Wall clock time and date at job start Fri Apr 10 2020 18:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00280 * 2 1 4 4 S 1.65604 * 119.99690 * 179.97438 * 2 1 3 5 5 O 1.42087 * 106.40505 * 336.45979 * 4 2 1 6 6 O 1.42105 * 106.39847 * 203.53996 * 4 2 1 7 7 N 1.65598 * 107.21683 * 90.00607 * 4 2 1 8 8 C 1.36935 * 120.00437 * 89.99501 * 7 4 2 9 9 H 1.08004 * 119.99684 * 37.44556 * 8 7 4 10 10 C 1.38812 * 119.99993 * 217.71688 * 8 7 4 11 11 N 1.31616 * 119.99684 * 213.63165 * 10 8 7 12 12 Si 1.86793 * 120.00027 * 33.63174 * 10 8 7 13 13 H 1.48502 * 109.47002 * 95.11514 * 12 10 8 14 14 H 1.48504 * 109.47355 * 215.11233 * 12 10 8 15 15 H 1.48500 * 109.47240 * 335.11475 * 12 10 8 16 16 C 1.46510 * 119.99574 * 269.99440 * 7 4 2 17 17 C 1.50695 * 109.47082 * 262.01554 * 16 7 4 18 18 C 1.33566 * 126.01913 * 87.29309 * 17 16 7 19 19 N 1.31869 * 114.51283 * 179.97438 * 18 17 16 20 20 C 1.29137 * 117.07182 * 0.02562 * 19 18 17 21 21 Cl 1.73606 * 124.92045 * 180.02562 * 20 19 18 22 22 S 1.70972 * 110.16023 * 359.72201 * 20 19 18 23 23 H 1.08995 * 109.46902 * 270.00262 * 1 2 3 24 24 H 1.08994 * 109.46816 * 30.00119 * 1 2 3 25 25 H 1.09004 * 109.46816 * 150.00407 * 1 2 3 26 26 H 1.09007 * 109.47108 * 269.99918 * 3 2 1 27 27 H 1.09006 * 109.46996 * 29.99050 * 3 2 1 28 28 H 1.08992 * 109.47758 * 150.00059 * 3 2 1 29 29 H 0.97000 * 120.00233 * 179.97438 * 11 10 8 30 30 H 1.08997 * 109.46830 * 22.01471 * 16 7 4 31 31 H 1.09003 * 109.46847 * 142.01224 * 16 7 4 32 32 H 1.07998 * 122.74484 * 359.95707 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.4114 -2.4063 0.5455 6 8 3.5759 -1.1566 0.5450 7 7 2.5382 -1.8593 -1.5809 8 6 3.6665 -1.4422 -2.2351 9 1 4.6095 -1.3973 -1.7104 10 6 3.5973 -1.0717 -3.5711 11 7 4.6156 -1.3039 -4.3720 12 14 2.0590 -0.2435 -4.2321 13 1 2.2385 1.2303 -4.2022 14 1 1.8210 -0.6848 -5.6300 15 1 0.8946 -0.6176 -3.3899 16 6 1.5478 -2.6818 -2.2803 17 6 1.9910 -4.1221 -2.2664 18 6 1.7357 -5.0131 -1.3047 19 7 2.2337 -6.2141 -1.5254 20 6 2.8956 -6.3836 -2.6212 21 17 3.6352 -7.8746 -3.1149 22 16 2.9308 -4.9292 -3.5193 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 2.3793 1.5833 -1.0277 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1384 0.5138 29 1 4.5672 -1.0454 -5.3056 30 1 0.5836 -2.5935 -1.7798 31 1 1.4546 -2.3402 -3.3112 32 1 1.1682 -4.7699 -0.4186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283602360.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:14 Heat of formation + Delta-G solvation = -30.529872 kcal Electronic energy + Delta-G solvation = -22127.773807 eV Core-core repulsion = 18596.484469 eV Total energy + Delta-G solvation = -3531.289338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 325.011 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75483 -38.18569 -38.02953 -37.67615 -36.81255 -36.59870 -34.13008 -31.86153 -28.86258 -27.92240 -26.25967 -25.34424 -24.98707 -21.36008 -20.23704 -19.81122 -19.10152 -18.36585 -18.20807 -17.35182 -16.87318 -16.66733 -15.92498 -15.49328 -15.31320 -15.25999 -15.03549 -14.64016 -14.60245 -14.01748 -13.85635 -13.41557 -13.22490 -13.03429 -12.96792 -12.83190 -12.75601 -12.62558 -12.50445 -12.38959 -12.27328 -12.11399 -11.65933 -11.08071 -10.71933 -10.34751 -10.09469 -9.88246 -9.78795 -8.52229 -6.01682 -0.58644 -0.23013 -0.05377 0.65186 0.86697 1.32063 1.45463 1.49102 1.63563 2.19297 2.28405 2.75302 2.85440 3.57375 3.62690 3.85873 4.01037 4.05483 4.32076 4.55877 4.59614 4.66673 4.83512 4.92280 4.99865 4.99969 5.11833 5.20453 5.61512 5.83747 6.30347 6.43118 7.02767 7.11685 8.59513 Molecular weight = 325.01amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.006024 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.414379 B = 4646.977088 C = 5641.066482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.025 6.025 3 C 0.088 3.912 4 S 2.722 3.278 5 O -1.012 7.012 6 O -1.021 7.021 7 N -0.851 5.851 8 C -0.316 4.316 9 H 0.067 0.933 10 C 0.056 3.944 11 N -0.855 5.855 12 Si 0.885 3.115 13 H -0.273 1.273 14 H -0.273 1.273 15 H -0.222 1.222 16 C 0.192 3.808 17 C -0.220 4.220 18 C 0.040 3.960 19 N -0.482 5.482 20 C 0.037 3.963 21 Cl 0.032 6.968 22 S 0.245 5.755 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.283 0.717 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 -0.392 -1.065 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.864 5.864 3 C -0.057 4.057 4 S 2.742 3.258 5 O -0.996 6.996 6 O -1.005 7.005 7 N -0.681 5.681 8 C -0.454 4.454 9 H 0.085 0.915 10 C -0.157 4.157 11 N -0.490 5.490 12 Si 0.706 3.294 13 H -0.199 1.199 14 H -0.198 1.198 15 H -0.145 1.145 16 C 0.063 3.937 17 C -0.344 4.344 18 C -0.112 4.112 19 N -0.200 5.200 20 C -0.264 4.264 21 Cl 0.060 6.940 22 S 0.495 5.505 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.813 -1.178 -0.952 8.942 hybrid contribution -0.397 0.645 0.113 0.766 sum -9.210 -0.533 -0.838 9.264 Atomic orbital electron populations 1.21613 0.77821 1.03793 1.02458 1.58194 1.15820 1.22374 1.90048 1.21541 0.96713 0.85524 1.01962 1.05195 0.72125 0.73271 0.75185 1.93416 1.66849 1.60469 1.78862 1.93420 1.42779 1.85561 1.78748 1.53624 1.27403 1.55561 1.31534 1.18343 0.85789 1.46300 0.95011 0.91539 1.25943 0.99403 0.94543 0.95789 1.70072 1.34443 1.38446 1.05991 0.86801 0.82992 0.80482 0.79098 1.19942 1.19841 1.14485 1.20111 0.91655 0.82081 0.99806 1.26777 1.05855 1.02656 0.99141 1.21803 1.02555 0.85821 1.01034 1.66017 1.11355 1.24231 1.18410 1.27309 1.04850 0.96103 0.98165 1.98388 1.78800 1.28299 1.88563 1.84385 1.47781 0.97950 1.20354 0.92083 0.89142 0.91421 0.93117 0.88442 0.92291 0.90681 0.86443 0.90028 0.78982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.14 10.29 127.77 1.31 3.46 16 2 N -1.03 -33.61 3.64 -562.69 -2.05 -35.66 16 3 C 0.09 2.60 10.66 127.77 1.36 3.96 16 4 S 2.72 113.57 5.98 -56.49 -0.34 113.23 16 5 O -1.01 -41.79 15.45 -128.00 -1.98 -43.77 16 6 O -1.02 -50.93 15.67 -128.00 -2.01 -52.93 16 7 N -0.85 -36.14 2.49 -347.16 -0.86 -37.00 16 8 C -0.32 -15.43 9.35 84.03 0.79 -14.65 16 9 H 0.07 3.82 7.62 -2.91 -0.02 3.80 16 10 C 0.06 2.60 5.12 84.86 0.43 3.04 16 11 N -0.86 -42.51 13.97 21.65 0.30 -42.21 16 12 Si 0.88 33.61 26.29 68.60 1.80 35.41 16 13 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 14 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 15 H -0.22 -7.26 5.86 99.48 0.58 -6.68 16 16 C 0.19 6.99 4.58 85.63 0.39 7.39 16 17 C -0.22 -8.20 6.10 24.62 0.15 -8.05 16 18 C 0.04 1.49 11.23 83.63 0.94 2.43 16 19 N -0.48 -18.13 10.56 -194.44 -2.05 -20.18 16 20 C 0.04 1.30 8.03 130.64 1.05 2.35 16 21 Cl 0.03 0.92 29.33 -2.72 -0.08 0.84 16 22 S 0.24 8.68 23.22 -56.49 -1.31 7.36 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.09 1.69 8.07 -2.39 -0.02 1.67 16 25 H 0.07 1.58 7.51 -2.38 -0.02 1.57 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.10 2.09 8.07 -2.38 -0.02 2.07 16 28 H 0.06 1.96 7.02 -2.39 -0.02 1.94 16 29 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 30 H 0.12 3.54 7.22 -2.39 -0.02 3.52 16 31 H 0.08 2.87 4.07 -2.39 -0.01 2.86 16 32 H 0.19 6.87 7.40 -2.91 -0.02 6.85 16 Total: -1.00 -60.55 313.61 -1.10 -61.65 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.04 Total: 13.33 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 6.43 Total: -0.08 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -4.66 Total: -135.05 kcal Atomic # 8 Polarization: -92.71 SS G_CDS: -3.98 Total: -96.70 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 1.80 Total: 35.41 kcal Atomic # 16 Polarization: 122.24 SS G_CDS: -1.65 Total: 120.59 kcal Atomic # 17 Polarization: 0.92 SS G_CDS: -0.08 Total: 0.84 kcal Total: -60.55 -1.10 -61.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283602360.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.121 kcal (2) G-P(sol) polarization free energy of solvation -60.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds