Wall clock time and date at job start Fri Apr 10 2020 18:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47235 * 2 1 4 4 N 1.46506 * 109.46604 * 119.99437 * 2 1 3 5 5 C 1.34948 * 126.03813 * 274.71416 * 4 2 1 6 6 C 1.35318 * 107.74290 * 179.84379 * 5 4 2 7 7 C 1.39870 * 107.92236 * 0.42279 * 6 5 4 8 8 C 1.50698 * 125.89911 * 179.71882 * 7 6 5 9 9 C 1.50701 * 109.46822 * 124.99902 * 8 7 6 10 10 O 1.21279 * 120.00675 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99665 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99951 * 359.97438 * 11 9 8 13 13 C 1.46499 * 120.00164 * 180.02562 * 11 9 8 14 14 C 1.52997 * 109.47519 * 89.99479 * 13 11 9 15 15 H 1.08998 * 109.46960 * 305.00217 * 14 13 11 16 16 O 1.42895 * 109.47079 * 65.00458 * 14 13 11 17 17 C 1.53004 * 109.47203 * 185.00258 * 14 13 11 18 18 N 1.46490 * 109.47150 * 179.97438 * 17 14 13 19 19 C 1.36939 * 119.99870 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00363 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99668 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00643 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99764 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47435 * 90.00029 * 23 21 19 25 25 H 1.48505 * 109.47107 * 210.00017 * 23 21 19 26 26 H 1.48503 * 109.47005 * 329.99872 * 23 21 19 27 27 N 1.30841 * 108.19742 * 359.73723 * 7 6 5 28 28 H 1.08995 * 109.47528 * 300.00867 * 1 2 3 29 29 H 1.09002 * 109.46745 * 60.00543 * 1 2 3 30 30 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47279 * 239.99591 * 2 1 3 32 32 H 1.08995 * 109.47571 * 59.99159 * 3 2 1 33 33 H 1.08999 * 109.47100 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46811 * 299.99417 * 3 2 1 35 35 H 1.08002 * 126.12338 * 359.97438 * 5 4 2 36 36 H 1.08000 * 126.03532 * 180.16268 * 6 5 4 37 37 H 1.08998 * 109.47173 * 245.00308 * 8 7 6 38 38 H 1.08999 * 109.47072 * 5.00191 * 8 7 6 39 39 H 1.08994 * 109.47358 * 90.00544 * 12 11 9 40 40 H 1.09006 * 109.47171 * 210.00314 * 12 11 9 41 41 H 1.08997 * 109.47013 * 330.00285 * 12 11 9 42 42 H 1.08997 * 109.46821 * 210.00017 * 13 11 9 43 43 H 1.08995 * 109.46746 * 329.99119 * 13 11 9 44 44 H 0.96699 * 114.00427 * 59.99337 * 16 14 13 45 45 H 1.09005 * 109.46600 * 300.00266 * 17 14 13 46 46 H 1.08997 * 109.46816 * 59.99628 * 17 14 13 47 47 H 0.97004 * 120.00290 * 0.02562 * 18 17 14 48 48 H 0.97001 * 120.00670 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1983 -0.1378 2.4142 6 6 2.6560 -1.1050 3.2424 7 6 2.7685 -2.2870 2.5031 8 6 3.2475 -3.6157 3.0286 9 6 2.2075 -4.6703 2.7503 10 8 1.1790 -4.3725 2.1810 11 7 2.4205 -5.9446 3.1343 12 6 3.6633 -6.3045 3.8216 13 6 1.4099 -6.9700 2.8633 14 6 1.6813 -7.6055 1.4983 15 1 1.7251 -6.8266 0.7371 16 8 2.9273 -8.3040 1.5374 17 6 0.5570 -8.5866 1.1599 18 7 0.8166 -9.1947 -0.1473 19 6 -0.0604 -10.1118 -0.6621 20 1 -0.9436 -10.3866 -0.1046 21 6 0.1859 -10.6884 -1.9006 22 7 1.2624 -10.3540 -2.5799 23 14 -1.0108 -11.9390 -2.6031 24 1 -2.0410 -11.2386 -3.4114 25 1 -0.2746 -12.8992 -3.4641 26 1 -1.6681 -12.6734 -1.4923 27 7 2.3864 -2.0397 1.2765 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9564 0.8898 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 2.0087 0.8915 2.6805 36 1 2.8964 -0.9844 4.2884 37 1 4.1808 -3.8866 2.5351 38 1 3.4127 -3.5431 4.1036 39 1 3.5282 -6.1952 4.8976 40 1 3.9197 -7.3386 3.5909 41 1 4.4665 -5.6478 3.4876 42 1 1.4541 -7.7369 3.6365 43 1 0.4203 -6.5130 2.8611 44 1 2.9603 -9.0131 2.1940 45 1 0.5133 -9.3655 1.9212 46 1 -0.3934 -8.0538 1.1302 47 1 1.6100 -8.9482 -0.6480 48 1 1.4343 -10.7566 -3.4455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755784208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:21 Heat of formation + Delta-G solvation = 6.452946 kcal Electronic energy + Delta-G solvation = -27508.885204 eV Core-core repulsion = 23601.344614 eV Total energy + Delta-G solvation = -3907.540589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38544 -39.77043 -37.40466 -36.06358 -35.05597 -33.92673 -32.24003 -31.23200 -30.05853 -29.59637 -28.04362 -27.65414 -26.66901 -25.10111 -23.10946 -22.56312 -21.13589 -20.43095 -20.15850 -18.85596 -17.27441 -17.09858 -17.02357 -16.37782 -15.99450 -15.36839 -15.27994 -14.91695 -14.66167 -14.40017 -14.04424 -13.96499 -13.77173 -13.34697 -13.14950 -13.07875 -12.87280 -12.83656 -12.55731 -12.48468 -12.41073 -12.29012 -12.13129 -11.94478 -11.68420 -11.45090 -11.40056 -10.87714 -10.77240 -10.58366 -10.55937 -10.12296 -9.87500 -9.69381 -9.55266 -9.24386 -8.82907 -8.62600 -8.38370 -6.84489 -5.67996 -2.97179 1.86444 2.35570 2.63301 2.75286 3.16692 3.48282 3.52581 3.54730 4.16392 4.49539 4.50724 4.57859 4.62730 4.69366 4.72481 4.83898 4.97893 5.07903 5.08890 5.13490 5.21544 5.28547 5.30915 5.31810 5.43504 5.44706 5.49733 5.59356 5.62788 5.69532 5.77140 5.77510 5.85971 5.90578 5.95044 6.10183 6.32371 6.53655 6.59198 6.62896 6.85035 6.97481 7.42679 7.74350 7.74934 8.11373 8.30704 8.50251 9.61405 10.20441 10.56438 11.54484 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.002599 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.937509 B =10772.372832 C =12384.710468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.162 4.162 4 N -0.365 5.365 5 C 0.049 3.951 6 C -0.268 4.268 7 C 0.079 3.921 8 C -0.056 4.056 9 C 0.513 3.487 10 O -0.520 6.520 11 N -0.611 5.611 12 C 0.079 3.921 13 C 0.089 3.911 14 C 0.087 3.913 15 H 0.100 0.900 16 O -0.550 6.550 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 N -0.257 5.257 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.168 0.832 36 H 0.145 0.855 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.365 0.635 45 H 0.019 0.981 46 H 0.026 0.974 47 H 0.389 0.611 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 23.476 16.088 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 C -0.221 4.221 4 N -0.148 5.148 5 C -0.096 4.096 6 C -0.298 4.298 7 C -0.089 4.089 8 C -0.097 4.097 9 C 0.300 3.700 10 O -0.394 6.394 11 N -0.345 5.345 12 C -0.064 4.064 13 C -0.034 4.034 14 C 0.026 3.974 15 H 0.118 0.882 16 O -0.354 6.354 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 N -0.078 5.078 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.185 0.815 36 H 0.162 0.838 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.212 0.788 45 H 0.037 0.963 46 H 0.044 0.956 47 H 0.223 0.777 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.544 23.560 13.983 27.952 hybrid contribution -0.459 -0.668 0.718 1.083 sum 5.085 22.892 14.701 27.677 Atomic orbital electron populations 1.22233 0.93516 1.03837 1.02737 1.21261 0.94992 0.92477 0.86086 1.22185 1.02214 0.94113 1.03539 1.48883 1.50239 1.07211 1.08482 1.22352 1.01606 0.99711 0.85979 1.21277 1.15009 0.92396 1.01095 1.21531 1.00399 0.95093 0.91844 1.20037 0.98642 0.88386 1.02647 1.20382 0.88076 0.82737 0.78843 1.90760 1.27882 1.80686 1.40093 1.47705 1.19810 1.07857 1.59110 1.21830 0.85721 1.02856 0.95972 1.22172 0.92927 0.90612 0.97734 1.22544 0.84700 0.94216 0.95912 0.88205 1.86622 1.34902 1.51006 1.62903 1.21216 0.95293 0.93724 0.89989 1.42247 1.28234 1.49579 1.16946 1.19227 1.02260 1.15282 1.00437 0.91302 1.24760 0.97982 1.00769 0.97516 1.69685 1.27021 1.46705 1.14435 0.86187 0.80178 0.80985 0.78807 1.21744 1.21769 1.20807 1.77504 1.18352 0.92096 1.19847 0.92093 0.90539 0.91141 0.87895 0.91647 0.91529 0.89970 0.81465 0.83768 0.87349 0.87270 0.92947 0.90223 0.91172 0.90288 0.89034 0.78848 0.96340 0.95608 0.77658 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.52 37.16 0.35 -1.07 16 2 C 0.15 1.39 3.93 -67.93 -0.27 1.13 16 3 C -0.16 -0.91 8.83 37.15 0.33 -0.58 16 4 N -0.37 -4.41 3.53 -54.86 -0.19 -4.60 16 5 C 0.05 0.49 10.59 -17.22 -0.18 0.30 16 6 C -0.27 -2.87 10.72 -40.01 -0.43 -3.30 16 7 C 0.08 1.05 6.02 -82.40 -0.50 0.55 16 8 C -0.06 -0.61 4.83 -29.04 -0.14 -0.75 16 9 C 0.51 7.53 7.66 -10.98 -0.08 7.45 16 10 O -0.52 -10.06 15.14 5.56 0.08 -9.97 16 11 N -0.61 -7.73 2.84 -181.58 -0.52 -8.25 16 12 C 0.08 0.67 10.06 59.85 0.60 1.28 16 13 C 0.09 1.25 5.06 -4.04 -0.02 1.23 16 14 C 0.09 1.55 3.30 -26.73 -0.09 1.46 16 15 H 0.10 2.13 8.14 -51.93 -0.42 1.71 16 16 O -0.55 -9.51 11.91 -35.23 -0.42 -9.93 16 17 C 0.13 2.69 5.92 -4.05 -0.02 2.66 16 18 N -0.73 -19.71 5.49 -59.91 -0.33 -20.04 16 19 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -29.59 13.06 55.49 0.72 -28.86 16 23 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 27 N -0.26 -4.03 11.92 33.67 0.40 -3.63 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.30 7.15 -51.93 -0.37 -0.07 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.17 1.02 7.25 -52.49 -0.38 0.64 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.11 1.04 7.40 -51.93 -0.38 0.65 16 38 H 0.11 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.68 7.11 -51.93 -0.37 0.31 16 41 H 0.07 0.50 6.44 -51.93 -0.33 0.16 16 42 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.09 1.42 7.42 -51.93 -0.39 1.03 16 44 H 0.37 4.98 9.04 45.56 0.41 5.39 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.39 11.40 7.54 -40.82 -0.31 11.09 16 48 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -39.56 397.82 -7.13 -46.69 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.16 Total: 11.79 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.69 Total: 2.58 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: 0.09 Total: -65.37 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.34 Total: -19.91 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.56 -7.13 -46.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755784208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.141 kcal (2) G-P(sol) polarization free energy of solvation -39.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds