Wall clock time and date at job start Fri Apr 10 2020 18:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46816 * 2 1 4 4 C 1.50702 * 109.46992 * 119.99656 * 2 1 3 5 5 O 1.21272 * 120.00175 * 113.11273 * 4 2 1 6 6 N 1.34780 * 119.99794 * 293.10403 * 4 2 1 7 7 C 1.46499 * 119.99738 * 180.02562 * 6 4 2 8 8 C 1.53006 * 117.49931 * 223.62475 * 7 6 4 9 9 C 1.53002 * 117.49957 * 155.00257 * 7 6 4 10 10 N 1.46893 * 109.47362 * 239.99568 * 2 1 3 11 11 C 1.46899 * 110.99878 * 311.06832 * 10 2 1 12 12 C 1.53245 * 109.33913 * 187.25118 * 11 10 2 13 13 N 1.47071 * 108.51950 * 306.16794 * 12 11 10 14 14 C 1.34778 * 120.88019 * 231.18597 * 13 12 11 15 15 O 1.21585 * 120.00062 * 185.00380 * 14 13 12 16 16 N 1.34776 * 120.00063 * 4.99422 * 14 13 12 17 17 C 1.46501 * 119.99950 * 175.20421 * 16 14 13 18 18 C 1.50707 * 109.47098 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99733 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00090 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00189 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46678 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46853 * 120.00074 * 22 20 18 25 25 H 1.48495 * 109.47709 * 240.00210 * 22 20 18 26 26 C 1.47078 * 118.24114 * 51.45917 * 13 12 11 27 27 C 1.46902 * 111.00245 * 75.36400 * 10 2 1 28 28 H 1.08997 * 109.46655 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46991 * 300.00322 * 1 2 3 30 30 H 1.08998 * 109.47005 * 60.00233 * 1 2 3 31 31 H 0.96996 * 120.00336 * 0.02562 * 6 4 2 32 32 H 1.08997 * 115.55399 * 9.32982 * 7 6 4 33 33 H 1.09002 * 117.49437 * 0.02562 * 8 7 6 34 34 H 1.08993 * 117.50235 * 145.02167 * 8 7 6 35 35 H 1.08998 * 117.50308 * 214.97631 * 9 7 6 36 36 H 1.08996 * 117.49697 * 359.97438 * 9 7 6 37 37 H 1.09003 * 109.49729 * 67.29368 * 11 10 2 38 38 H 1.08997 * 109.49151 * 307.20861 * 11 10 2 39 39 H 1.09003 * 109.62622 * 186.45644 * 12 11 10 40 40 H 1.09006 * 109.62720 * 65.88070 * 12 11 10 41 41 H 0.96994 * 120.00101 * 355.20755 * 16 14 13 42 42 H 1.09001 * 109.47021 * 300.00308 * 17 16 14 43 43 H 1.08998 * 109.47480 * 60.00204 * 17 16 14 44 44 H 0.96995 * 119.99837 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.63052 * 68.24791 * 26 13 12 46 46 H 1.08994 * 109.63150 * 188.82835 * 26 13 12 47 47 H 1.09000 * 109.49204 * 292.71506 * 27 10 2 48 48 H 1.09009 * 109.48639 * 52.78759 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.6232 -1.7640 1.1237 6 7 1.8252 -0.1745 2.4497 7 6 2.3139 -0.8647 3.6459 8 6 1.3742 -0.9414 4.8509 9 6 2.5916 -0.0154 4.8878 10 7 2.0198 -0.6925 -1.1993 11 6 1.3458 -1.9863 -1.3722 12 6 2.0076 -2.7536 -2.5218 13 7 2.0161 -1.8927 -3.7142 14 6 1.5456 -2.3414 -4.8948 15 8 1.6432 -1.6503 -5.8904 16 7 0.9670 -3.5562 -4.9718 17 6 0.3619 -4.0009 -6.2297 18 6 -0.2116 -5.3830 -6.0503 19 1 -0.1328 -5.8805 -5.0949 20 6 -0.8369 -6.0123 -7.1057 21 7 -0.9333 -5.4062 -8.2689 22 14 -1.5471 -7.7256 -6.8835 23 1 -1.3099 -8.1829 -5.4907 24 1 -3.0073 -7.6948 -7.1521 25 1 -0.8892 -8.6610 -7.8308 26 6 2.5573 -0.5312 -3.5857 27 6 1.8686 0.1506 -2.3928 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.3524 0.6682 2.5352 32 1 2.9682 -1.7170 3.4626 33 1 0.3921 -0.4787 4.7534 34 1 1.4100 -1.8443 5.4605 35 1 3.4282 -0.3090 5.5217 36 1 2.4110 1.0570 4.8148 37 1 0.2937 -1.8204 -1.6037 38 1 1.4294 -2.5656 -0.4527 39 1 1.4414 -3.6616 -2.7298 40 1 3.0309 -3.0114 -2.2489 41 1 0.9512 -4.1361 -4.1944 42 1 -0.4335 -3.3119 -6.5138 43 1 1.1214 -4.0210 -7.0112 44 1 -1.3729 -5.8491 -9.0115 45 1 3.6325 -0.5793 -3.4130 46 1 2.3549 0.0309 -4.4973 47 1 0.8092 0.2868 -2.6100 48 1 2.3313 1.1212 -2.2133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332099772.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:33 Heat of formation + Delta-G solvation = -14.972125 kcal Electronic energy + Delta-G solvation = -27944.560131 eV Core-core repulsion = 24036.090481 eV Total energy + Delta-G solvation = -3908.469650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69767 -39.61892 -38.17775 -37.10647 -34.80976 -34.19834 -33.26644 -32.36134 -31.00124 -30.50913 -27.48194 -26.33190 -24.79165 -23.81065 -22.88226 -22.66102 -22.00395 -21.01633 -20.34015 -18.91455 -17.96006 -17.45210 -17.00052 -16.10625 -15.86994 -15.46908 -15.39689 -15.12453 -14.98461 -14.69850 -14.63941 -14.35777 -14.16962 -13.57196 -13.21159 -13.18608 -13.00722 -12.76690 -12.53924 -12.24890 -12.09793 -12.05448 -11.92102 -11.70213 -11.65606 -11.20366 -11.13641 -11.04940 -10.99255 -10.88217 -10.87343 -10.24928 -9.94533 -9.32820 -9.28281 -9.15457 -8.70142 -8.62104 -8.22993 -7.65778 -6.12050 -4.18204 2.29189 2.56023 3.22027 3.26401 3.33776 3.37461 3.44526 3.70473 3.98181 4.26380 4.30702 4.34585 4.46151 4.50475 4.57198 4.63981 4.72770 4.97708 5.07788 5.08256 5.12846 5.14606 5.24033 5.30916 5.32754 5.35790 5.43094 5.47888 5.52808 5.57293 5.70305 5.82181 5.92387 5.96830 6.11005 6.14970 6.66840 6.77043 6.90720 7.12298 7.22001 7.56789 7.60017 7.62079 7.91467 7.93422 8.06593 8.80571 8.95547 9.37264 9.52259 10.98263 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.002453 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.071675 B =11413.908349 C =12507.441588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.107 0.893 4 C 0.525 3.475 5 O -0.513 6.513 6 N -0.707 5.707 7 C 0.083 3.917 8 C -0.195 4.195 9 C -0.191 4.191 10 N -0.514 5.514 11 C 0.039 3.961 12 C 0.121 3.879 13 N -0.641 5.641 14 C 0.698 3.302 15 O -0.600 6.600 16 N -0.730 5.730 17 C 0.266 3.734 18 C -0.539 4.539 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.139 3.861 27 C 0.041 3.959 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.400 0.600 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.385 0.615 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.265 0.735 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 14.259 26.891 30.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.046 4.046 3 H 0.124 0.876 4 C 0.311 3.689 5 O -0.386 6.386 6 N -0.358 5.358 7 C -0.023 4.023 8 C -0.233 4.233 9 C -0.229 4.229 10 N -0.238 5.238 11 C -0.090 4.090 12 C -0.003 4.003 13 N -0.381 5.381 14 C 0.399 3.601 15 O -0.480 6.480 16 N -0.384 5.384 17 C 0.145 3.855 18 C -0.578 4.578 19 H 0.080 0.920 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.208 1.208 26 C 0.015 3.985 27 C -0.087 4.087 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.234 0.766 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.059 0.941 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.220 0.780 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.061 0.939 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.353 13.824 25.834 29.785 hybrid contribution -1.585 -0.537 0.546 1.760 sum 3.768 13.287 26.379 29.776 Atomic orbital electron populations 1.22424 0.94878 1.03712 1.03238 1.21611 0.94413 0.98687 0.89935 0.87555 1.20543 0.78894 0.85630 0.83858 1.90692 1.39737 1.22189 1.86018 1.45396 1.59505 1.25843 1.05093 1.21583 1.01238 0.99224 0.80297 1.23430 0.95443 1.02430 1.02039 1.23376 1.00428 0.98099 1.00993 1.61795 1.57018 1.03763 1.01232 1.22653 0.95674 0.90530 1.00103 1.21614 1.01526 0.93036 0.84144 1.47366 1.67227 1.14819 1.08688 1.16054 0.78594 0.82849 0.82593 1.90849 1.64237 1.58437 1.34463 1.45872 1.60158 1.15368 1.17002 1.18982 0.92769 0.94106 0.79655 1.21259 1.38048 1.00620 0.97863 0.91972 1.24947 0.95833 0.98392 0.94911 1.69994 1.42692 1.37841 1.01778 0.86365 0.78704 0.83588 0.78263 1.19648 1.20859 1.20803 1.21474 0.97238 0.82365 0.97436 1.22687 0.99851 0.96266 0.89929 0.91178 0.91649 0.90959 0.76609 0.84402 0.88536 0.87967 0.87866 0.88511 0.94116 0.88411 0.89842 0.90863 0.77974 0.95904 0.95657 0.92564 0.91486 0.88581 0.93914 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.33 37.16 0.31 -0.99 16 2 C 0.07 0.54 2.70 -68.86 -0.19 0.35 16 3 H 0.11 0.65 7.86 -51.93 -0.41 0.24 16 4 C 0.52 5.02 6.88 -10.98 -0.08 4.94 16 5 O -0.51 -6.97 14.05 5.56 0.08 -6.89 16 6 N -0.71 -4.64 5.55 -53.80 -0.30 -4.93 16 7 C 0.08 0.55 6.43 -67.93 -0.44 0.12 16 8 C -0.19 -0.98 10.46 -26.73 -0.28 -1.26 16 9 C -0.19 -0.87 10.46 -26.73 -0.28 -1.15 16 10 N -0.51 -5.68 4.27 -227.43 -0.97 -6.65 16 11 C 0.04 0.48 4.28 -3.70 -0.02 0.46 16 12 C 0.12 1.71 6.59 -3.60 -0.02 1.69 16 13 N -0.64 -10.80 3.00 -177.91 -0.53 -11.34 16 14 C 0.70 15.32 8.31 -86.92 -0.72 14.60 16 15 O -0.60 -15.52 15.82 5.29 0.08 -15.44 16 16 N -0.73 -16.53 5.46 -66.41 -0.36 -16.90 16 17 C 0.27 7.34 5.43 -5.19 -0.03 7.31 16 18 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 19 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 22 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.14 1.95 6.61 -3.37 -0.02 1.93 16 27 C 0.04 0.45 5.36 -3.46 -0.02 0.43 16 28 H 0.07 0.60 6.48 -51.93 -0.34 0.27 16 29 H 0.06 0.31 8.07 -51.93 -0.42 -0.10 16 30 H 0.07 0.54 7.07 -51.93 -0.37 0.17 16 31 H 0.40 1.52 8.76 -40.82 -0.36 1.17 16 32 H 0.14 1.17 7.40 -51.93 -0.38 0.78 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.04 0.51 6.68 -51.93 -0.35 0.17 16 38 H 0.10 1.25 6.04 -51.93 -0.31 0.94 16 39 H 0.08 1.17 5.63 -51.93 -0.29 0.88 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.39 7.66 5.82 -40.82 -0.24 7.42 16 42 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 1.48 7.09 -51.93 -0.37 1.11 16 47 H 0.04 0.49 7.14 -51.93 -0.37 0.12 16 48 H 0.08 0.70 7.93 -51.92 -0.41 0.29 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -35.66 381.90 -10.26 -45.92 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.53 Total: 5.28 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: -2.20 Total: 14.77 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -1.43 Total: -65.60 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.16 Total: -22.33 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.66 -10.26 -45.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332099772.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.948 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds