Wall clock time and date at job start Fri Apr 10 2020 18:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21278 * 120.00264 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46509 * 119.99552 * 359.97438 * 11 9 8 13 13 C 1.46498 * 120.00152 * 179.97438 * 11 9 8 14 14 C 1.53001 * 109.47282 * 89.99841 * 13 11 9 15 15 H 1.08997 * 109.46992 * 59.99931 * 14 13 11 16 16 O 1.42900 * 109.46612 * 299.99909 * 14 13 11 17 17 C 1.52997 * 109.47326 * 180.02562 * 14 13 11 18 18 N 1.46494 * 109.47254 * 184.99913 * 17 14 13 19 19 C 1.36934 * 119.99861 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00518 * 0.02562 * 19 18 17 21 21 C 1.38821 * 119.99998 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99739 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47126 * 60.00112 * 23 21 19 25 25 H 1.48498 * 109.46784 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47120 * 299.99799 * 23 21 19 27 27 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 36 36 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 37 37 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 38 38 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 39 39 H 1.08999 * 109.46873 * 90.00483 * 12 11 9 40 40 H 1.08998 * 109.46794 * 210.00088 * 12 11 9 41 41 H 1.08994 * 109.47243 * 330.00062 * 12 11 9 42 42 H 1.08999 * 109.46746 * 209.99489 * 13 11 9 43 43 H 1.08996 * 109.46702 * 329.99618 * 13 11 9 44 44 H 0.96698 * 114.00366 * 299.99748 * 16 14 13 45 45 H 1.09008 * 109.46528 * 305.00019 * 17 14 13 46 46 H 1.08999 * 109.47028 * 64.99769 * 17 14 13 47 47 H 0.97000 * 120.00159 * 359.97438 * 18 17 14 48 48 H 0.96998 * 120.00307 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7819 -3.4459 -1.2455 11 7 4.9825 -5.2860 -2.4684 12 6 4.5110 -6.0867 -3.6011 13 6 6.0966 -5.7647 -1.6463 14 6 5.5528 -6.6097 -0.4926 15 1 5.0047 -7.4623 -0.8936 16 8 4.6768 -5.8143 0.3087 17 6 6.7162 -7.1091 0.3664 18 7 6.2071 -8.0144 1.3995 19 6 7.0715 -8.5894 2.2925 20 1 8.1285 -8.3751 2.2355 21 6 6.5890 -9.4469 3.2718 22 7 5.3008 -9.7076 3.3416 23 14 7.7682 -10.2317 4.4895 24 1 8.4679 -9.1695 5.2558 25 1 7.0084 -11.0981 5.4261 26 1 8.7655 -11.0509 3.7550 27 7 2.3857 -2.0399 -1.2766 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.9883 0.8861 -2.6859 36 1 2.8977 -0.9843 -4.2880 37 1 2.4289 -4.3371 -2.9898 38 1 3.5791 -3.5005 -4.0602 39 1 5.0579 -5.8020 -4.5000 40 1 4.6783 -7.1436 -3.3935 41 1 3.4461 -5.9104 -3.7525 42 1 6.7647 -6.3713 -2.2575 43 1 6.6447 -4.9121 -1.2454 44 1 5.0983 -5.0364 0.6988 45 1 7.4303 -7.6406 -0.2627 46 1 7.2098 -6.2598 0.8388 47 1 5.2577 -8.2066 1.4510 48 1 4.9636 -10.3070 4.0256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755784207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:17 Heat of formation + Delta-G solvation = -22.551227 kcal Electronic energy + Delta-G solvation = -27622.637260 eV Core-core repulsion = 23713.838956 eV Total energy + Delta-G solvation = -3908.798305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18665 -40.81756 -38.66566 -36.77956 -36.29983 -35.85107 -33.29319 -32.94355 -31.01318 -30.78003 -29.00059 -28.21441 -27.87181 -26.56638 -24.60506 -23.59408 -22.67032 -21.31468 -20.92038 -19.79363 -19.25181 -18.13895 -17.95976 -17.67997 -16.96950 -16.58502 -16.39446 -16.27026 -16.01178 -15.49151 -15.39564 -14.95987 -14.75844 -14.55180 -14.33791 -14.13207 -13.97104 -13.66550 -13.64410 -13.53053 -13.24776 -13.16287 -13.04564 -12.97234 -12.81535 -12.74257 -12.55663 -12.34132 -12.22292 -12.06859 -12.03456 -11.83136 -11.38800 -11.13622 -10.98300 -10.72091 -10.13210 -9.47258 -9.40340 -9.04397 -7.96506 -5.27149 1.07973 1.44164 1.48936 1.55047 1.64577 1.75283 1.82753 2.26140 2.54339 3.34175 3.47592 3.50197 3.72083 3.78409 3.84447 3.93654 4.00743 4.09216 4.10009 4.22555 4.29070 4.35602 4.47285 4.53915 4.55647 4.58839 4.62870 4.70784 4.76509 4.82975 4.85915 4.88325 4.89092 4.94543 5.02045 5.13932 5.17724 5.22185 5.24236 5.43564 5.57336 5.78021 6.23738 6.28926 6.49392 6.76534 6.92721 7.29721 7.34046 8.05615 8.29234 9.26910 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.002509 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.867352 B =11159.124254 C =12488.768338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 C -0.154 4.154 4 N -0.373 5.373 5 C 0.053 3.947 6 C -0.280 4.280 7 C 0.062 3.938 8 C -0.050 4.050 9 C 0.512 3.488 10 O -0.568 6.568 11 N -0.612 5.612 12 C 0.068 3.932 13 C 0.098 3.902 14 C 0.095 3.905 15 H 0.090 0.910 16 O -0.566 6.566 17 C 0.125 3.875 18 N -0.742 5.742 19 C -0.251 4.251 20 H 0.077 0.923 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.980 3.020 24 H -0.279 1.279 25 H -0.294 1.294 26 H -0.272 1.272 27 N -0.320 5.320 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.207 0.793 36 H 0.172 0.828 37 H 0.117 0.883 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.373 0.627 45 H 0.043 0.957 46 H 0.017 0.983 47 H 0.373 0.627 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 22.617 -20.987 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 C -0.211 4.211 4 N -0.157 5.157 5 C -0.093 4.093 6 C -0.309 4.309 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.301 3.699 10 O -0.446 6.446 11 N -0.345 5.345 12 C -0.074 4.074 13 C -0.026 4.026 14 C 0.035 3.965 15 H 0.108 0.892 16 O -0.371 6.371 17 C -0.003 4.003 18 N -0.384 5.384 19 C -0.382 4.382 20 H 0.095 0.905 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.808 3.192 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.198 1.198 27 N -0.142 5.142 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.223 0.777 36 H 0.190 0.810 37 H 0.135 0.865 38 H 0.165 0.835 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.220 0.780 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.205 0.795 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.410 22.076 -19.323 30.520 hybrid contribution 0.732 -0.198 0.604 0.970 sum -7.678 21.878 -18.719 29.799 Atomic orbital electron populations 1.22167 0.92308 1.02223 1.04533 1.21499 0.95792 0.93797 0.84781 1.22149 1.01439 0.92140 1.05420 1.49135 1.50171 1.06790 1.09559 1.23025 1.00254 1.01239 0.84756 1.21684 1.14908 0.91635 1.02681 1.22023 0.99971 0.96974 0.91534 1.20156 0.96301 0.91955 1.00703 1.20901 0.83866 0.80589 0.84580 1.90672 1.64930 1.57655 1.31351 1.47794 1.34564 1.20567 1.31568 1.22144 1.01486 0.96055 0.87708 1.21974 0.89058 0.98785 0.92794 1.22447 0.90819 0.93117 0.90139 0.89217 1.86521 1.40377 1.41509 1.68724 1.21441 0.95590 0.92655 0.90601 1.42476 1.07087 1.53826 1.35046 1.19650 0.91052 1.20105 1.07434 0.90460 1.25692 0.97707 1.01842 1.01884 1.69855 1.13600 1.41293 1.37403 0.85120 0.77688 0.77976 0.78404 1.20501 1.22038 1.19802 1.77442 1.21070 0.94863 1.20846 0.94075 0.88375 0.90696 0.90432 0.89604 0.88035 0.92918 0.77660 0.81028 0.86491 0.83454 0.89612 0.90622 0.89389 0.86648 0.90972 0.78013 0.93935 0.96496 0.79514 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.52 71.98 0.69 -1.46 16 2 C 0.14 2.58 3.93 44.99 0.18 2.76 16 3 C -0.15 -1.66 8.84 71.98 0.64 -1.02 16 4 N -0.37 -8.96 3.52 -327.49 -1.15 -10.11 16 5 C 0.05 0.95 10.59 83.54 0.89 1.84 16 6 C -0.28 -5.50 10.72 21.99 0.24 -5.26 16 7 C 0.06 1.61 6.01 43.10 0.26 1.87 16 8 C -0.05 -1.03 4.83 29.10 0.14 -0.89 16 9 C 0.51 14.57 7.17 87.65 0.63 15.20 16 10 O -0.57 -21.65 13.93 5.31 0.07 -21.58 16 11 N -0.61 -14.54 2.83 -846.76 -2.39 -16.93 16 12 C 0.07 0.94 10.24 127.77 1.31 2.25 16 13 C 0.10 2.65 5.15 86.38 0.44 3.09 16 14 C 0.10 3.42 3.27 30.59 0.10 3.52 16 15 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 16 O -0.57 -24.17 12.09 -140.64 -1.70 -25.87 16 17 C 0.12 5.27 5.90 86.38 0.51 5.78 16 18 N -0.74 -40.84 5.55 -343.45 -1.91 -42.74 16 19 C -0.25 -14.83 9.99 84.04 0.84 -13.99 16 20 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 21 C -0.08 -4.79 5.50 84.87 0.47 -4.32 16 22 N -0.97 -62.95 13.06 21.65 0.28 -62.67 16 23 Si 0.98 48.00 29.55 68.60 2.03 50.03 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 27 N -0.32 -10.32 11.92 -47.38 -0.56 -10.88 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 0.56 7.16 -2.39 -0.02 0.55 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.21 1.79 7.27 -2.91 -0.02 1.77 16 36 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.12 2.12 7.40 -2.39 -0.02 2.11 16 38 H 0.15 1.70 8.09 -2.38 -0.02 1.68 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 1.06 8.07 -2.39 -0.02 1.04 16 41 H 0.09 0.94 6.44 -2.39 -0.02 0.93 16 42 H 0.12 2.38 8.07 -2.39 -0.02 2.36 16 43 H 0.07 2.17 7.42 -2.39 -0.02 2.16 16 44 H 0.37 15.76 8.45 -74.06 -0.63 15.14 16 45 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.37 22.44 7.67 -92.71 -0.71 21.73 16 48 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -88.34 397.10 1.61 -86.73 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -0.37 Total: 44.68 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 7.32 Total: 9.35 kcal Atomic # 7 Polarization: -137.60 SS G_CDS: -5.74 Total: -143.34 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -1.63 Total: -47.45 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -88.34 1.61 -86.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755784207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.182 kcal (2) G-P(sol) polarization free energy of solvation -88.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds