Wall clock time and date at job start Fri Apr 10 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47048 * 269.99861 * 3 2 1 5 5 H 1.48499 * 109.47187 * 29.99572 * 3 2 1 6 6 H 1.48499 * 109.47185 * 150.00262 * 3 2 1 7 7 C 1.37874 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99579 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00325 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47636 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47465 * 180.02562 * 10 9 7 12 12 O 1.42102 * 109.47287 * 70.94379 * 11 10 9 13 13 C 1.76198 * 103.00103 * 179.97438 * 11 10 9 14 14 N 1.28814 * 124.75340 * 90.00036 * 13 11 10 15 15 C 1.32513 * 117.11702 * 179.97438 * 14 13 11 16 16 C 1.48366 * 122.95761 * 179.97438 * 15 14 13 17 17 C 1.39364 * 120.09602 * 179.74701 * 16 15 14 18 18 C 1.37983 * 119.89776 * 179.74154 * 17 16 15 19 19 C 1.38535 * 120.09984 * 0.51696 * 18 17 16 20 20 F 1.35105 * 119.90323 * 179.74160 * 19 18 17 21 21 C 1.38541 * 120.19703 * 359.76225 * 19 18 17 22 22 C 1.37982 * 120.09536 * 359.97438 * 21 19 18 23 23 C 1.34823 * 114.08387 * 0.24790 * 15 14 13 24 24 S 1.70912 * 124.75948 * 270.00141 * 13 11 10 25 25 H 0.97002 * 120.00401 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47086 * 59.99700 * 9 7 2 27 27 H 1.09003 * 109.46872 * 300.00084 * 9 7 2 28 28 H 1.08995 * 109.46869 * 59.99585 * 10 9 7 29 29 H 1.09003 * 109.47125 * 300.00010 * 10 9 7 30 30 H 1.08001 * 120.04865 * 0.02562 * 17 16 15 31 31 H 1.08008 * 119.95090 * 180.23927 * 18 17 16 32 32 H 1.08000 * 119.94945 * 179.97438 * 21 19 18 33 33 H 1.08004 * 120.04693 * 180.02562 * 22 21 19 34 34 H 1.07991 * 126.06646 * 179.75632 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 16 5.8355 -2.6365 -0.0009 12 8 6.3092 -2.1990 1.2654 13 6 6.2319 -4.3533 0.0000 14 7 6.3972 -5.0693 -1.0580 15 6 6.6932 -6.3488 -0.8812 16 6 6.9099 -7.2902 -2.0073 17 6 7.2240 -8.6239 -1.7527 18 6 7.4195 -9.4971 -2.8031 19 6 7.3145 -9.0473 -4.1092 20 9 7.5119 -9.9045 -5.1346 21 6 7.0082 -7.7210 -4.3670 22 6 6.8058 -6.8421 -3.3228 23 6 6.7743 -6.7212 0.4120 24 16 6.4511 -5.3020 1.4046 25 1 -0.4851 0.8400 -0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6800 -0.8912 28 1 3.6579 -3.1505 -0.8907 29 1 3.6586 -3.1502 0.8893 30 1 7.3097 -8.9745 -0.7348 31 1 7.6591 -10.5317 -2.6067 32 1 6.9278 -7.3746 -5.3867 33 1 6.5666 -5.8084 -3.5246 34 1 6.9990 -7.7131 0.7751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187062085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:05 Heat of formation + Delta-G solvation = -40.417613 kcal Electronic energy + Delta-G solvation = -20907.988074 eV Core-core repulsion = 17358.782860 eV Total energy + Delta-G solvation = -3549.205215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 325.035 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.90911 -41.22274 -39.31866 -37.09784 -35.73251 -33.28913 -33.15407 -32.16317 -29.96117 -27.69394 -26.83399 -24.09069 -23.78506 -22.77389 -21.08917 -20.00128 -19.22536 -18.64682 -18.37279 -17.44657 -16.80699 -16.73879 -16.61457 -16.36031 -16.23665 -15.81345 -15.36903 -15.31890 -14.76376 -14.68648 -14.36067 -14.18072 -13.90529 -13.63852 -13.41015 -13.39799 -12.90149 -12.68448 -12.50922 -12.08690 -11.99992 -11.86514 -11.69349 -11.47891 -11.00408 -10.78698 -10.77431 -10.62526 -10.11038 -9.55386 -9.16944 -8.30474 -6.36502 -0.89193 -0.12031 0.11528 0.26891 0.37326 0.62388 1.38182 1.41503 1.42958 1.52286 1.76048 2.36654 2.65894 2.74585 3.04521 3.11881 3.25927 3.71279 3.93275 3.98114 4.03011 4.14786 4.29070 4.29478 4.47555 4.59253 4.77496 4.95412 5.00351 5.12576 5.25726 5.26889 5.29630 5.40762 5.57620 5.84844 6.24329 6.33583 6.70321 7.27926 8.86046 Molecular weight = 325.03amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.002780 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.151768 B =10070.910967 C =11015.470717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.942 3.058 4 H -0.247 1.247 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.531 4.531 8 H 0.032 0.968 9 C 0.000 4.000 10 C -0.420 4.420 11 S 1.429 4.571 12 O -0.882 6.882 13 C -0.326 4.326 14 N -0.387 5.387 15 C 0.075 3.925 16 C -0.043 4.043 17 C -0.071 4.071 18 C -0.150 4.150 19 C 0.089 3.911 20 F -0.146 7.146 21 C -0.155 4.155 22 C -0.068 4.068 23 C -0.214 4.214 24 S 0.178 5.822 25 H 0.268 0.732 26 H 0.013 0.987 27 H 0.057 0.943 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.201 -18.177 -6.763 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.764 3.236 4 H -0.171 1.171 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.051 0.949 9 C -0.039 4.039 10 C -0.559 4.559 11 S 1.623 4.377 12 O -0.878 6.878 13 C -0.694 4.694 14 N -0.102 5.102 15 C -0.060 4.060 16 C -0.046 4.046 17 C -0.090 4.090 18 C -0.169 4.169 19 C 0.069 3.931 20 F -0.124 7.124 21 C -0.174 4.174 22 C -0.087 4.087 23 C -0.354 4.354 24 S 0.433 5.567 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.083 0.917 30 H 0.179 0.821 31 H 0.179 0.821 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 20.624 -16.851 -6.167 27.338 hybrid contribution -1.206 -1.183 1.066 1.997 sum 19.418 -18.034 -5.101 26.987 Atomic orbital electron populations 1.70059 1.08374 1.28349 1.52263 1.26033 0.95660 1.03623 0.93891 0.85783 0.79464 0.78066 0.80318 1.17111 1.21191 1.17180 1.21338 0.91412 0.93238 1.51013 0.94940 1.19221 0.95196 0.91493 0.97959 1.27569 1.17274 1.03777 1.07326 1.69348 0.85840 0.76596 1.05950 1.92973 1.75156 1.72202 1.47438 1.36542 1.15055 1.22397 0.95418 1.66127 1.09459 1.04391 1.30265 1.19322 1.03846 0.90007 0.92804 1.18165 1.03255 0.92358 0.90822 1.21235 0.96473 0.90637 1.00691 1.21282 1.03209 1.02299 0.90091 1.18091 1.02032 0.88087 0.84873 1.91496 1.92613 1.69886 1.58449 1.21310 1.02758 0.91668 1.01627 1.21302 0.95765 1.00927 0.90671 1.27778 1.07223 1.04943 0.95472 1.84488 1.60444 0.99814 1.11990 0.92341 0.96821 0.92448 0.85336 0.91744 0.82130 0.82077 0.82865 0.83504 0.76253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 2 C 0.01 0.30 5.47 84.65 0.46 0.76 16 3 Si 0.94 42.89 27.47 68.60 1.88 44.77 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.53 -30.34 9.66 25.60 0.25 -30.09 16 8 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 9 C 0.00 0.01 4.05 29.85 0.12 0.13 16 10 C -0.42 -15.50 5.82 71.98 0.42 -15.08 16 11 S 1.43 41.59 13.86 -56.49 -0.78 40.81 16 12 O -0.88 -33.82 17.53 -148.98 -2.61 -36.43 16 13 C -0.33 -8.91 7.11 130.69 0.93 -7.98 16 14 N -0.39 -9.73 9.92 -190.16 -1.89 -11.61 16 15 C 0.07 1.60 6.65 40.96 0.27 1.88 16 16 C -0.04 -0.77 5.88 -20.04 -0.12 -0.89 16 17 C -0.07 -0.91 9.48 22.48 0.21 -0.70 16 18 C -0.15 -1.89 10.01 22.28 0.22 -1.67 16 19 C 0.09 1.41 7.30 22.41 0.16 1.58 16 20 F -0.15 -2.57 17.26 44.97 0.78 -1.79 16 21 C -0.16 -2.43 10.01 22.28 0.22 -2.21 16 22 C -0.07 -1.20 9.63 22.48 0.22 -0.98 16 23 C -0.21 -3.90 10.63 67.04 0.71 -3.19 16 24 S 0.18 4.46 22.81 -56.49 -1.29 3.17 16 25 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.01 0.64 7.20 -2.38 -0.02 0.62 16 27 H 0.06 2.24 7.57 -2.39 -0.02 2.22 16 28 H 0.13 4.33 8.14 -2.39 -0.02 4.32 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.16 1.07 6.66 -2.91 -0.02 1.05 16 31 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.15 2.55 7.70 -2.91 -0.02 2.53 16 34 H 0.22 2.05 6.89 -2.91 -0.02 2.03 16 Total: -1.00 -76.79 329.97 1.57 -75.23 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 1.09 Total: 3.34 kcal Atomic # 6 Polarization: -62.53 SS G_CDS: 4.09 Total: -58.44 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.59 Total: -70.66 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -2.61 Total: -36.43 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: 46.05 SS G_CDS: -2.07 Total: 43.98 kcal Total: -76.79 1.57 -75.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187062085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.810 kcal (2) G-P(sol) polarization free energy of solvation -76.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds