Wall clock time and date at job start Fri Apr 10 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39864 * 125.89999 * 2 1 4 4 C 1.35316 * 107.91828 * 179.86198 * 3 2 1 5 5 N 1.34952 * 107.74600 * 0.40147 * 4 3 2 6 6 C 1.46497 * 126.03662 * 179.75302 * 5 4 3 7 7 C 1.52995 * 109.47654 * 124.96854 * 6 5 4 8 8 H 1.09003 * 109.47311 * 304.99914 * 7 6 5 9 9 C 1.53002 * 109.46746 * 64.99483 * 7 6 5 10 10 C 1.50702 * 109.47557 * 184.99684 * 7 6 5 11 11 O 1.21277 * 119.99764 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99957 * 180.02562 * 10 7 6 13 13 C 1.46497 * 120.00254 * 359.97438 * 12 10 7 14 14 C 1.46498 * 119.99837 * 180.02562 * 12 10 7 15 15 C 1.53003 * 109.47318 * 89.99687 * 14 12 10 16 16 H 1.08996 * 109.46583 * 60.00311 * 15 14 12 17 17 O 1.42901 * 109.47301 * 300.00379 * 15 14 12 18 18 C 1.52994 * 109.47308 * 179.97438 * 15 14 12 19 19 N 1.46498 * 109.47316 * 185.00393 * 18 15 14 20 20 C 1.36936 * 120.00160 * 180.02562 * 19 18 15 21 21 H 1.08000 * 120.00270 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00403 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99455 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00641 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47249 * 89.99994 * 24 22 20 26 26 H 1.48500 * 109.47413 * 210.00483 * 24 22 20 27 27 H 1.48501 * 109.46665 * 330.00188 * 24 22 20 28 28 N 1.30836 * 125.89591 * 180.31016 * 2 1 3 29 29 H 1.08999 * 109.46995 * 269.71428 * 1 2 3 30 30 H 1.08994 * 109.46790 * 29.71114 * 1 2 3 31 31 H 1.08997 * 109.47305 * 149.71555 * 1 2 3 32 32 H 1.07995 * 126.04278 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.12602 * 180.14496 * 4 3 2 34 34 H 1.09002 * 109.46907 * 244.96896 * 6 5 4 35 35 H 1.09007 * 109.47224 * 4.96492 * 6 5 4 36 36 H 1.08999 * 109.47449 * 299.99873 * 9 7 6 37 37 H 1.08999 * 109.47201 * 60.00832 * 9 7 6 38 38 H 1.09004 * 109.46725 * 180.02562 * 9 7 6 39 39 H 1.08996 * 109.46945 * 89.99629 * 13 12 10 40 40 H 1.08994 * 109.47290 * 210.00341 * 13 12 10 41 41 H 1.09001 * 109.47020 * 330.00167 * 13 12 10 42 42 H 1.08994 * 109.47064 * 210.00038 * 14 12 10 43 43 H 1.09005 * 109.46843 * 330.00209 * 14 12 10 44 44 H 0.96701 * 113.99329 * 299.99905 * 17 15 14 45 45 H 1.09002 * 109.47111 * 305.00744 * 18 15 14 46 46 H 1.09007 * 109.46845 * 65.00072 * 18 15 14 47 47 H 0.97000 * 119.99646 * 359.97438 * 19 18 15 48 48 H 0.97001 * 119.99460 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0031 5 7 3.6087 -0.6343 -0.0040 6 6 4.7898 -1.5009 -0.0088 7 6 4.7122 -2.4754 1.1681 8 1 4.5874 -1.9162 2.0953 9 6 3.5201 -3.4147 0.9747 10 6 5.9825 -3.2834 1.2360 11 8 6.8634 -3.0977 0.4233 12 7 6.1397 -4.2123 2.1998 13 6 5.0758 -4.4362 3.1818 14 6 7.3748 -4.9974 2.2661 15 6 8.3911 -4.2752 3.1529 16 1 7.9803 -4.1590 4.1557 17 8 8.6742 -2.9875 2.6018 18 6 9.6808 -5.0954 3.2227 19 7 10.6094 -4.4662 4.1650 20 6 11.8381 -5.0262 4.3926 21 1 12.1225 -5.9320 3.8778 22 6 12.7181 -4.4297 5.2851 23 7 12.3713 -3.3260 5.9129 24 14 14.3945 -5.1932 5.5951 25 1 15.3789 -4.6328 4.6349 26 1 14.8280 -4.8892 6.9825 27 1 14.3092 -6.6647 5.4145 28 7 2.2742 -1.0599 -0.0057 29 1 -0.3633 -0.0051 1.0276 30 1 -0.3633 0.8925 -0.5093 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9924 2.1597 -0.0004 33 1 4.4892 1.3484 0.0061 34 1 4.8253 -2.0615 -0.9430 35 1 5.6885 -0.8909 0.0832 36 1 2.6013 -2.8304 0.9256 37 1 3.6449 -3.9741 0.0475 38 1 3.4645 -4.1087 1.8134 39 1 4.3935 -5.2006 2.8102 40 1 5.5142 -4.7670 4.1233 41 1 4.5283 -3.5075 3.3424 42 1 7.1588 -5.9796 2.6864 43 1 7.7856 -5.1136 1.2631 44 1 9.0434 -3.0146 1.7085 45 1 9.4508 -6.1062 3.5594 46 1 10.1387 -5.1371 2.2343 47 1 10.3541 -3.6524 4.6271 48 1 12.9862 -2.9094 6.5368 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755780892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:10 Heat of formation + Delta-G solvation = 11.786186 kcal Electronic energy + Delta-G solvation = -27676.736029 eV Core-core repulsion = 23769.426706 eV Total energy + Delta-G solvation = -3907.309323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49603 -40.28816 -37.46282 -35.56058 -35.32281 -33.99211 -32.76961 -31.29141 -30.19000 -29.58826 -28.83350 -27.16584 -25.96477 -25.50698 -23.41397 -22.20276 -21.25541 -21.06312 -20.02769 -19.19291 -17.82210 -17.15360 -16.64173 -16.44802 -16.11784 -15.40218 -15.31603 -15.06749 -14.57001 -14.40290 -14.27959 -13.98856 -13.76069 -13.60644 -13.35112 -13.22085 -13.00910 -12.88482 -12.73552 -12.51079 -12.44748 -12.31109 -12.17164 -12.02095 -11.50979 -11.47559 -11.42049 -10.93841 -10.81441 -10.66847 -10.59828 -10.16006 -9.89390 -9.76339 -9.59778 -9.38966 -8.89223 -8.77723 -8.55490 -6.91618 -5.74619 -3.04048 1.65802 2.19136 2.54138 2.55955 2.91764 3.44009 3.48584 3.50575 4.14484 4.27318 4.45194 4.57111 4.57676 4.64633 4.82147 4.86908 4.93958 4.97426 5.03705 5.16820 5.20337 5.28720 5.31220 5.31701 5.41015 5.43767 5.54335 5.57625 5.60564 5.62355 5.65936 5.70788 5.73936 5.86454 5.99563 6.07082 6.22793 6.39478 6.52544 6.53096 6.73856 6.78914 7.24621 7.51738 7.69145 8.05748 8.18476 8.43717 9.54897 10.12857 10.48455 11.47814 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.027179 B = 0.002126 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.957167 B =13165.848987 C =13630.140351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.065 3.935 3 C -0.276 4.276 4 C 0.060 3.940 5 N -0.368 5.368 6 C 0.154 3.846 7 C -0.118 4.118 8 H 0.100 0.900 9 C -0.165 4.165 10 C 0.531 3.469 11 O -0.538 6.538 12 N -0.604 5.604 13 C 0.075 3.925 14 C 0.084 3.916 15 C 0.087 3.913 16 H 0.095 0.905 17 O -0.549 6.549 18 C 0.126 3.874 19 N -0.725 5.725 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 N -0.293 5.293 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.374 0.626 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.388 0.612 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.961 4.197 -11.583 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.305 4.305 4 C -0.086 4.086 5 N -0.149 5.149 6 C 0.032 3.968 7 C -0.140 4.140 8 H 0.118 0.882 9 C -0.222 4.222 10 C 0.318 3.682 11 O -0.415 6.415 12 N -0.336 5.336 13 C -0.068 4.068 14 C -0.039 4.039 15 C 0.026 3.974 16 H 0.113 0.887 17 O -0.354 6.354 18 C -0.003 4.003 19 N -0.370 5.370 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.579 5.579 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 N -0.117 5.117 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.191 0.809 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.221 0.779 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.222 0.778 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.404 3.012 -11.445 28.026 hybrid contribution 1.278 0.528 0.048 1.384 sum -24.127 3.540 -11.396 26.916 Atomic orbital electron populations 1.20156 0.86865 1.03138 1.02844 1.22403 0.96923 0.90989 0.99745 1.21368 0.91641 0.99764 1.17726 1.22631 0.99846 0.84952 1.01186 1.48642 1.05252 1.04658 1.56387 1.21541 0.83534 0.92420 0.99296 1.21457 0.94989 0.97339 1.00227 0.88182 1.22292 0.98102 0.99406 1.02425 1.20169 0.87754 0.79766 0.80523 1.90673 1.43470 1.66847 1.40509 1.47594 1.17794 1.38293 1.29935 1.21998 0.90430 1.01897 0.92504 1.22287 0.84763 0.94407 1.02456 1.22477 0.93852 0.84405 0.96687 0.88722 1.86532 1.85663 1.27714 1.35460 1.21236 0.89681 0.95048 0.94297 1.42246 1.14680 1.30650 1.49412 1.19224 0.91798 1.06409 1.19915 0.91258 1.24770 0.98743 0.97702 0.99793 1.69689 1.36271 1.20348 1.31559 0.86173 0.84337 0.78375 0.77185 1.21700 1.21748 1.20784 1.77131 0.86597 1.22517 1.25420 0.90649 0.90593 0.91062 0.83705 0.80910 0.88999 0.87446 0.88462 0.92485 0.91374 0.92096 0.90697 0.90904 0.89571 0.89395 0.77853 0.95793 0.96120 0.77776 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 36.01 0.38 -0.06 16 2 C 0.07 0.62 7.22 -82.41 -0.59 0.02 16 3 C -0.28 -2.41 10.74 -40.01 -0.43 -2.84 16 4 C 0.06 0.53 11.45 -17.22 -0.20 0.34 16 5 N -0.37 -3.77 3.68 -61.37 -0.23 -3.99 16 6 C 0.15 1.53 5.31 -4.05 -0.02 1.51 16 7 C -0.12 -1.18 2.12 -91.77 -0.20 -1.38 16 8 H 0.10 1.00 7.40 -51.93 -0.38 0.62 16 9 C -0.17 -1.48 8.55 37.16 0.32 -1.16 16 10 C 0.53 6.65 6.58 -10.98 -0.07 6.58 16 11 O -0.54 -8.25 14.29 -3.15 -0.04 -8.30 16 12 N -0.60 -6.98 2.83 -181.58 -0.51 -7.49 16 13 C 0.07 0.63 8.80 59.85 0.53 1.15 16 14 C 0.08 1.08 5.15 -4.04 -0.02 1.06 16 15 C 0.09 1.43 3.27 -26.73 -0.09 1.35 16 16 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 17 O -0.55 -10.21 12.09 -43.94 -0.53 -10.74 16 18 C 0.13 2.53 5.90 -4.05 -0.02 2.51 16 19 N -0.73 -18.95 5.55 -59.91 -0.33 -19.28 16 20 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 24 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 N -0.29 -3.21 9.62 33.67 0.32 -2.89 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.11 1.03 7.88 -51.92 -0.41 0.63 16 36 H 0.10 0.96 5.36 -51.93 -0.28 0.68 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.52 4.53 -51.93 -0.24 0.28 16 39 H 0.06 0.41 6.95 -51.93 -0.36 0.05 16 40 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 41 H 0.07 0.56 6.01 -51.93 -0.31 0.24 16 42 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 43 H 0.09 1.19 7.42 -51.93 -0.39 0.81 16 44 H 0.37 6.55 8.45 45.56 0.38 6.93 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.39 10.92 7.67 -40.82 -0.31 10.61 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -35.36 388.23 -7.35 -42.71 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -6.91 Total: 13.10 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.67 Total: 1.47 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.02 Total: -61.84 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.58 Total: -19.04 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.36 -7.35 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755780892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.492 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds