Wall clock time and date at job start Fri Apr 10 2020 18:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39865 * 125.90118 * 2 1 4 4 C 1.35316 * 107.92111 * 179.97438 * 3 2 1 5 5 N 1.34948 * 107.74379 * 359.97438 * 4 3 2 6 6 C 1.46506 * 126.03285 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46738 * 125.00199 * 6 5 4 8 8 H 1.08995 * 109.47542 * 54.99519 * 7 6 5 9 9 C 1.53004 * 109.47043 * 294.99647 * 7 6 5 10 10 C 1.50703 * 109.46779 * 174.99773 * 7 6 5 11 11 O 1.21283 * 120.00199 * 5.38296 * 10 7 6 12 12 N 1.34781 * 119.99749 * 185.65381 * 10 7 6 13 13 C 1.46500 * 119.99881 * 4.67983 * 12 10 7 14 14 C 1.46496 * 119.99814 * 184.67540 * 12 10 7 15 15 C 1.52999 * 109.47313 * 90.00168 * 14 12 10 16 16 H 1.09011 * 109.46527 * 59.99946 * 15 14 12 17 17 O 1.42900 * 109.47135 * 300.00189 * 15 14 12 18 18 C 1.52998 * 109.47612 * 179.97438 * 15 14 12 19 19 N 1.46499 * 109.47273 * 185.00234 * 18 15 14 20 20 C 1.36938 * 119.99899 * 179.97438 * 19 18 15 21 21 H 1.07998 * 120.00186 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99996 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99757 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00056 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47329 * 89.99729 * 24 22 20 26 26 H 1.48500 * 109.47309 * 209.99932 * 24 22 20 27 27 H 1.48507 * 109.47167 * 329.99766 * 24 22 20 28 28 N 1.30840 * 125.89547 * 180.29641 * 2 1 3 29 29 H 1.09003 * 109.46929 * 90.00067 * 1 2 3 30 30 H 1.08997 * 109.47630 * 210.00298 * 1 2 3 31 31 H 1.09003 * 109.47470 * 330.00619 * 1 2 3 32 32 H 1.08007 * 126.03825 * 359.97438 * 3 2 1 33 33 H 1.08003 * 126.12486 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.47088 * 5.00224 * 6 5 4 35 35 H 1.08995 * 109.46772 * 245.00057 * 6 5 4 36 36 H 1.08997 * 109.47215 * 70.38456 * 9 7 6 37 37 H 1.09006 * 109.46968 * 190.38312 * 9 7 6 38 38 H 1.08996 * 109.47265 * 310.38100 * 9 7 6 39 39 H 1.08996 * 109.47105 * 95.83428 * 13 12 10 40 40 H 1.08998 * 109.46666 * 215.82668 * 13 12 10 41 41 H 1.08994 * 109.47566 * 335.82851 * 13 12 10 42 42 H 1.08997 * 109.47316 * 210.00327 * 14 12 10 43 43 H 1.09002 * 109.47553 * 330.00597 * 14 12 10 44 44 H 0.96695 * 114.00001 * 299.99693 * 17 15 14 45 45 H 1.09009 * 109.46753 * 305.00136 * 18 15 14 46 46 H 1.08994 * 109.47338 * 64.99895 * 18 15 14 47 47 H 0.96999 * 119.99858 * 0.02562 * 19 18 15 48 48 H 0.97001 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6142 0.7152 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0018 7 6 4.7117 -2.4689 1.1842 8 1 3.7705 -3.0170 1.1435 9 6 4.7872 -1.6814 2.4938 10 6 5.8620 -3.4401 1.1150 11 8 6.7187 -3.3061 0.2670 12 7 5.9357 -4.4609 1.9920 13 6 4.8470 -4.6871 2.9458 14 6 7.1045 -5.3441 1.9914 15 6 8.1654 -4.7869 2.9427 16 1 7.7546 -4.7283 3.9508 17 8 8.5544 -3.4816 2.5104 18 6 9.3858 -5.7096 2.9426 19 7 10.3513 -5.2424 3.9406 20 6 11.5293 -5.9168 4.1216 21 1 11.7468 -6.7927 3.5285 22 6 12.4443 -5.4739 5.0668 23 7 13.5768 -6.1217 5.2404 24 14 12.0685 -3.9585 6.0923 25 1 11.3590 -4.3634 7.3323 26 1 13.3376 -3.2748 6.4490 27 1 11.2100 -3.0323 5.3108 28 7 2.2741 -1.0599 -0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.9923 2.1598 -0.0004 33 1 4.4892 1.3485 0.0003 34 1 5.6884 -0.8904 0.0908 35 1 4.8256 -2.0666 -0.9291 36 1 3.8654 -1.1162 2.6315 37 1 4.9172 -2.3728 3.3265 38 1 5.6326 -0.9945 2.4566 39 1 4.1650 -5.4382 2.5473 40 1 5.2599 -5.0370 3.8920 41 1 4.3063 -3.7548 3.1079 42 1 6.8078 -6.3397 2.3212 43 1 7.5153 -5.4026 0.9835 44 1 8.9295 -3.4579 1.6194 45 1 9.0735 -6.7250 3.1866 46 1 9.8491 -5.6991 1.9561 47 1 10.1557 -4.4560 4.4736 48 1 14.2160 -5.8124 5.9012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755780893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:11 Heat of formation + Delta-G solvation = -14.171675 kcal Electronic energy + Delta-G solvation = -27818.478378 eV Core-core repulsion = 23910.043438 eV Total energy + Delta-G solvation = -3908.434940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.19171 -41.26704 -38.89763 -36.57174 -36.38943 -35.90535 -33.57204 -33.38290 -31.28281 -30.78732 -29.67997 -28.12056 -27.35200 -26.59760 -24.67317 -23.30885 -22.64549 -22.02174 -20.70202 -19.93741 -19.82393 -18.58708 -17.84912 -17.34698 -17.08005 -16.68801 -16.56534 -16.44486 -16.18022 -15.48550 -15.27323 -15.02483 -14.99341 -14.70480 -14.33914 -14.27547 -13.97009 -13.88696 -13.85405 -13.62118 -13.50780 -13.31184 -13.24884 -12.94714 -12.86279 -12.84017 -12.61684 -12.31915 -12.29548 -12.18737 -11.93248 -11.87124 -11.45187 -11.22023 -11.03239 -10.76559 -10.16604 -9.61196 -9.45234 -9.33706 -8.06093 -5.39316 0.97308 1.36087 1.39084 1.45540 1.47440 1.55437 1.90065 2.02331 2.45710 3.23257 3.31658 3.36834 3.46547 3.62705 3.72844 3.92041 3.97087 4.00481 4.08508 4.15526 4.17855 4.29648 4.31980 4.48544 4.50948 4.53684 4.62129 4.63879 4.76682 4.77982 4.84381 4.86741 4.87271 4.89302 4.97324 5.09838 5.16252 5.18671 5.28255 5.41953 5.71079 5.82351 6.11679 6.17678 6.31257 6.72973 6.82421 7.04554 7.08854 7.80972 7.99490 9.15135 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.002323 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.849822 B =12049.571032 C =12461.068841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.056 3.944 3 C -0.284 4.284 4 C 0.054 3.946 5 N -0.375 5.375 6 C 0.157 3.843 7 C -0.107 4.107 8 H 0.111 0.889 9 C -0.139 4.139 10 C 0.526 3.474 11 O -0.571 6.571 12 N -0.604 5.604 13 C 0.056 3.944 14 C 0.092 3.908 15 C 0.095 3.905 16 H 0.100 0.900 17 O -0.565 6.565 18 C 0.125 3.875 19 N -0.753 5.753 20 C -0.237 4.237 21 H 0.058 0.942 22 C -0.063 4.063 23 N -0.982 5.982 24 Si 0.957 3.043 25 H -0.274 1.274 26 H -0.295 1.295 27 H -0.259 1.259 28 N -0.332 5.332 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.165 0.835 33 H 0.198 0.802 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.379 0.621 45 H 0.045 0.955 46 H 0.025 0.975 47 H 0.366 0.634 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.887 13.238 -9.159 34.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.110 4.110 3 C -0.313 4.313 4 C -0.091 4.091 5 N -0.157 5.157 6 C 0.036 3.964 7 C -0.129 4.129 8 H 0.129 0.871 9 C -0.196 4.196 10 C 0.314 3.686 11 O -0.451 6.451 12 N -0.335 5.335 13 C -0.086 4.086 14 C -0.032 4.032 15 C 0.034 3.966 16 H 0.118 0.882 17 O -0.371 6.371 18 C -0.002 4.002 19 N -0.399 5.399 20 C -0.367 4.367 21 H 0.076 0.924 22 C -0.255 4.255 23 N -0.632 5.632 24 Si 0.784 3.216 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.184 1.184 28 N -0.155 5.155 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.183 0.817 33 H 0.215 0.785 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.227 0.773 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.200 0.800 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -30.360 11.922 -9.064 33.853 hybrid contribution 0.940 1.110 0.115 1.459 sum -29.420 13.032 -8.949 33.399 Atomic orbital electron populations 1.20261 0.84955 1.04041 1.03597 1.22948 0.98309 0.90889 0.98806 1.21707 0.91560 1.00544 1.17474 1.23126 1.00939 0.84649 1.00423 1.48643 1.04931 1.05186 1.56930 1.21442 0.83906 0.92560 0.98523 1.21385 0.98180 0.95864 0.97494 0.87108 1.21858 1.02586 1.00313 0.94855 1.20577 0.86565 0.81235 0.80173 1.90666 1.42826 1.74170 1.37408 1.47672 1.20618 1.29613 1.35636 1.22376 0.89354 1.03945 0.92895 1.22066 0.85965 0.94277 1.00855 1.22447 0.92446 0.82871 0.98802 0.88202 1.86477 1.83944 1.28940 1.37774 1.21437 0.89697 0.97107 0.91945 1.42600 1.18939 1.33123 1.45260 1.19056 0.94357 1.07372 1.15962 0.92382 1.25504 0.96266 1.02400 1.01335 1.69881 1.10701 1.43707 1.38911 0.85381 0.77012 0.80073 0.79147 1.20041 1.22187 1.18358 1.77217 0.87215 1.24184 1.26916 0.89896 0.91146 0.88691 0.81719 0.78528 0.87105 0.90210 0.91529 0.90078 0.92317 0.90627 0.89909 0.88837 0.86832 0.90145 0.77327 0.93676 0.95672 0.80023 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.45 71.24 0.74 0.02 16 2 C 0.06 0.97 7.22 43.10 0.31 1.29 16 3 C -0.28 -4.21 10.74 21.99 0.24 -3.97 16 4 C 0.05 0.82 11.45 83.54 0.96 1.77 16 5 N -0.38 -6.97 3.32 -348.05 -1.16 -8.13 16 6 C 0.16 2.86 5.20 86.38 0.45 3.31 16 7 C -0.11 -1.88 1.98 -11.54 -0.02 -1.90 16 8 H 0.11 1.89 7.65 -2.39 -0.02 1.87 16 9 C -0.14 -2.19 8.45 71.98 0.61 -1.59 16 10 C 0.53 11.77 6.41 87.66 0.56 12.34 16 11 O -0.57 -16.46 14.68 -1.20 -0.02 -16.48 16 12 N -0.60 -11.74 2.83 -846.77 -2.39 -14.13 16 13 C 0.06 0.70 9.72 127.77 1.24 1.94 16 14 C 0.09 2.01 5.20 86.38 0.45 2.46 16 15 C 0.09 2.69 3.27 30.59 0.10 2.79 16 16 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 17 O -0.57 -18.24 12.20 -147.14 -1.80 -20.04 16 18 C 0.13 4.57 5.90 86.38 0.51 5.08 16 19 N -0.75 -35.77 5.35 -343.45 -1.84 -37.61 16 20 C -0.24 -13.73 10.47 84.03 0.88 -12.85 16 21 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 22 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 23 N -0.98 -63.65 13.97 21.65 0.30 -63.35 16 24 Si 0.96 46.81 27.74 68.60 1.90 48.71 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 27 H -0.26 -11.90 6.52 99.48 0.65 -11.25 16 28 N -0.33 -7.03 12.35 -47.39 -0.59 -7.62 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.11 1.86 8.04 -2.39 -0.02 1.84 16 35 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 36 H 0.07 1.05 8.04 -2.39 -0.02 1.03 16 37 H 0.08 1.18 5.41 -2.38 -0.01 1.17 16 38 H 0.06 1.03 8.09 -2.39 -0.02 1.01 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.93 8.11 -2.39 -0.02 0.91 16 41 H 0.09 1.01 4.12 -2.39 -0.01 1.00 16 42 H 0.11 1.91 8.07 -2.39 -0.02 1.89 16 43 H 0.08 1.97 7.36 -2.39 -0.02 1.95 16 44 H 0.38 11.77 8.62 -74.06 -0.64 11.14 16 45 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.37 17.13 5.53 -92.71 -0.51 16.62 16 48 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -78.17 391.67 1.67 -76.50 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.24 Total: 34.81 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 7.49 Total: 7.33 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -5.67 Total: -130.84 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.81 Total: -36.51 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.90 Total: 48.71 kcal Total: -78.17 1.67 -76.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755780893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.325 kcal (2) G-P(sol) polarization free energy of solvation -78.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds