Wall clock time and date at job start Fri Apr 10 2020 18:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39864 * 125.89999 * 2 1 4 4 C 1.35316 * 107.91828 * 179.86198 * 3 2 1 5 5 N 1.34952 * 107.74600 * 0.40147 * 4 3 2 6 6 C 1.46497 * 126.03662 * 179.75302 * 5 4 3 7 7 C 1.52995 * 109.47654 * 124.96854 * 6 5 4 8 8 H 1.09003 * 109.47311 * 304.99914 * 7 6 5 9 9 C 1.53002 * 109.46746 * 64.99483 * 7 6 5 10 10 C 1.50702 * 109.47557 * 184.99684 * 7 6 5 11 11 O 1.21277 * 119.99764 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99957 * 180.02562 * 10 7 6 13 13 C 1.46497 * 120.00254 * 359.97438 * 12 10 7 14 14 C 1.46498 * 119.99837 * 180.02562 * 12 10 7 15 15 C 1.53003 * 109.47318 * 89.99687 * 14 12 10 16 16 H 1.08998 * 109.47030 * 305.00077 * 15 14 12 17 17 O 1.42896 * 109.46803 * 65.00079 * 15 14 12 18 18 C 1.52996 * 109.47207 * 185.00221 * 15 14 12 19 19 N 1.46497 * 109.47031 * 180.02562 * 18 15 14 20 20 C 1.36934 * 119.99984 * 180.02562 * 19 18 15 21 21 H 1.08006 * 120.00365 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00216 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00505 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99872 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46888 * 90.00513 * 24 22 20 26 26 H 1.48502 * 109.47065 * 210.00388 * 24 22 20 27 27 H 1.48493 * 109.46740 * 330.00182 * 24 22 20 28 28 N 1.30836 * 125.89591 * 180.31016 * 2 1 3 29 29 H 1.08999 * 109.46995 * 269.71428 * 1 2 3 30 30 H 1.08994 * 109.46790 * 29.71114 * 1 2 3 31 31 H 1.08997 * 109.47305 * 149.71555 * 1 2 3 32 32 H 1.07995 * 126.04278 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.12602 * 180.14496 * 4 3 2 34 34 H 1.09002 * 109.46907 * 244.96896 * 6 5 4 35 35 H 1.09007 * 109.47224 * 4.96492 * 6 5 4 36 36 H 1.08999 * 109.47449 * 299.99873 * 9 7 6 37 37 H 1.08999 * 109.47201 * 60.00832 * 9 7 6 38 38 H 1.09004 * 109.46725 * 180.02562 * 9 7 6 39 39 H 1.08996 * 109.46945 * 89.99629 * 13 12 10 40 40 H 1.08994 * 109.47290 * 210.00341 * 13 12 10 41 41 H 1.09001 * 109.47020 * 330.00167 * 13 12 10 42 42 H 1.08994 * 109.47064 * 210.00038 * 14 12 10 43 43 H 1.09005 * 109.46843 * 330.00209 * 14 12 10 44 44 H 0.96700 * 114.00356 * 59.99794 * 17 15 14 45 45 H 1.09007 * 109.47103 * 300.00042 * 18 15 14 46 46 H 1.08994 * 109.47501 * 60.00186 * 18 15 14 47 47 H 0.96997 * 120.00224 * 359.97438 * 19 18 15 48 48 H 0.96996 * 120.00541 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0031 5 7 3.6087 -0.6343 -0.0040 6 6 4.7898 -1.5009 -0.0088 7 6 4.7122 -2.4754 1.1681 8 1 4.5874 -1.9162 2.0953 9 6 3.5201 -3.4147 0.9747 10 6 5.9825 -3.2834 1.2360 11 8 6.8634 -3.0977 0.4233 12 7 6.1397 -4.2123 2.1998 13 6 5.0758 -4.4362 3.1818 14 6 7.3748 -4.9974 2.2661 15 6 8.3911 -4.2752 3.1529 16 1 8.5402 -3.2609 2.7829 17 8 7.9022 -4.2258 4.4947 18 6 9.7217 -5.0299 3.1224 19 7 10.6946 -4.3388 3.9720 20 6 11.9649 -4.8337 4.1005 21 1 12.2495 -5.7338 3.5758 22 6 12.8870 -4.1786 4.9051 23 7 14.1079 -4.6545 5.0290 24 14 12.3952 -2.6213 5.8121 25 1 11.8543 -2.9769 7.1486 26 1 13.5845 -1.7473 5.9760 27 1 11.3559 -1.9019 5.0328 28 7 2.2742 -1.0599 -0.0057 29 1 -0.3633 -0.0051 1.0276 30 1 -0.3633 0.8925 -0.5093 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9924 2.1597 -0.0004 33 1 4.4892 1.3484 0.0061 34 1 4.8253 -2.0615 -0.9430 35 1 5.6885 -0.8909 0.0832 36 1 2.6013 -2.8304 0.9256 37 1 3.6449 -3.9741 0.0475 38 1 3.4645 -4.1087 1.8134 39 1 4.3935 -5.2006 2.8102 40 1 5.5142 -4.7670 4.1233 41 1 4.5283 -3.5075 3.3424 42 1 7.1588 -5.9796 2.6864 43 1 7.7856 -5.1136 1.2631 44 1 7.7462 -5.0949 4.8888 45 1 9.5726 -6.0443 3.4924 46 1 10.0947 -5.0676 2.0990 47 1 10.4393 -3.5302 4.4430 48 1 14.7523 -4.1966 5.5909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755780894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:15 Heat of formation + Delta-G solvation = 15.423756 kcal Electronic energy + Delta-G solvation = -27670.956164 eV Core-core repulsion = 23763.804578 eV Total energy + Delta-G solvation = -3907.151586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55854 -40.40445 -37.80542 -35.63966 -35.42201 -34.18191 -32.85766 -31.50870 -30.32767 -29.83378 -29.02538 -27.19578 -26.11152 -25.70136 -23.33003 -22.09153 -21.32610 -21.23690 -20.08179 -19.27175 -17.88705 -17.72971 -16.68599 -16.56830 -16.22400 -15.58089 -15.48460 -15.18797 -14.69689 -14.45744 -14.33092 -14.08647 -13.81949 -13.59070 -13.41553 -13.32484 -13.21548 -13.02059 -12.81345 -12.57712 -12.48615 -12.38948 -12.27407 -12.13757 -11.66147 -11.56662 -11.47654 -11.24835 -10.90623 -10.83905 -10.66520 -10.25960 -10.05442 -9.80926 -9.58522 -9.45325 -8.91833 -8.83515 -8.66943 -7.23815 -5.76831 -3.12386 1.59881 2.12135 2.39341 2.50375 2.81587 3.40691 3.46390 3.47294 4.07479 4.17750 4.37472 4.51168 4.52853 4.57582 4.61133 4.76653 4.84896 4.88514 4.96396 5.05802 5.10378 5.19743 5.23224 5.27514 5.35249 5.40201 5.48109 5.51791 5.53077 5.54980 5.57411 5.64824 5.68192 5.81095 5.83181 5.83588 6.01658 6.26917 6.44320 6.47493 6.60307 6.72645 7.12208 7.46090 7.81846 7.92569 7.99530 8.41988 9.21808 9.94135 10.14420 11.41269 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020686 B = 0.002343 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.275035 B =11947.250082 C =12541.290032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.066 3.934 3 C -0.275 4.275 4 C 0.059 3.941 5 N -0.369 5.369 6 C 0.153 3.847 7 C -0.118 4.118 8 H 0.101 0.899 9 C -0.165 4.165 10 C 0.521 3.479 11 O -0.539 6.539 12 N -0.602 5.602 13 C 0.078 3.922 14 C 0.086 3.914 15 C 0.083 3.917 16 H 0.099 0.901 17 O -0.555 6.555 18 C 0.131 3.869 19 N -0.749 5.749 20 C -0.246 4.246 21 H 0.089 0.911 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.887 3.113 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 N -0.292 5.292 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.174 0.826 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.370 0.630 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.366 0.634 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.428 6.567 -8.912 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 C -0.304 4.304 4 C -0.087 4.087 5 N -0.150 5.150 6 C 0.031 3.969 7 C -0.140 4.140 8 H 0.119 0.881 9 C -0.222 4.222 10 C 0.308 3.692 11 O -0.416 6.416 12 N -0.334 5.334 13 C -0.065 4.065 14 C -0.037 4.037 15 C 0.022 3.978 16 H 0.117 0.883 17 O -0.360 6.360 18 C 0.002 3.998 19 N -0.395 5.395 20 C -0.376 4.376 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.718 3.282 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.203 1.203 28 N -0.116 5.116 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.191 0.809 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.217 0.783 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.199 0.801 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.529 5.792 -9.490 31.552 hybrid contribution 0.002 1.415 0.867 1.660 sum -29.527 7.207 -8.623 31.593 Atomic orbital electron populations 1.20160 0.86815 1.03186 1.02865 1.22413 0.96949 0.90967 0.99666 1.21374 0.91625 0.99788 1.17623 1.22627 0.99858 0.84929 1.01274 1.48629 1.05256 1.04644 1.56492 1.21542 0.83548 0.92409 0.99386 1.21467 0.94938 0.97364 1.00250 0.88128 1.22289 0.97997 0.99390 1.02514 1.20356 0.88022 0.80148 0.80664 1.90741 1.43527 1.67031 1.40303 1.47638 1.18017 1.38063 1.29709 1.22010 0.90159 1.01782 0.92561 1.22232 0.84574 0.94097 1.02781 1.22604 0.92050 1.01206 0.81921 0.88273 1.86582 1.87502 1.33974 1.27951 1.21189 0.88249 0.94788 0.95546 1.42566 1.10162 1.30442 1.56348 1.19049 0.86010 1.08495 1.24045 0.89290 1.24670 0.95611 0.98798 1.00038 1.69705 1.03951 1.41268 1.43227 0.86494 0.77249 0.84246 0.80231 1.21041 1.21788 1.20326 1.77135 0.86548 1.22509 1.25406 0.90631 0.90562 0.91025 0.83672 0.80930 0.88867 0.87562 0.88395 0.92401 0.91307 0.92318 0.90203 0.91034 0.89831 0.88572 0.78350 0.95334 0.94632 0.80067 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.45 36.01 0.38 -0.04 16 2 C 0.07 0.60 7.22 -82.41 -0.59 0.01 16 3 C -0.27 -2.30 10.74 -40.01 -0.43 -2.73 16 4 C 0.06 0.50 11.45 -17.22 -0.20 0.31 16 5 N -0.37 -3.63 3.68 -61.37 -0.23 -3.86 16 6 C 0.15 1.46 5.31 -4.05 -0.02 1.44 16 7 C -0.12 -1.12 2.12 -91.77 -0.20 -1.32 16 8 H 0.10 0.93 7.40 -51.93 -0.38 0.55 16 9 C -0.16 -1.40 8.55 37.16 0.32 -1.08 16 10 C 0.52 6.34 7.08 -10.98 -0.08 6.26 16 11 O -0.54 -8.42 15.50 5.56 0.09 -8.33 16 12 N -0.60 -6.56 2.84 -181.58 -0.52 -7.07 16 13 C 0.08 0.60 8.62 59.85 0.52 1.12 16 14 C 0.09 1.03 5.06 -4.04 -0.02 1.01 16 15 C 0.08 1.27 3.30 -26.73 -0.09 1.18 16 16 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 17 O -0.56 -8.22 11.90 -35.23 -0.42 -8.64 16 18 C 0.13 2.49 5.92 -4.05 -0.02 2.46 16 19 N -0.75 -18.33 5.30 -59.91 -0.32 -18.65 16 20 C -0.25 -7.13 10.47 -15.06 -0.16 -7.29 16 21 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -29.79 13.97 55.49 0.78 -29.02 16 24 Si 0.89 22.96 27.74 -169.99 -4.71 18.25 16 25 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 28 N -0.29 -3.10 9.62 33.67 0.32 -2.77 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.11 0.97 7.88 -51.92 -0.41 0.56 16 36 H 0.10 0.92 5.36 -51.93 -0.28 0.64 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.49 4.53 -51.93 -0.24 0.25 16 39 H 0.06 0.36 6.95 -51.93 -0.36 0.00 16 40 H 0.08 0.59 7.10 -51.93 -0.37 0.23 16 41 H 0.07 0.51 6.01 -51.93 -0.31 0.20 16 42 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 43 H 0.10 1.27 7.42 -51.93 -0.39 0.88 16 44 H 0.37 4.19 9.04 45.56 0.41 4.61 16 45 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.37 9.04 5.40 -40.82 -0.22 8.82 16 48 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -36.66 385.86 -6.67 -43.33 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.78 Total: 9.58 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.69 Total: 1.37 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.04 Total: -61.37 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.33 Total: -16.97 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.66 -6.67 -43.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755780894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.754 kcal (2) G-P(sol) polarization free energy of solvation -36.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds