Wall clock time and date at job start Fri Apr 10 2020 18:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46840 * 111.00490 * 2 1 4 4 C 1.53032 * 109.50503 * 185.89660 * 3 2 1 5 5 C 1.53110 * 109.25904 * 300.76901 * 4 3 2 6 6 C 1.53109 * 109.19031 * 57.68381 * 5 4 3 7 7 H 1.08997 * 109.57552 * 62.48586 * 6 5 4 8 8 C 1.53699 * 109.17665 * 183.04215 * 6 5 4 9 9 N 1.46919 * 108.51496 * 174.41230 * 8 6 5 10 10 C 1.34775 * 120.63440 * 126.31693 * 9 8 6 11 11 O 1.21586 * 120.00246 * 174.68054 * 10 9 8 12 12 N 1.34775 * 119.99842 * 354.95668 * 10 9 8 13 13 C 1.46495 * 120.00330 * 184.79404 * 12 10 9 14 14 C 1.50699 * 109.47422 * 179.97438 * 13 12 10 15 15 O 1.21296 * 120.00199 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99941 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99766 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99982 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99808 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00142 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99862 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47375 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46970 * 119.99895 * 21 19 17 24 24 H 1.48494 * 109.47342 * 240.00185 * 21 19 17 25 25 C 1.46925 * 118.73566 * 306.04297 * 9 8 6 26 26 C 1.53195 * 108.77509 * 53.85777 * 25 9 8 27 27 C 1.46840 * 110.99895 * 124.25809 * 2 1 3 28 28 H 1.08999 * 109.47486 * 294.22881 * 27 2 1 29 29 H 1.09003 * 109.46917 * 295.74443 * 1 2 3 30 30 H 1.09008 * 109.47115 * 55.73869 * 1 2 3 31 31 H 1.08997 * 109.47616 * 175.74052 * 1 2 3 32 32 H 1.09001 * 109.46070 * 305.90651 * 3 2 1 33 33 H 1.09000 * 109.46804 * 65.88335 * 3 2 1 34 34 H 1.09005 * 109.50638 * 60.70588 * 4 3 2 35 35 H 1.09008 * 109.50884 * 180.83440 * 4 3 2 36 36 H 1.08997 * 109.52127 * 177.60131 * 5 4 3 37 37 H 1.09005 * 109.51425 * 297.71109 * 5 4 3 38 38 H 1.09003 * 109.75048 * 54.68412 * 8 6 5 39 39 H 1.08998 * 109.67609 * 294.09511 * 8 6 5 40 40 H 0.97005 * 120.00046 * 4.79419 * 12 10 9 41 41 H 1.09003 * 109.47337 * 300.00183 * 13 12 10 42 42 H 1.09001 * 109.47605 * 59.99959 * 13 12 10 43 43 H 0.96999 * 120.00572 * 0.02562 * 16 14 13 44 44 H 0.96996 * 119.99880 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.59164 * 173.64339 * 25 9 8 46 46 H 1.09007 * 109.59057 * 294.07265 * 25 9 8 47 47 H 1.08998 * 109.49794 * 65.29374 * 26 25 9 48 48 H 1.08996 * 109.49788 * 185.39583 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5180 1.3335 -0.1482 5 6 4.1190 0.5367 1.0129 6 6 3.5186 -0.8717 1.0208 7 1 3.7837 -1.3869 0.0976 8 6 4.0644 -1.6464 2.2310 9 7 3.3796 -2.9443 2.3015 10 6 4.0854 -4.0913 2.3531 11 8 3.5115 -5.1518 2.5086 12 7 5.4279 -4.0621 2.2379 13 6 6.1863 -5.3145 2.1884 14 6 7.6558 -5.0072 2.0583 15 8 8.0327 -3.8552 2.0120 16 7 8.5514 -6.0123 1.9945 17 6 9.8884 -5.7327 1.8756 18 1 10.2239 -4.7069 1.8335 19 6 10.8117 -6.7689 1.8092 20 7 10.4034 -8.0170 1.8599 21 14 12.6333 -6.3879 1.6480 22 1 12.8301 -4.9164 1.6133 23 1 13.3627 -6.9571 2.8095 24 1 13.1552 -6.9873 0.3936 25 6 1.9106 -2.9678 2.3209 26 6 1.3889 -2.1772 1.1168 27 6 1.9951 -0.7717 1.1330 28 1 1.7316 -0.2732 2.0659 29 1 -0.3633 0.4464 0.9257 30 1 -0.3634 0.5786 -0.8494 31 1 -0.3634 -1.0248 -0.0763 32 1 1.5628 1.9259 -0.8324 33 1 1.7335 1.8605 0.9380 34 1 3.7802 0.8554 -1.0920 35 1 3.9102 2.3505 -0.1333 36 1 5.1999 0.4712 0.8887 37 1 3.8903 1.0364 1.9543 38 1 3.8750 -1.0831 3.1448 39 1 5.1362 -1.8048 2.1123 40 1 5.8920 -3.2118 2.1878 41 1 6.0127 -5.8808 3.1035 42 1 5.8611 -5.9026 1.3302 43 1 8.2501 -6.9336 2.0319 44 1 11.0480 -8.7403 1.8132 45 1 1.5607 -3.9983 2.2606 46 1 1.5499 -2.5105 3.2423 47 1 1.6745 -2.6860 0.1961 48 1 0.3027 -2.1055 1.1716 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377046639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:35 Heat of formation + Delta-G solvation = -58.310514 kcal Electronic energy + Delta-G solvation = -28271.506634 eV Core-core repulsion = 24361.157691 eV Total energy + Delta-G solvation = -3910.348944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75508 -39.37564 -38.17735 -36.15439 -34.64671 -34.23641 -33.64178 -31.93842 -31.34281 -30.44262 -27.58741 -26.93369 -25.57076 -24.55793 -23.70719 -22.07384 -21.36647 -20.07488 -19.64964 -19.42498 -18.31582 -17.79737 -16.33619 -15.87927 -15.79420 -15.56853 -15.45204 -14.97010 -14.75242 -14.61645 -14.37766 -14.16271 -14.07613 -13.90083 -13.50975 -13.19539 -12.95962 -12.88656 -12.65350 -12.23783 -12.15278 -12.01445 -11.87808 -11.66897 -11.62213 -11.45394 -11.20228 -11.13059 -10.95153 -10.60857 -10.40061 -10.31631 -10.29059 -9.89054 -9.63407 -8.91057 -8.62218 -8.60891 -8.42100 -8.08516 -6.50140 -3.92023 2.72271 3.11107 3.23224 3.29862 3.34785 3.58002 3.76835 3.98767 4.15910 4.33483 4.44730 4.56814 4.71124 4.85768 4.88784 4.95254 5.00135 5.05667 5.09989 5.17105 5.18739 5.20220 5.37104 5.40586 5.42169 5.47490 5.51931 5.56892 5.62431 5.70739 5.74522 5.88101 5.92855 5.96201 6.00631 6.03654 6.10330 6.20916 6.49724 6.77406 6.78286 6.80968 7.06363 7.47477 7.94165 8.17972 8.46724 8.79953 9.06135 9.41243 9.89009 10.66904 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.002528 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.117702 B =11072.240702 C =12119.308931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.093 4.093 7 H 0.087 0.913 8 C 0.115 3.885 9 N -0.631 5.631 10 C 0.709 3.291 11 O -0.596 6.596 12 N -0.725 5.725 13 C 0.127 3.873 14 C 0.430 3.570 15 O -0.598 6.598 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.133 3.867 26 C -0.131 4.131 27 C 0.094 3.906 28 H 0.041 0.959 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.406 0.594 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.273 0.727 45 H 0.097 0.903 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.786 16.189 -1.799 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.113 4.113 7 H 0.106 0.894 8 C -0.009 4.009 9 N -0.369 5.369 10 C 0.411 3.589 11 O -0.475 6.475 12 N -0.384 5.384 13 C -0.001 4.001 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.184 5.184 17 C -0.433 4.433 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.009 3.991 26 C -0.170 4.170 27 C -0.014 4.014 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.246 0.754 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.230 0.770 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.642 15.737 -2.167 24.492 hybrid contribution 0.684 0.383 0.633 1.007 sum -17.958 16.120 -1.534 24.181 Atomic orbital electron populations 1.22419 0.87438 1.02543 1.00251 1.61878 1.07450 1.13474 1.43554 1.22093 0.95854 0.88960 1.00241 1.21569 0.94152 1.00187 0.99511 1.21610 1.00731 0.94620 0.98644 1.21677 0.93971 0.96187 0.99428 0.89434 1.21820 0.97428 0.83880 0.97745 1.47179 1.06333 1.04646 1.78695 1.15743 0.81683 0.83625 0.77885 1.90886 1.69901 1.28884 1.57839 1.44967 1.04585 1.10586 1.78311 1.20794 0.90485 0.85806 1.03057 1.19764 0.86895 0.86377 0.85426 1.90483 1.80134 1.20405 1.57499 1.41798 1.06487 1.07887 1.62275 1.19773 0.80872 0.95079 1.47579 0.87645 1.25326 1.00922 0.94639 0.96897 1.69622 1.35850 0.98648 1.49364 0.85762 0.81618 0.78883 0.77844 1.19148 1.20635 1.20622 1.21402 0.78430 1.02250 0.96983 1.22123 1.00180 0.94858 0.99843 1.21597 0.94551 0.93824 0.91451 0.94072 0.95818 0.91516 0.90786 0.90844 0.95082 0.90879 0.91354 0.90885 0.92020 0.91378 0.89425 0.75402 0.89952 0.90092 0.77010 0.91654 0.88488 0.92079 0.90405 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.05 60.06 0.54 0.69 16 2 N -0.54 -4.66 4.74 -234.86 -1.11 -5.78 16 3 C 0.06 0.43 5.46 -3.84 -0.02 0.41 16 4 C -0.12 -0.90 6.09 -26.66 -0.16 -1.06 16 5 C -0.12 -0.98 5.27 -26.62 -0.14 -1.12 16 6 C -0.09 -0.91 2.34 -90.15 -0.21 -1.12 16 7 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 8 C 0.12 1.25 5.73 -3.45 -0.02 1.23 16 9 N -0.63 -8.28 2.97 -178.19 -0.53 -8.81 16 10 C 0.71 12.08 8.30 -86.92 -0.72 11.36 16 11 O -0.60 -11.93 15.79 5.29 0.08 -11.84 16 12 N -0.72 -12.71 5.44 -66.42 -0.36 -13.07 16 13 C 0.13 2.42 6.16 -5.20 -0.03 2.39 16 14 C 0.43 9.94 7.85 -10.98 -0.09 9.85 16 15 O -0.60 -15.31 15.24 5.54 0.08 -15.22 16 16 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 17 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 18 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 19 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 20 N -0.89 -23.99 13.05 55.50 0.72 -23.27 16 21 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.13 1.45 6.41 -3.71 -0.02 1.43 16 26 C -0.13 -1.21 4.98 -26.59 -0.13 -1.34 16 27 C 0.09 0.84 1.68 -67.66 -0.11 0.73 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.41 8.09 -51.92 -0.42 -0.01 16 31 H 0.07 0.50 6.18 -51.93 -0.32 0.18 16 32 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.03 5.56 -51.93 -0.29 0.74 16 40 H 0.41 6.94 4.89 -40.82 -0.20 6.74 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.10 1.20 7.04 -51.93 -0.37 0.84 16 46 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.57 6.24 -51.93 -0.32 0.25 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -31.50 373.20 -9.60 -41.09 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -7.67 Total: 13.89 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -1.36 Total: 15.60 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -1.34 Total: -64.69 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: 0.17 Total: -27.06 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.50 -9.60 -41.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377046639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.216 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds