Wall clock time and date at job start Fri Apr 10 2020 18:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00280 * 2 1 4 4 S 1.65604 * 119.99690 * 179.97438 * 2 1 3 5 5 O 1.42087 * 106.40505 * 336.45979 * 4 2 1 6 6 O 1.42105 * 106.39847 * 203.53996 * 4 2 1 7 7 N 1.65598 * 107.21683 * 90.00607 * 4 2 1 8 8 C 1.36935 * 120.00437 * 89.99501 * 7 4 2 9 9 H 1.08004 * 119.99684 * 37.44556 * 8 7 4 10 10 C 1.38812 * 119.99993 * 217.71688 * 8 7 4 11 11 N 1.31616 * 119.99684 * 213.63165 * 10 8 7 12 12 Si 1.86793 * 120.00027 * 33.63174 * 10 8 7 13 13 H 1.48502 * 109.47002 * 95.11514 * 12 10 8 14 14 H 1.48504 * 109.47355 * 215.11233 * 12 10 8 15 15 H 1.48500 * 109.47240 * 335.11475 * 12 10 8 16 16 C 1.46510 * 119.99574 * 269.99440 * 7 4 2 17 17 C 1.50695 * 109.47082 * 262.01554 * 16 7 4 18 18 C 1.33566 * 126.01913 * 87.29309 * 17 16 7 19 19 N 1.31869 * 114.51283 * 179.97438 * 18 17 16 20 20 C 1.29137 * 117.07182 * 0.02562 * 19 18 17 21 21 Cl 1.73606 * 124.92045 * 180.02562 * 20 19 18 22 22 S 1.70972 * 110.16023 * 359.72201 * 20 19 18 23 23 H 1.08995 * 109.46902 * 270.00262 * 1 2 3 24 24 H 1.08994 * 109.46816 * 30.00119 * 1 2 3 25 25 H 1.09004 * 109.46816 * 150.00407 * 1 2 3 26 26 H 1.09007 * 109.47108 * 269.99918 * 3 2 1 27 27 H 1.09006 * 109.46996 * 29.99050 * 3 2 1 28 28 H 1.08992 * 109.47758 * 150.00059 * 3 2 1 29 29 H 0.97000 * 120.00233 * 179.97438 * 11 10 8 30 30 H 1.08997 * 109.46830 * 22.01471 * 16 7 4 31 31 H 1.09003 * 109.46847 * 142.01224 * 16 7 4 32 32 H 1.07998 * 122.74484 * 359.95707 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.4114 -2.4063 0.5455 6 8 3.5759 -1.1566 0.5450 7 7 2.5382 -1.8593 -1.5809 8 6 3.6665 -1.4422 -2.2351 9 1 4.6095 -1.3973 -1.7104 10 6 3.5973 -1.0717 -3.5711 11 7 4.6156 -1.3039 -4.3720 12 14 2.0590 -0.2435 -4.2321 13 1 2.2385 1.2303 -4.2022 14 1 1.8210 -0.6848 -5.6300 15 1 0.8946 -0.6176 -3.3899 16 6 1.5478 -2.6818 -2.2803 17 6 1.9910 -4.1221 -2.2664 18 6 1.7357 -5.0131 -1.3047 19 7 2.2337 -6.2141 -1.5254 20 6 2.8956 -6.3836 -2.6212 21 17 3.6352 -7.8746 -3.1149 22 16 2.9308 -4.9292 -3.5193 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 2.3793 1.5833 -1.0277 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1384 0.5138 29 1 4.5672 -1.0454 -5.3056 30 1 0.5836 -2.5935 -1.7798 31 1 1.4546 -2.3402 -3.3112 32 1 1.1682 -4.7699 -0.4186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283602360.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:15 Heat of formation + Delta-G solvation = -10.671886 kcal Electronic energy + Delta-G solvation = -22126.912700 eV Core-core repulsion = 18596.484469 eV Total energy + Delta-G solvation = -3530.428231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 325.011 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.29995 -36.75202 -36.28884 -36.11556 -35.42309 -34.79067 -32.44102 -30.32190 -27.64767 -26.41412 -24.60854 -23.97106 -23.46141 -19.88991 -18.57230 -18.31072 -17.48621 -16.77935 -16.55854 -15.73875 -15.40758 -15.15300 -14.47562 -14.13083 -13.91653 -13.70897 -13.55379 -13.00038 -12.94923 -12.54614 -12.38892 -12.22100 -11.79196 -11.57103 -11.39832 -11.31899 -11.19654 -11.00293 -10.91606 -10.83783 -10.78229 -10.53561 -10.16099 -9.50963 -9.17264 -8.88801 -8.50841 -8.42196 -8.30522 -6.80621 -4.21534 0.87730 1.16798 1.58643 2.09068 2.26040 2.90235 3.03074 3.07766 3.12300 3.75198 3.91795 4.38871 4.56948 5.04344 5.21982 5.26199 5.37391 5.45660 5.65100 5.73771 5.83082 5.98585 6.03076 6.15844 6.23599 6.42793 6.49701 6.68642 7.15788 7.34280 7.88464 8.15825 8.79338 8.84308 10.26360 Molecular weight = 325.01amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.006024 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.414379 B = 4646.977088 C = 5641.066482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -1.024 6.024 3 C 0.094 3.906 4 S 2.687 3.313 5 O -1.012 7.012 6 O -0.983 6.983 7 N -0.840 5.840 8 C -0.294 4.294 9 H 0.117 0.883 10 C 0.082 3.918 11 N -0.810 5.810 12 Si 0.841 3.159 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.252 1.252 16 C 0.201 3.799 17 C -0.205 4.205 18 C 0.043 3.957 19 N -0.465 5.465 20 C 0.037 3.963 21 Cl 0.005 6.995 22 S 0.241 5.759 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.280 0.720 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 -0.979 -1.255 7.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.860 5.860 3 C -0.053 4.053 4 S 2.711 3.289 5 O -0.996 6.996 6 O -0.967 6.967 7 N -0.669 5.669 8 C -0.436 4.436 9 H 0.135 0.865 10 C -0.134 4.134 11 N -0.443 5.443 12 Si 0.665 3.335 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.177 1.177 16 C 0.071 3.929 17 C -0.329 4.329 18 C -0.109 4.109 19 N -0.182 5.182 20 C -0.265 4.265 21 Cl 0.033 6.967 22 S 0.491 5.509 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.250 -1.750 -1.082 6.580 hybrid contribution -1.168 0.888 0.008 1.467 sum -7.418 -0.862 -1.074 7.544 Atomic orbital electron populations 1.21248 0.80628 1.01902 1.00722 1.58680 1.13965 1.23099 1.90279 1.21383 0.96809 0.85614 1.01455 1.07366 0.72791 0.72744 0.76034 1.93404 1.67035 1.60054 1.79078 1.93449 1.40427 1.84759 1.78071 1.53886 1.26934 1.53936 1.32149 1.18977 0.86365 1.43689 0.94550 0.86548 1.25606 0.96851 0.94775 0.96188 1.70006 1.32026 1.36736 1.05556 0.87516 0.85071 0.81865 0.79088 1.19655 1.20184 1.17657 1.19829 0.91174 0.82552 0.99310 1.26704 1.05251 1.02331 0.98622 1.21712 1.02560 0.85720 1.00954 1.65963 1.10512 1.23994 1.17762 1.27058 1.05634 0.95120 0.98669 1.98380 1.79401 1.30045 1.88887 1.84402 1.48039 0.97930 1.20529 0.93663 0.92251 0.91954 0.93210 0.92571 0.90471 0.90955 0.89177 0.90547 0.79341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.47 10.29 59.85 0.62 2.08 16 2 N -1.02 -18.29 3.64 -129.20 -0.47 -18.76 16 3 C 0.09 1.50 10.66 59.84 0.64 2.14 16 4 S 2.69 57.57 5.98 -107.50 -0.64 56.93 16 5 O -1.01 -21.91 15.45 -57.17 -0.88 -22.79 16 6 O -0.98 -24.22 15.67 -57.17 -0.90 -25.12 16 7 N -0.84 -18.07 2.49 -61.08 -0.15 -18.23 16 8 C -0.29 -6.98 9.35 -15.06 -0.14 -7.12 16 9 H 0.12 3.12 7.62 -52.48 -0.40 2.72 16 10 C 0.08 1.89 5.12 -17.43 -0.09 1.80 16 11 N -0.81 -19.52 13.97 55.49 0.78 -18.74 16 12 Si 0.84 16.90 26.29 -169.99 -4.47 12.43 16 13 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 14 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 15 H -0.25 -4.65 5.86 56.52 0.33 -4.32 16 16 C 0.20 3.82 4.58 -5.19 -0.02 3.80 16 17 C -0.20 -3.90 6.10 -35.95 -0.22 -4.12 16 18 C 0.04 0.81 11.23 -19.17 -0.22 0.60 16 19 N -0.46 -8.93 10.56 -12.81 -0.14 -9.06 16 20 C 0.04 0.65 8.03 51.63 0.41 1.07 16 21 Cl 0.01 0.08 29.33 -51.86 -1.52 -1.44 16 22 S 0.24 4.31 23.22 -107.50 -2.50 1.81 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 25 H 0.06 0.87 7.51 -51.93 -0.39 0.48 16 26 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.08 1.32 7.02 -51.93 -0.36 0.95 16 29 H 0.28 6.24 8.31 -40.82 -0.34 5.90 16 30 H 0.09 1.49 7.22 -51.93 -0.37 1.12 16 31 H 0.08 1.42 4.07 -51.93 -0.21 1.21 16 32 H 0.19 3.49 7.40 -52.49 -0.39 3.10 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -27.74 313.61 -8.20 -35.94 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.02 Total: 2.06 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 0.98 Total: 0.24 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: 0.02 Total: -64.79 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.78 Total: -47.91 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -4.47 Total: 12.43 kcal Atomic # 16 Polarization: 61.87 SS G_CDS: -3.14 Total: 58.74 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.52 Total: -1.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.74 -8.20 -35.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283602360.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.270 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds