Wall clock time and date at job start Fri Apr 10 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46816 * 2 1 4 4 C 1.50702 * 109.46992 * 119.99656 * 2 1 3 5 5 O 1.21272 * 120.00175 * 113.11273 * 4 2 1 6 6 N 1.34780 * 119.99794 * 293.10403 * 4 2 1 7 7 C 1.46499 * 119.99738 * 180.02562 * 6 4 2 8 8 C 1.53006 * 117.49931 * 223.62475 * 7 6 4 9 9 C 1.53002 * 117.49957 * 155.00257 * 7 6 4 10 10 N 1.46893 * 109.47362 * 239.99568 * 2 1 3 11 11 C 1.46899 * 110.99878 * 311.06832 * 10 2 1 12 12 C 1.53245 * 109.33913 * 187.25118 * 11 10 2 13 13 N 1.47071 * 108.51950 * 306.16794 * 12 11 10 14 14 C 1.34778 * 120.88019 * 231.18597 * 13 12 11 15 15 O 1.21585 * 120.00062 * 185.00380 * 14 13 12 16 16 N 1.34776 * 120.00063 * 4.99422 * 14 13 12 17 17 C 1.46501 * 119.99950 * 175.20421 * 16 14 13 18 18 C 1.50707 * 109.47098 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99733 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00090 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00189 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46678 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46853 * 120.00074 * 22 20 18 25 25 H 1.48495 * 109.47709 * 240.00210 * 22 20 18 26 26 C 1.47078 * 118.24114 * 51.45917 * 13 12 11 27 27 C 1.46902 * 111.00245 * 75.36400 * 10 2 1 28 28 H 1.08997 * 109.46655 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46991 * 300.00322 * 1 2 3 30 30 H 1.08998 * 109.47005 * 60.00233 * 1 2 3 31 31 H 0.96996 * 120.00336 * 0.02562 * 6 4 2 32 32 H 1.08997 * 115.55399 * 9.32982 * 7 6 4 33 33 H 1.09002 * 117.49437 * 0.02562 * 8 7 6 34 34 H 1.08993 * 117.50235 * 145.02167 * 8 7 6 35 35 H 1.08998 * 117.50308 * 214.97631 * 9 7 6 36 36 H 1.08996 * 117.49697 * 359.97438 * 9 7 6 37 37 H 1.09003 * 109.49729 * 67.29368 * 11 10 2 38 38 H 1.08997 * 109.49151 * 307.20861 * 11 10 2 39 39 H 1.09003 * 109.62622 * 186.45644 * 12 11 10 40 40 H 1.09006 * 109.62720 * 65.88070 * 12 11 10 41 41 H 0.96994 * 120.00101 * 355.20755 * 16 14 13 42 42 H 1.09001 * 109.47021 * 300.00308 * 17 16 14 43 43 H 1.08998 * 109.47480 * 60.00204 * 17 16 14 44 44 H 0.96995 * 119.99837 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.63052 * 68.24791 * 26 13 12 46 46 H 1.08994 * 109.63150 * 188.82835 * 26 13 12 47 47 H 1.09000 * 109.49204 * 292.71506 * 27 10 2 48 48 H 1.09009 * 109.48639 * 52.78759 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.6232 -1.7640 1.1237 6 7 1.8252 -0.1745 2.4497 7 6 2.3139 -0.8647 3.6459 8 6 1.3742 -0.9414 4.8509 9 6 2.5916 -0.0154 4.8878 10 7 2.0198 -0.6925 -1.1993 11 6 1.3458 -1.9863 -1.3722 12 6 2.0076 -2.7536 -2.5218 13 7 2.0161 -1.8927 -3.7142 14 6 1.5456 -2.3414 -4.8948 15 8 1.6432 -1.6503 -5.8904 16 7 0.9670 -3.5562 -4.9718 17 6 0.3619 -4.0009 -6.2297 18 6 -0.2116 -5.3830 -6.0503 19 1 -0.1328 -5.8805 -5.0949 20 6 -0.8369 -6.0123 -7.1057 21 7 -0.9333 -5.4062 -8.2689 22 14 -1.5471 -7.7256 -6.8835 23 1 -1.3099 -8.1829 -5.4907 24 1 -3.0073 -7.6948 -7.1521 25 1 -0.8892 -8.6610 -7.8308 26 6 2.5573 -0.5312 -3.5857 27 6 1.8686 0.1506 -2.3928 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.3524 0.6682 2.5352 32 1 2.9682 -1.7170 3.4626 33 1 0.3921 -0.4787 4.7534 34 1 1.4100 -1.8443 5.4605 35 1 3.4282 -0.3090 5.5217 36 1 2.4110 1.0570 4.8148 37 1 0.2937 -1.8204 -1.6037 38 1 1.4294 -2.5656 -0.4527 39 1 1.4414 -3.6616 -2.7298 40 1 3.0309 -3.0114 -2.2489 41 1 0.9512 -4.1361 -4.1944 42 1 -0.4335 -3.3119 -6.5138 43 1 1.1214 -4.0210 -7.0112 44 1 -1.3729 -5.8491 -9.0115 45 1 3.6325 -0.5793 -3.4130 46 1 2.3549 0.0309 -4.4973 47 1 0.8092 0.2868 -2.6100 48 1 2.3313 1.1212 -2.2133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332099772.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:32 Heat of formation + Delta-G solvation = -42.794874 kcal Electronic energy + Delta-G solvation = -27945.766616 eV Core-core repulsion = 24036.090481 eV Total energy + Delta-G solvation = -3909.676135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65228 -40.90784 -39.18661 -37.84425 -36.24010 -36.00738 -34.40524 -33.91125 -32.16512 -31.42557 -29.32609 -27.53717 -25.67758 -25.03932 -24.39042 -23.24160 -22.86531 -22.02408 -21.28468 -20.53552 -19.36882 -18.19925 -18.08894 -17.56032 -17.34547 -16.74759 -16.56767 -16.32020 -16.12035 -15.71911 -15.62823 -15.31507 -15.21682 -14.92720 -14.75954 -14.49323 -14.03749 -13.80585 -13.64373 -13.45776 -13.25772 -13.18845 -12.88615 -12.84548 -12.75228 -12.49319 -12.36161 -12.23612 -12.16992 -12.09932 -11.99071 -11.45521 -11.42994 -11.14874 -10.82275 -10.73175 -10.08909 -9.69978 -9.54839 -9.20494 -8.29080 -6.45549 1.42455 1.44279 1.57319 1.60942 1.73299 1.98664 2.18502 2.37901 2.88339 3.02752 3.05562 3.12640 3.65509 3.79137 3.86029 3.99681 4.01414 4.06255 4.09424 4.11277 4.21445 4.23512 4.36768 4.53017 4.61183 4.71779 4.76726 4.79495 4.81465 4.85745 4.90813 5.01572 5.05219 5.05872 5.17226 5.23393 5.26116 5.45206 5.52337 5.57124 5.68820 5.83230 5.88668 5.95771 6.13425 6.58915 6.65667 7.14267 7.24330 7.30964 7.66652 8.83500 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.002453 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.071675 B =11413.908349 C =12507.441588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 H 0.138 0.862 4 C 0.522 3.478 5 O -0.562 6.562 6 N -0.690 5.690 7 C 0.056 3.944 8 C -0.188 4.188 9 C -0.173 4.173 10 N -0.524 5.524 11 C 0.051 3.949 12 C 0.118 3.882 13 N -0.630 5.630 14 C 0.694 3.306 15 O -0.645 6.645 16 N -0.726 5.726 17 C 0.286 3.714 18 C -0.554 4.554 19 H 0.080 0.920 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.986 3.014 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.278 1.278 26 C 0.131 3.869 27 C 0.053 3.947 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.416 0.584 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.038 0.962 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.400 0.600 42 H -0.013 1.013 43 H -0.015 1.015 44 H 0.269 0.731 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.038 0.962 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 14.821 30.055 33.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.043 4.043 3 H 0.155 0.845 4 C 0.309 3.691 5 O -0.439 6.439 6 N -0.342 5.342 7 C -0.050 4.050 8 C -0.226 4.226 9 C -0.211 4.211 10 N -0.249 5.249 11 C -0.077 4.077 12 C -0.005 4.005 13 N -0.368 5.368 14 C 0.395 3.605 15 O -0.528 6.528 16 N -0.381 5.381 17 C 0.163 3.837 18 C -0.592 4.592 19 H 0.099 0.901 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.809 3.191 23 H -0.178 1.178 24 H -0.202 1.202 25 H -0.204 1.204 26 C 0.008 3.992 27 C -0.076 4.076 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.253 0.747 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.238 0.762 42 H 0.005 0.995 43 H 0.003 0.997 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.057 0.943 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.813 14.443 29.117 32.857 hybrid contribution -1.339 -0.614 -0.345 1.513 sum 3.474 13.829 28.772 32.112 Atomic orbital electron populations 1.22378 0.93778 1.02937 1.04594 1.21717 0.95154 0.99482 0.87917 0.84495 1.20803 0.78312 0.85089 0.84919 1.90677 1.42197 1.24301 1.86720 1.45231 1.58614 1.26083 1.04263 1.21560 1.02621 0.99841 0.81009 1.23483 0.95947 1.02783 1.00404 1.23449 1.00235 0.98681 0.98776 1.61721 1.57388 1.03509 1.02260 1.22446 0.95252 0.91314 0.98723 1.21793 1.02126 0.92996 0.83604 1.47392 1.65613 1.16184 1.07620 1.16215 0.78502 0.82188 0.83546 1.90810 1.65931 1.59464 1.36628 1.45509 1.60356 1.16241 1.16010 1.18424 0.90610 0.94008 0.80697 1.21590 1.38174 1.00552 0.98862 0.90148 1.26066 0.95916 1.03305 0.94284 1.70150 1.43527 1.40155 1.02947 0.85089 0.77707 0.77247 0.79021 1.17808 1.20227 1.20367 1.21732 0.98213 0.80748 0.98495 1.22604 0.99470 0.97087 0.88401 0.93017 0.88878 0.91013 0.74717 0.86892 0.87557 0.87863 0.87365 0.86975 0.94410 0.88644 0.89960 0.90379 0.76216 0.99547 0.99694 0.92195 0.90401 0.90274 0.94339 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.33 71.98 0.60 -1.44 16 2 C 0.07 0.94 2.70 44.17 0.12 1.06 16 3 H 0.14 1.07 7.86 -2.39 -0.02 1.05 16 4 C 0.52 9.10 6.88 87.66 0.60 9.70 16 5 O -0.56 -15.05 14.05 -3.00 -0.04 -15.09 16 6 N -0.69 -7.50 5.55 -442.53 -2.46 -9.95 16 7 C 0.06 0.67 6.43 44.99 0.29 0.96 16 8 C -0.19 -1.48 10.46 30.60 0.32 -1.16 16 9 C -0.17 -1.15 10.46 30.60 0.32 -0.83 16 10 N -0.52 -10.60 4.27 -873.45 -3.73 -14.34 16 11 C 0.05 1.22 4.28 86.39 0.37 1.59 16 12 C 0.12 3.30 6.59 86.35 0.57 3.87 16 13 N -0.63 -21.40 3.00 -835.06 -2.51 -23.91 16 14 C 0.69 31.57 8.31 179.05 1.49 33.06 16 15 O -0.65 -35.03 15.82 -3.98 -0.06 -35.09 16 16 N -0.73 -34.00 5.46 -482.29 -2.64 -36.63 16 17 C 0.29 16.54 5.43 85.64 0.47 17.01 16 18 C -0.55 -31.26 9.28 25.60 0.24 -31.02 16 19 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 20 C 0.00 0.22 5.46 84.65 0.46 0.68 16 21 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 22 Si 0.99 43.31 29.54 68.60 2.03 45.34 16 23 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.13 3.62 6.61 86.50 0.57 4.19 16 27 C 0.05 1.03 5.36 86.54 0.46 1.49 16 28 H 0.05 0.81 6.48 -2.39 -0.02 0.79 16 29 H 0.09 0.55 8.07 -2.39 -0.02 0.53 16 30 H 0.07 0.87 7.07 -2.39 -0.02 0.85 16 31 H 0.42 1.74 8.76 -92.71 -0.81 0.93 16 32 H 0.11 1.95 7.40 -2.39 -0.02 1.94 16 33 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.04 0.92 6.68 -2.39 -0.02 0.91 16 38 H 0.10 2.40 6.04 -2.39 -0.01 2.39 16 39 H 0.08 2.29 5.63 -2.39 -0.01 2.28 16 40 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.40 16.11 5.82 -92.71 -0.54 15.57 16 42 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H -0.01 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 2.48 7.09 -2.39 -0.02 2.46 16 47 H 0.04 0.81 7.14 -2.39 -0.02 0.79 16 48 H 0.12 1.55 7.93 -2.38 -0.02 1.53 16 Total: -1.00 -81.43 381.90 -2.61 -84.04 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.36 Total: 23.29 kcal Atomic # 6 Polarization: 32.29 SS G_CDS: 6.88 Total: 39.16 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -11.05 Total: -141.65 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -0.11 Total: -50.19 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -81.43 -2.61 -84.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332099772.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.244 kcal (2) G-P(sol) polarization free energy of solvation -81.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds