Wall clock time and date at job start Fri Apr 10 2020 18:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.33191 * 2 1 4 4 C 1.54909 * 110.36331 * 122.23303 * 2 1 3 5 5 C 1.55156 * 101.58225 * 155.84541 * 4 2 1 6 6 H 1.09002 * 110.72014 * 83.03900 * 5 4 2 7 7 N 1.46900 * 110.72239 * 206.13529 * 5 4 2 8 8 C 1.48532 * 111.00275 * 178.24430 * 7 5 4 9 9 C 1.54945 * 103.22647 * 159.71984 * 8 7 5 10 10 C 1.54590 * 102.92090 * 322.58779 * 9 8 7 11 11 C 1.47904 * 111.00074 * 295.64037 * 7 5 4 12 12 C 1.54324 * 103.10409 * 324.58739 * 5 4 2 13 13 N 1.47315 * 107.11644 * 21.97425 * 12 5 4 14 14 C 1.34785 * 125.61383 * 181.11395 * 13 12 5 15 15 O 1.21581 * 119.99706 * 180.22094 * 14 13 12 16 16 N 1.34771 * 119.99869 * 0.22355 * 14 13 12 17 17 C 1.46503 * 119.99791 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47048 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99961 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99979 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00166 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99474 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99527 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00267 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47181 * 89.99929 * 25 23 21 27 27 H 1.48499 * 109.47294 * 209.99777 * 25 23 21 28 28 H 1.48500 * 109.47048 * 329.99809 * 25 23 21 29 29 H 1.08995 * 109.46958 * 297.77027 * 1 2 3 30 30 H 1.09001 * 109.46647 * 57.76518 * 1 2 3 31 31 H 1.08994 * 109.47389 * 177.76234 * 1 2 3 32 32 H 1.09006 * 111.00952 * 37.77656 * 4 2 1 33 33 H 1.08998 * 111.01033 * 273.91820 * 4 2 1 34 34 H 1.08995 * 110.67229 * 278.15748 * 8 7 5 35 35 H 1.09003 * 110.66763 * 41.28949 * 8 7 5 36 36 H 1.09003 * 110.71980 * 204.22784 * 9 8 7 37 37 H 1.08992 * 110.87623 * 81.02279 * 9 8 7 38 38 H 1.09001 * 110.30818 * 263.04121 * 10 9 8 39 39 H 1.08996 * 110.39137 * 140.91922 * 10 9 8 40 40 H 1.08998 * 109.91519 * 333.51314 * 11 7 5 41 41 H 1.09002 * 109.91200 * 94.60520 * 11 7 5 42 42 H 1.08998 * 109.88728 * 141.52375 * 12 5 4 43 43 H 1.09001 * 109.87824 * 262.68629 * 12 5 4 44 44 H 0.96996 * 120.00560 * 359.97438 * 16 14 13 45 45 H 1.08996 * 109.47304 * 299.99477 * 17 16 14 46 46 H 1.08996 * 109.47171 * 60.00046 * 17 16 14 47 47 H 0.96995 * 119.99615 * 0.02562 * 20 18 17 48 48 H 0.97006 * 119.99964 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0690 -0.7746 1.2285 5 6 3.4776 -1.1991 0.7355 6 1 4.1951 -0.3905 0.8756 7 7 3.9260 -2.4148 1.4276 8 6 5.2560 -2.8507 0.9303 9 6 5.7822 -3.7561 2.0722 10 6 5.2817 -3.0342 3.3443 11 6 4.0983 -2.1675 2.8756 12 6 3.2540 -1.4766 -0.7660 13 7 2.0431 -0.7398 -1.1674 14 6 1.4972 -0.7390 -2.3998 15 8 0.4942 -0.0881 -2.6199 16 7 2.0632 -1.4599 -3.3879 17 6 1.4702 -1.4586 -4.7275 18 6 2.2882 -2.3359 -5.6399 19 8 3.2697 -2.9065 -5.2129 20 7 1.9286 -2.4873 -6.9299 21 6 2.6725 -3.2858 -7.7597 22 1 3.5464 -3.7939 -7.3795 23 6 2.3013 -3.4423 -9.0895 24 7 3.0147 -4.2073 -9.8850 25 14 0.7885 -2.5654 -9.7465 26 1 1.1781 -1.2317 -10.2707 27 1 0.1855 -3.3699 -10.8393 28 1 -0.2006 -2.3973 -8.6517 29 1 -0.3633 0.4788 0.9093 30 1 -0.3633 0.5482 -0.8693 31 1 -0.3634 -1.0268 -0.0401 32 1 1.4510 -1.6466 1.4426 33 1 2.1398 -0.1242 2.1003 34 1 5.1538 -3.4183 0.0054 35 1 5.9128 -1.9928 0.7858 36 1 6.8712 -3.8015 2.0577 37 1 5.3549 -4.7564 2.0030 38 1 6.0704 -2.4056 3.7577 39 1 4.9488 -3.7596 4.0865 40 1 4.3179 -1.1140 3.0488 41 1 3.1919 -2.4506 3.4109 42 1 4.1122 -1.1265 -1.3396 43 1 3.1081 -2.5446 -0.9278 44 1 2.8636 -1.9789 -3.2124 45 1 0.4507 -1.8404 -4.6739 46 1 1.4571 -0.4411 -5.1181 47 1 1.1435 -2.0313 -7.2712 48 1 2.7554 -4.3169 -10.8133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377029578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:18 Heat of formation + Delta-G solvation = -72.504422 kcal Electronic energy + Delta-G solvation = -27939.092592 eV Core-core repulsion = 24028.128154 eV Total energy + Delta-G solvation = -3910.964438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66501 -40.52251 -39.85127 -38.06459 -36.30297 -35.41257 -33.85605 -33.47664 -32.67896 -29.90431 -29.73018 -29.00957 -26.73017 -26.17851 -23.74693 -22.66080 -21.83153 -21.47935 -21.09906 -20.84268 -20.36002 -18.91916 -18.00875 -17.48679 -16.99650 -16.90332 -16.81323 -16.61624 -16.16990 -15.70370 -15.26185 -15.11301 -14.91074 -14.83059 -14.57624 -14.31934 -14.05546 -14.00865 -13.81461 -13.61579 -13.37440 -13.08387 -13.00438 -12.93205 -12.74140 -12.45382 -12.19579 -12.05705 -12.00688 -11.97441 -11.92241 -11.73773 -11.58963 -11.39739 -10.97662 -10.66731 -10.35358 -10.26821 -9.56895 -9.40434 -8.46196 -6.08147 1.30838 1.33604 1.42492 1.47011 1.77451 2.08076 2.20051 2.61562 2.88745 3.10029 3.13116 3.33908 3.61206 3.75602 3.96756 3.98562 4.05078 4.10873 4.16137 4.35767 4.36369 4.38292 4.41566 4.42654 4.60759 4.61600 4.68240 4.73697 4.78570 4.85757 4.95917 4.98749 5.01124 5.11083 5.17111 5.22480 5.25821 5.31709 5.34530 5.49261 5.55832 5.87015 5.89955 6.01176 6.08241 6.48153 6.77033 6.87966 7.27099 7.49092 7.77068 8.70253 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002648 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.993592 B =10572.496636 C =12130.824313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.148 3.852 3 H 0.082 0.918 4 C -0.106 4.106 5 C 0.074 3.926 6 H 0.072 0.928 7 N -0.521 5.521 8 C 0.027 3.973 9 C -0.123 4.123 10 C -0.128 4.128 11 C 0.037 3.963 12 C 0.106 3.894 13 N -0.632 5.632 14 C 0.722 3.278 15 O -0.616 6.616 16 N -0.729 5.729 17 C 0.139 3.861 18 C 0.446 3.554 19 O -0.615 6.615 20 N -0.577 5.577 21 C -0.331 4.331 22 H 0.063 0.937 23 C -0.008 4.008 24 N -0.925 5.925 25 Si 0.959 3.041 26 H -0.256 1.256 27 H -0.273 1.273 28 H -0.233 1.233 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.406 0.594 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.392 0.608 48 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 8.988 27.789 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.100 0.900 4 C -0.144 4.144 5 C -0.036 4.036 6 H 0.090 0.910 7 N -0.246 5.246 8 C -0.101 4.101 9 C -0.161 4.161 10 C -0.167 4.167 11 C -0.090 4.090 12 C -0.017 4.017 13 N -0.370 5.370 14 C 0.424 3.576 15 O -0.497 6.497 16 N -0.386 5.386 17 C 0.010 3.990 18 C 0.233 3.767 19 O -0.500 6.500 20 N -0.217 5.217 21 C -0.460 4.460 22 H 0.081 0.919 23 C -0.208 4.208 24 N -0.565 5.565 25 Si 0.779 3.221 26 H -0.180 1.180 27 H -0.197 1.197 28 H -0.157 1.157 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.243 0.757 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.228 0.772 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.351 8.587 27.516 28.857 hybrid contribution 0.537 0.261 -1.069 1.224 sum -0.815 8.849 26.447 27.900 Atomic orbital electron populations 1.22033 0.94039 1.01868 1.03176 1.21950 0.95205 0.95411 0.82910 0.90029 1.22886 0.94242 1.00630 0.96635 1.22718 0.97610 0.91789 0.91460 0.91033 1.64794 1.26466 1.29381 1.03993 1.23308 0.89120 0.98605 0.99048 1.22465 1.00972 0.98871 0.93806 1.22403 0.97383 0.99095 0.97770 1.22885 0.99384 0.99150 0.87606 1.22070 0.86817 0.96736 0.96096 1.47669 1.29570 1.51701 1.08098 1.15411 0.82401 0.80013 0.79769 1.90832 1.27463 1.49158 1.82262 1.44810 1.32736 1.52193 1.08901 1.20700 0.96587 1.00365 0.81317 1.20483 0.87276 0.85749 0.83181 1.90519 1.30916 1.52922 1.75691 1.41910 1.26979 1.43831 1.08984 1.19024 1.09789 1.25215 0.91973 0.91866 1.26064 1.01934 0.97420 0.95362 1.69779 1.41097 1.38541 1.07093 0.85447 0.77982 0.79011 0.79710 1.18020 1.19748 1.15661 0.89530 0.92228 0.93998 0.90093 0.87163 0.90970 0.93038 0.90077 0.91376 0.90501 0.90385 0.92659 0.89889 0.91598 0.91657 0.75715 0.88141 0.87901 0.77206 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.59 71.98 0.62 -2.64 16 2 C 0.15 2.90 3.77 45.47 0.17 3.07 16 3 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.11 -1.47 5.50 31.99 0.18 -1.30 16 5 C 0.07 1.15 2.29 46.10 0.11 1.25 16 6 H 0.07 0.97 8.06 -2.39 -0.02 0.96 16 7 N -0.52 -8.15 5.07 -850.94 -4.31 -12.47 16 8 C 0.03 0.41 5.96 86.65 0.52 0.93 16 9 C -0.12 -1.54 7.06 31.80 0.22 -1.31 16 10 C -0.13 -1.27 6.93 31.47 0.22 -1.05 16 11 C 0.04 0.42 6.07 86.44 0.52 0.94 16 12 C 0.11 2.30 5.20 86.67 0.45 2.75 16 13 N -0.63 -16.17 3.25 -805.24 -2.62 -18.78 16 14 C 0.72 23.56 8.27 179.05 1.48 25.04 16 15 O -0.62 -22.78 14.06 -3.97 -0.06 -22.83 16 16 N -0.73 -24.71 5.49 -482.30 -2.65 -27.36 16 17 C 0.14 4.83 6.15 85.63 0.53 5.35 16 18 C 0.45 20.03 7.85 87.66 0.69 20.72 16 19 O -0.61 -32.47 15.24 -3.07 -0.05 -32.52 16 20 N -0.58 -27.07 5.09 -306.98 -1.56 -28.63 16 21 C -0.33 -19.01 10.16 84.04 0.85 -18.16 16 22 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 23 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 24 N -0.93 -54.71 13.96 21.66 0.30 -54.41 16 25 Si 0.96 38.53 27.74 68.60 1.90 40.43 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 27 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 28 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.64 6.09 -2.39 -0.01 1.62 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.31 8.06 -2.38 -0.02 1.29 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 35 H 0.05 0.74 8.00 -2.39 -0.02 0.72 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.51 7.73 -2.39 -0.02 0.49 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.61 8.03 -2.39 -0.02 1.59 16 44 H 0.41 14.11 6.42 -92.71 -0.60 13.52 16 45 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 47 H 0.39 15.47 5.76 -92.71 -0.53 14.94 16 48 H 0.28 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -73.89 379.57 -2.23 -76.13 By element: Atomic # 1 Polarization: 45.02 SS G_CDS: -0.22 Total: 44.80 kcal Atomic # 6 Polarization: 28.61 SS G_CDS: 7.02 Total: 35.64 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -10.84 Total: -141.65 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.10 Total: -55.35 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.90 Total: 40.43 kcal Total: -73.89 -2.23 -76.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377029578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.622 kcal (2) G-P(sol) polarization free energy of solvation -73.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds