 1.83 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.42 5.19 8.32 -92.71 -0.77 4.41 16 38 H 0.11 1.90 7.29 -2.39 -0.02 1.88 16 39 H 0.15 0.96 8.06 -2.39 -0.02 0.94 16 40 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.08 0.83 8.06 -2.39 -0.02 0.81 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 46 H 0.42 5.78 8.88 -92.71 -0.82 4.96 16 47 H 0.07 1.84 7.84 -2.39 -0.02 1.83 16 48 H 0.09 1.80 7.62 -2.39 -0.02 1.78 16 Total: -1.00 -84.51 387.46 -1.32 -85.82 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -1.32 Total: 31.02 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 6.53 Total: 16.25 kcal Atomic # 7 Polarization: -133.56 SS G_CDS: -8.44 Total: -142.01 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.11 Total: -39.86 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -84.51 -1.32 -85.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755737626.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.057 kcal (2) G-P(sol) polarization free energy of solvation -84.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds