Wall clock time and date at job start Fri Apr 10 2020 18:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.33191 * 2 1 4 4 C 1.54909 * 110.36331 * 122.23303 * 2 1 3 5 5 C 1.55156 * 101.58225 * 155.84541 * 4 2 1 6 6 H 1.09002 * 110.72014 * 83.03900 * 5 4 2 7 7 N 1.46900 * 110.72239 * 206.13529 * 5 4 2 8 8 C 1.48532 * 111.00275 * 178.24430 * 7 5 4 9 9 C 1.54945 * 103.22647 * 159.71984 * 8 7 5 10 10 C 1.54590 * 102.92090 * 322.58779 * 9 8 7 11 11 C 1.47904 * 111.00074 * 295.64037 * 7 5 4 12 12 C 1.54324 * 103.10409 * 324.58739 * 5 4 2 13 13 N 1.47315 * 107.11644 * 21.97425 * 12 5 4 14 14 C 1.34785 * 125.61383 * 181.11395 * 13 12 5 15 15 O 1.21581 * 119.99706 * 180.22094 * 14 13 12 16 16 N 1.34771 * 119.99869 * 0.22355 * 14 13 12 17 17 C 1.46503 * 119.99791 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47048 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99961 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99979 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00166 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99474 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99527 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00267 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47181 * 89.99929 * 25 23 21 27 27 H 1.48499 * 109.47294 * 209.99777 * 25 23 21 28 28 H 1.48500 * 109.47048 * 329.99809 * 25 23 21 29 29 H 1.08995 * 109.46958 * 297.77027 * 1 2 3 30 30 H 1.09001 * 109.46647 * 57.76518 * 1 2 3 31 31 H 1.08994 * 109.47389 * 177.76234 * 1 2 3 32 32 H 1.09006 * 111.00952 * 37.77656 * 4 2 1 33 33 H 1.08998 * 111.01033 * 273.91820 * 4 2 1 34 34 H 1.08995 * 110.67229 * 278.15748 * 8 7 5 35 35 H 1.09003 * 110.66763 * 41.28949 * 8 7 5 36 36 H 1.09003 * 110.71980 * 204.22784 * 9 8 7 37 37 H 1.08992 * 110.87623 * 81.02279 * 9 8 7 38 38 H 1.09001 * 110.30818 * 263.04121 * 10 9 8 39 39 H 1.08996 * 110.39137 * 140.91922 * 10 9 8 40 40 H 1.08998 * 109.91519 * 333.51314 * 11 7 5 41 41 H 1.09002 * 109.91200 * 94.60520 * 11 7 5 42 42 H 1.08998 * 109.88728 * 141.52375 * 12 5 4 43 43 H 1.09001 * 109.87824 * 262.68629 * 12 5 4 44 44 H 0.96996 * 120.00560 * 359.97438 * 16 14 13 45 45 H 1.08996 * 109.47304 * 299.99477 * 17 16 14 46 46 H 1.08996 * 109.47171 * 60.00046 * 17 16 14 47 47 H 0.96995 * 119.99615 * 0.02562 * 20 18 17 48 48 H 0.97006 * 119.99964 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0690 -0.7746 1.2285 5 6 3.4776 -1.1991 0.7355 6 1 4.1951 -0.3905 0.8756 7 7 3.9260 -2.4148 1.4276 8 6 5.2560 -2.8507 0.9303 9 6 5.7822 -3.7561 2.0722 10 6 5.2817 -3.0342 3.3443 11 6 4.0983 -2.1675 2.8756 12 6 3.2540 -1.4766 -0.7660 13 7 2.0431 -0.7398 -1.1674 14 6 1.4972 -0.7390 -2.3998 15 8 0.4942 -0.0881 -2.6199 16 7 2.0632 -1.4599 -3.3879 17 6 1.4702 -1.4586 -4.7275 18 6 2.2882 -2.3359 -5.6399 19 8 3.2697 -2.9065 -5.2129 20 7 1.9286 -2.4873 -6.9299 21 6 2.6725 -3.2858 -7.7597 22 1 3.5464 -3.7939 -7.3795 23 6 2.3013 -3.4423 -9.0895 24 7 3.0147 -4.2073 -9.8850 25 14 0.7885 -2.5654 -9.7465 26 1 1.1781 -1.2317 -10.2707 27 1 0.1855 -3.3699 -10.8393 28 1 -0.2006 -2.3973 -8.6517 29 1 -0.3633 0.4788 0.9093 30 1 -0.3633 0.5482 -0.8693 31 1 -0.3634 -1.0268 -0.0401 32 1 1.4510 -1.6466 1.4426 33 1 2.1398 -0.1242 2.1003 34 1 5.1538 -3.4183 0.0054 35 1 5.9128 -1.9928 0.7858 36 1 6.8712 -3.8015 2.0577 37 1 5.3549 -4.7564 2.0030 38 1 6.0704 -2.4056 3.7577 39 1 4.9488 -3.7596 4.0865 40 1 4.3179 -1.1140 3.0488 41 1 3.1919 -2.4506 3.4109 42 1 4.1122 -1.1265 -1.3396 43 1 3.1081 -2.5446 -0.9278 44 1 2.8636 -1.9789 -3.2124 45 1 0.4507 -1.8404 -4.6739 46 1 1.4571 -0.4411 -5.1181 47 1 1.1435 -2.0313 -7.2712 48 1 2.7554 -4.3169 -10.8133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377029578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:19 Heat of formation + Delta-G solvation = -47.892158 kcal Electronic energy + Delta-G solvation = -27938.025324 eV Core-core repulsion = 24028.128154 eV Total energy + Delta-G solvation = -3909.897170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59714 -39.30423 -38.43027 -37.08283 -34.52941 -33.78989 -32.72371 -31.85672 -31.60736 -29.28111 -28.92382 -27.52760 -25.82478 -24.35864 -22.86366 -21.81371 -21.17500 -20.46311 -19.69966 -19.45134 -18.61383 -17.64547 -17.11626 -16.28084 -16.01948 -15.59572 -15.42050 -15.11818 -14.72972 -14.44351 -14.18059 -14.13962 -13.93338 -13.61390 -13.26188 -13.11971 -13.03804 -12.70225 -12.47506 -12.34383 -12.21677 -12.13941 -11.94918 -11.91992 -11.68777 -11.46368 -11.25866 -11.21934 -11.16814 -10.93655 -10.89493 -10.62671 -10.04861 -9.73792 -9.68067 -8.94647 -8.79427 -8.74422 -8.46236 -8.28548 -6.39296 -3.91690 2.61255 3.01324 3.05923 3.13850 3.33805 3.53242 3.60331 4.02251 4.05146 4.10904 4.30359 4.42995 4.53684 4.59683 4.63798 4.82079 4.91981 4.95160 5.11240 5.15930 5.17864 5.26605 5.27353 5.43384 5.45698 5.48417 5.53873 5.54968 5.62952 5.65447 5.68619 5.73945 5.79304 5.82757 5.85268 5.88730 6.08136 6.16442 6.45940 6.50536 6.71146 6.73122 7.17063 7.46747 8.02171 8.15661 8.46325 8.77815 8.83458 9.31685 9.65689 10.72933 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002648 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.993592 B =10572.496636 C =12130.824313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.071 0.929 4 C -0.120 4.120 5 C 0.065 3.935 6 H 0.059 0.941 7 N -0.507 5.507 8 C 0.030 3.970 9 C -0.123 4.123 10 C -0.132 4.132 11 C 0.038 3.962 12 C 0.108 3.892 13 N -0.634 5.634 14 C 0.726 3.274 15 O -0.592 6.592 16 N -0.724 5.724 17 C 0.126 3.874 18 C 0.439 3.561 19 O -0.579 6.579 20 N -0.577 5.577 21 C -0.309 4.309 22 H 0.121 0.879 23 C 0.045 3.955 24 N -0.875 5.875 25 Si 0.879 3.121 26 H -0.269 1.269 27 H -0.275 1.275 28 H -0.266 1.266 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.407 0.593 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.374 0.626 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 6.960 25.808 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.052 3.948 3 H 0.089 0.911 4 C -0.159 4.159 5 C -0.044 4.044 6 H 0.077 0.923 7 N -0.232 5.232 8 C -0.098 4.098 9 C -0.161 4.161 10 C -0.170 4.170 11 C -0.090 4.090 12 C -0.016 4.016 13 N -0.373 5.373 14 C 0.428 3.572 15 O -0.471 6.471 16 N -0.381 5.381 17 C -0.003 4.003 18 C 0.225 3.775 19 O -0.463 6.463 20 N -0.215 5.215 21 C -0.438 4.438 22 H 0.139 0.861 23 C -0.159 4.159 24 N -0.514 5.514 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.192 1.192 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.245 0.755 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.208 0.792 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.173 6.551 25.477 26.307 hybrid contribution -0.055 0.954 -0.547 1.101 sum 0.119 7.505 24.930 26.036 Atomic orbital electron populations 1.22129 0.93632 1.03013 1.03046 1.21661 0.95453 0.94680 0.82979 0.91134 1.22949 0.95190 1.00785 0.96926 1.22787 0.96945 0.91288 0.93389 0.92289 1.64821 1.26150 1.29370 1.02856 1.23313 0.88985 0.98334 0.99160 1.22469 1.00441 0.99486 0.93752 1.22401 0.97360 0.99006 0.98236 1.22824 0.98881 0.98321 0.88957 1.21988 0.87738 0.97863 0.94010 1.47558 1.29248 1.51934 1.08588 1.15302 0.82555 0.80298 0.79032 1.90844 1.26454 1.48201 1.81587 1.44797 1.32658 1.51746 1.08920 1.20804 0.97036 1.00591 0.81820 1.19666 0.87894 0.86707 0.83208 1.90531 1.29169 1.51679 1.74951 1.42114 1.26576 1.43813 1.08974 1.19435 1.10112 1.23660 0.90560 0.86105 1.25063 0.98043 0.96997 0.95832 1.69619 1.38634 1.36790 1.06379 0.86671 0.82688 0.80381 0.79770 1.19409 1.20004 1.19179 0.92468 0.89365 0.92561 0.89314 0.90180 0.89352 0.93490 0.90984 0.90533 0.91599 0.90962 0.93751 0.90216 0.91516 0.90187 0.75510 0.89878 0.89904 0.79233 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.59 37.16 0.32 -1.50 16 2 C 0.16 1.68 3.77 -66.42 -0.25 1.43 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -1.00 5.50 -24.58 -0.14 -1.14 16 5 C 0.07 0.57 2.29 -65.88 -0.15 0.42 16 6 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 7 N -0.51 -4.35 5.07 -220.31 -1.12 -5.46 16 8 C 0.03 0.24 5.96 -1.89 -0.01 0.23 16 9 C -0.12 -0.84 7.06 -24.87 -0.18 -1.01 16 10 C -0.13 -0.80 6.93 -25.38 -0.18 -0.97 16 11 C 0.04 0.26 6.07 -2.76 -0.02 0.24 16 12 C 0.11 1.19 5.20 -2.90 -0.02 1.18 16 13 N -0.63 -8.37 3.25 -168.49 -0.55 -8.92 16 14 C 0.73 12.06 8.27 -86.92 -0.72 11.35 16 15 O -0.59 -11.18 14.06 5.29 0.07 -11.10 16 16 N -0.72 -12.38 5.49 -66.41 -0.36 -12.75 16 17 C 0.13 2.27 6.15 -5.19 -0.03 2.24 16 18 C 0.44 9.82 7.85 -10.98 -0.09 9.74 16 19 O -0.58 -14.79 15.24 5.55 0.08 -14.70 16 20 N -0.58 -13.57 5.09 -10.96 -0.06 -13.63 16 21 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 24 N -0.88 -25.11 13.96 55.50 0.77 -24.33 16 25 Si 0.88 19.16 27.74 -169.99 -4.71 14.45 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.25 6.09 -51.93 -0.32 0.93 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.05 0.36 8.00 -51.93 -0.42 -0.05 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 0.28 7.73 -51.93 -0.40 -0.12 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 44 H 0.41 6.97 6.42 -40.82 -0.26 6.71 16 45 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 46 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 47 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 48 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -32.38 379.57 -9.77 -42.15 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -7.93 Total: 14.00 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -1.70 Total: 14.58 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.31 Total: -65.09 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.16 Total: -25.80 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.38 -9.77 -42.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377029578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.741 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds