Wall clock time and date at job start Fri Apr 10 2020 18:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46856 * 110.99738 * 2 1 4 4 C 1.53013 * 109.63532 * 185.83361 * 3 2 1 5 5 C 1.53154 * 109.35109 * 301.12532 * 4 3 2 6 6 C 1.53062 * 109.06224 * 57.40381 * 5 4 3 7 7 H 1.09003 * 109.46323 * 61.73905 * 6 5 4 8 8 C 1.53034 * 109.63746 * 181.83102 * 6 5 4 9 9 N 1.46910 * 109.02411 * 65.55913 * 8 6 5 10 10 C 1.34778 * 120.68855 * 233.55623 * 9 8 6 11 11 O 1.21596 * 119.99448 * 354.96083 * 10 9 8 12 12 N 1.34772 * 120.00623 * 174.95771 * 10 9 8 13 13 C 1.46496 * 120.00746 * 185.06775 * 12 10 9 14 14 C 1.50695 * 109.47537 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99715 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99937 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99735 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00126 * 359.97438 * 17 16 14 19 19 C 1.38957 * 119.99726 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99833 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47182 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46913 * 120.00201 * 21 19 17 24 24 H 1.48491 * 109.47415 * 240.00403 * 21 19 17 25 25 C 1.47153 * 118.48990 * 53.44572 * 9 8 6 26 26 C 1.53152 * 108.78066 * 306.22002 * 25 9 8 27 27 C 1.47033 * 111.00294 * 123.93872 * 2 1 3 28 28 H 1.08999 * 109.57154 * 53.70668 * 27 2 1 29 29 H 1.08995 * 109.47194 * 63.95327 * 1 2 3 30 30 H 1.09007 * 109.46935 * 183.95183 * 1 2 3 31 31 H 1.08994 * 109.46978 * 303.94930 * 1 2 3 32 32 H 1.08998 * 109.44185 * 65.78183 * 3 2 1 33 33 H 1.09001 * 109.44546 * 305.88439 * 3 2 1 34 34 H 1.08998 * 109.49275 * 181.16287 * 4 3 2 35 35 H 1.08997 * 109.51365 * 61.09926 * 4 3 2 36 36 H 1.09003 * 109.54299 * 297.52992 * 5 4 3 37 37 H 1.09004 * 109.53698 * 177.27830 * 5 4 3 38 38 H 1.09002 * 109.56482 * 185.45277 * 8 6 5 39 39 H 1.09001 * 109.56013 * 305.67211 * 8 6 5 40 40 H 0.97009 * 119.99608 * 5.07389 * 12 10 9 41 41 H 1.09003 * 109.47056 * 300.00707 * 13 12 10 42 42 H 1.09008 * 109.46494 * 59.99964 * 13 12 10 43 43 H 0.97001 * 120.00339 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99324 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.56117 * 186.43471 * 25 9 8 46 46 H 1.09007 * 109.70334 * 66.08706 * 25 9 8 47 47 H 1.09000 * 109.48072 * 294.95196 * 26 25 9 48 48 H 1.09009 * 109.48362 * 174.91438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5180 1.3374 -0.1465 5 6 4.1215 0.5349 1.0100 6 6 3.5180 -0.8718 1.0109 7 1 3.7700 -1.3757 0.0777 8 6 4.0782 -1.6711 2.1895 9 7 3.6193 -1.0596 3.4440 10 6 4.5012 -0.7069 4.4002 11 8 5.6797 -0.9766 4.2696 12 7 4.0771 -0.0554 5.5011 13 6 5.0477 0.4259 6.4872 14 6 4.3206 1.1140 7.6135 15 8 3.1104 1.1941 7.5947 16 7 5.0149 1.6405 8.6417 17 6 4.3533 2.2660 9.6667 18 1 3.2758 2.3373 9.6500 19 6 5.0691 2.8083 10.7271 20 7 6.3803 2.7220 10.7471 21 14 4.1678 3.6613 12.1232 22 1 2.7060 3.6250 11.8640 23 1 4.4609 2.9636 13.4010 24 1 4.6196 5.0728 12.2150 25 6 2.1764 -0.8393 3.6308 26 6 1.6413 -0.0399 2.4391 27 6 1.9961 -0.7664 1.1388 28 1 1.5594 -1.7651 1.1402 29 1 -0.3633 0.4512 -0.9232 30 1 -0.3633 -1.0253 0.0708 31 1 -0.3633 0.5739 0.8524 32 1 1.7317 1.8608 0.9374 33 1 1.5629 1.9257 -0.8328 34 1 3.9080 2.3549 -0.1255 35 1 3.7824 0.8660 -1.0931 36 1 3.8945 1.0294 1.9545 37 1 5.2020 0.4679 0.8825 38 1 3.7236 -2.7003 2.1340 39 1 5.1676 -1.6581 2.1543 40 1 3.1289 0.0948 5.6406 41 1 5.6133 -0.4180 6.8822 42 1 5.7304 1.1299 6.0112 43 1 5.9827 1.5761 8.6570 44 1 6.8799 3.1009 11.4872 45 1 2.0088 -0.2798 4.5512 46 1 1.6624 -1.7989 3.6877 47 1 2.0917 0.9527 2.4356 48 1 0.5582 0.0524 2.5201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377046638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:32 Heat of formation + Delta-G solvation = -54.292583 kcal Electronic energy + Delta-G solvation = -28638.078341 eV Core-core repulsion = 24727.903628 eV Total energy + Delta-G solvation = -3910.174713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05235 -39.43121 -38.17928 -36.03199 -34.56561 -34.01965 -33.53022 -31.66513 -31.34148 -30.77635 -27.73743 -26.83881 -25.55948 -24.27493 -23.79279 -22.67838 -21.80868 -20.04856 -19.66955 -18.65865 -18.06576 -17.72943 -16.38138 -16.18134 -15.81597 -15.61172 -15.36152 -15.05374 -14.63794 -14.55000 -14.34323 -14.23367 -13.88286 -13.75208 -13.52434 -13.25433 -13.08141 -12.83840 -12.73229 -12.35851 -12.25811 -12.07262 -11.89441 -11.64419 -11.57048 -11.44076 -11.15213 -11.08936 -10.69140 -10.64107 -10.41849 -10.33297 -10.29840 -9.92580 -9.65470 -8.92107 -8.63366 -8.54685 -8.41148 -8.10602 -6.52160 -3.94113 2.71895 3.09434 3.21693 3.28271 3.35999 3.63112 3.74616 3.97850 4.14139 4.39022 4.46566 4.61744 4.73773 4.84165 4.84903 4.89965 4.99476 5.05456 5.14630 5.16707 5.21005 5.28396 5.35017 5.48355 5.49945 5.54406 5.58954 5.63622 5.63677 5.71995 5.79178 5.83598 5.90908 5.93725 6.01224 6.06788 6.08207 6.25550 6.51866 6.76401 6.78487 6.79304 7.06035 7.45490 7.92045 8.16620 8.44569 8.78995 9.04074 9.39066 9.86807 10.64843 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.002567 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.781842 B =10903.047835 C =11384.220834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.050 3.950 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.092 4.092 7 H 0.089 0.911 8 C 0.135 3.865 9 N -0.629 5.629 10 C 0.709 3.291 11 O -0.595 6.595 12 N -0.726 5.726 13 C 0.127 3.873 14 C 0.429 3.571 15 O -0.599 6.599 16 N -0.549 5.549 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.894 5.894 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.115 3.885 26 C -0.171 4.171 27 C 0.092 3.908 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.405 0.595 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.396 0.604 44 H 0.274 0.726 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -6.060 -21.247 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.078 4.078 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.112 4.112 7 H 0.107 0.893 8 C 0.012 3.988 9 N -0.367 5.367 10 C 0.411 3.589 11 O -0.474 6.474 12 N -0.385 5.385 13 C -0.001 4.001 14 C 0.215 3.785 15 O -0.486 6.486 16 N -0.184 5.184 17 C -0.434 4.434 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.534 5.534 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.009 4.009 26 C -0.211 4.211 27 C -0.017 4.017 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.245 0.755 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.230 0.770 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.607 -6.318 -21.614 23.769 hybrid contribution -0.611 0.956 1.625 1.982 sum -8.218 -5.362 -19.989 22.268 Atomic orbital electron populations 1.22377 0.87507 1.01916 1.00834 1.62288 1.07470 1.13989 1.42045 1.22140 0.95820 0.89262 1.00600 1.21570 0.94210 1.00223 0.99308 1.21624 0.99969 0.94998 0.98738 1.21541 0.93939 0.97018 0.98719 0.89299 1.21425 1.01349 0.95028 0.81045 1.47202 1.05799 1.66102 1.17594 1.15733 0.84638 0.78565 0.79985 1.90892 1.15443 1.61317 1.79765 1.44970 1.11518 1.60494 1.21560 1.20787 0.91003 0.99203 0.89111 1.19764 0.88163 0.85515 0.85066 1.90482 1.13965 1.64338 1.79816 1.41795 1.09657 1.48616 1.18324 1.19771 0.93861 1.31806 0.97928 0.87659 1.25330 0.95582 0.97725 0.99119 1.69627 1.05594 1.45230 1.32998 0.85760 0.79600 0.78653 0.80090 1.19151 1.20604 1.20613 1.21571 0.80846 1.00042 0.98431 1.22662 1.01312 1.01129 0.96004 1.21753 0.95176 0.97216 0.87564 0.89754 0.91498 0.91415 0.95294 0.94273 0.91052 0.91598 0.91250 0.91638 0.91610 0.91785 0.88527 0.75465 0.89957 0.90147 0.77005 0.91635 0.89828 0.91245 0.90410 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.16 60.07 0.55 0.70 16 2 N -0.54 -4.49 4.87 -234.68 -1.14 -5.63 16 3 C 0.05 0.42 5.15 -3.84 -0.02 0.40 16 4 C -0.12 -1.00 6.09 -26.64 -0.16 -1.16 16 5 C -0.12 -1.17 4.90 -26.62 -0.13 -1.30 16 6 C -0.09 -0.84 2.60 -90.52 -0.24 -1.08 16 7 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 8 C 0.14 1.45 5.80 -3.80 -0.02 1.42 16 9 N -0.63 -7.96 2.43 -178.44 -0.43 -8.39 16 10 C 0.71 11.81 8.30 -86.92 -0.72 11.09 16 11 O -0.60 -11.70 15.79 5.28 0.08 -11.62 16 12 N -0.73 -12.56 5.44 -66.41 -0.36 -12.92 16 13 C 0.13 2.41 6.16 -5.20 -0.03 2.38 16 14 C 0.43 9.89 7.85 -10.99 -0.09 9.81 16 15 O -0.60 -15.31 15.24 5.55 0.08 -15.22 16 16 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 17 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 18 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 19 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 20 N -0.89 -23.91 13.05 55.50 0.72 -23.19 16 21 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 25 C 0.12 1.20 6.44 -3.61 -0.02 1.18 16 26 C -0.17 -1.57 4.30 -26.59 -0.11 -1.68 16 27 C 0.09 0.78 2.24 -67.53 -0.15 0.63 16 28 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.43 8.03 -51.92 -0.42 0.01 16 31 H 0.03 0.20 6.84 -51.93 -0.36 -0.15 16 32 H 0.04 0.36 6.13 -51.93 -0.32 0.04 16 33 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.80 6.05 -51.93 -0.31 0.48 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.19 7.04 -51.93 -0.37 0.83 16 40 H 0.41 6.88 4.91 -40.82 -0.20 6.68 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 43 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.08 0.97 5.59 -51.93 -0.29 0.67 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.83 4.69 -51.93 -0.24 0.59 16 48 H 0.07 0.61 6.70 -51.92 -0.35 0.26 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -31.09 365.92 -9.33 -40.42 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.33 Total: 14.72 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -1.39 Total: 14.54 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -1.27 Total: -63.84 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: 0.17 Total: -26.84 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.09 -9.33 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377046638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.874 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds