Wall clock time and date at job start Fri Apr 10 2020 18:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46840 * 111.00490 * 2 1 4 4 C 1.53032 * 109.50503 * 185.89660 * 3 2 1 5 5 C 1.53110 * 109.25904 * 300.76901 * 4 3 2 6 6 C 1.53109 * 109.19031 * 57.68381 * 5 4 3 7 7 H 1.08997 * 109.57552 * 62.48586 * 6 5 4 8 8 C 1.53699 * 109.17665 * 183.04215 * 6 5 4 9 9 N 1.46919 * 108.51496 * 174.41230 * 8 6 5 10 10 C 1.34775 * 120.63440 * 126.31693 * 9 8 6 11 11 O 1.21586 * 120.00246 * 174.68054 * 10 9 8 12 12 N 1.34775 * 119.99842 * 354.95668 * 10 9 8 13 13 C 1.46495 * 120.00330 * 184.79404 * 12 10 9 14 14 C 1.50699 * 109.47422 * 179.97438 * 13 12 10 15 15 O 1.21296 * 120.00199 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99941 * 179.97438 * 14 13 12 17 17 C 1.37105 * 119.99766 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99982 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99808 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00142 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99862 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47375 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46970 * 119.99895 * 21 19 17 24 24 H 1.48494 * 109.47342 * 240.00185 * 21 19 17 25 25 C 1.46925 * 118.73566 * 306.04297 * 9 8 6 26 26 C 1.53195 * 108.77509 * 53.85777 * 25 9 8 27 27 C 1.46840 * 110.99895 * 124.25809 * 2 1 3 28 28 H 1.08999 * 109.47486 * 294.22881 * 27 2 1 29 29 H 1.09003 * 109.46917 * 295.74443 * 1 2 3 30 30 H 1.09008 * 109.47115 * 55.73869 * 1 2 3 31 31 H 1.08997 * 109.47616 * 175.74052 * 1 2 3 32 32 H 1.09001 * 109.46070 * 305.90651 * 3 2 1 33 33 H 1.09000 * 109.46804 * 65.88335 * 3 2 1 34 34 H 1.09005 * 109.50638 * 60.70588 * 4 3 2 35 35 H 1.09008 * 109.50884 * 180.83440 * 4 3 2 36 36 H 1.08997 * 109.52127 * 177.60131 * 5 4 3 37 37 H 1.09005 * 109.51425 * 297.71109 * 5 4 3 38 38 H 1.09003 * 109.75048 * 54.68412 * 8 6 5 39 39 H 1.08998 * 109.67609 * 294.09511 * 8 6 5 40 40 H 0.97005 * 120.00046 * 4.79419 * 12 10 9 41 41 H 1.09003 * 109.47337 * 300.00183 * 13 12 10 42 42 H 1.09001 * 109.47605 * 59.99959 * 13 12 10 43 43 H 0.96999 * 120.00572 * 0.02562 * 16 14 13 44 44 H 0.96996 * 119.99880 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.59164 * 173.64339 * 25 9 8 46 46 H 1.09007 * 109.59057 * 294.07265 * 25 9 8 47 47 H 1.08998 * 109.49794 * 65.29374 * 26 25 9 48 48 H 1.08996 * 109.49788 * 185.39583 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5180 1.3335 -0.1482 5 6 4.1190 0.5367 1.0129 6 6 3.5186 -0.8717 1.0208 7 1 3.7837 -1.3869 0.0976 8 6 4.0644 -1.6464 2.2310 9 7 3.3796 -2.9443 2.3015 10 6 4.0854 -4.0913 2.3531 11 8 3.5115 -5.1518 2.5086 12 7 5.4279 -4.0621 2.2379 13 6 6.1863 -5.3145 2.1884 14 6 7.6558 -5.0072 2.0583 15 8 8.0327 -3.8552 2.0120 16 7 8.5514 -6.0123 1.9945 17 6 9.8884 -5.7327 1.8756 18 1 10.2239 -4.7069 1.8335 19 6 10.8117 -6.7689 1.8092 20 7 10.4034 -8.0170 1.8599 21 14 12.6333 -6.3879 1.6480 22 1 12.8301 -4.9164 1.6133 23 1 13.3627 -6.9571 2.8095 24 1 13.1552 -6.9873 0.3936 25 6 1.9106 -2.9678 2.3209 26 6 1.3889 -2.1772 1.1168 27 6 1.9951 -0.7717 1.1330 28 1 1.7316 -0.2732 2.0659 29 1 -0.3633 0.4464 0.9257 30 1 -0.3634 0.5786 -0.8494 31 1 -0.3634 -1.0248 -0.0763 32 1 1.5628 1.9259 -0.8324 33 1 1.7335 1.8605 0.9380 34 1 3.7802 0.8554 -1.0920 35 1 3.9102 2.3505 -0.1333 36 1 5.1999 0.4712 0.8887 37 1 3.8903 1.0364 1.9543 38 1 3.8750 -1.0831 3.1448 39 1 5.1362 -1.8048 2.1123 40 1 5.8920 -3.2118 2.1878 41 1 6.0127 -5.8808 3.1035 42 1 5.8611 -5.9026 1.3302 43 1 8.2501 -6.9336 2.0319 44 1 11.0480 -8.7403 1.8132 45 1 1.5607 -3.9983 2.2606 46 1 1.5499 -2.5105 3.2423 47 1 1.6745 -2.6860 0.1961 48 1 0.3027 -2.1055 1.1716 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377046639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:34 Heat of formation + Delta-G solvation = -80.929643 kcal Electronic energy + Delta-G solvation = -28272.487473 eV Core-core repulsion = 24361.157691 eV Total energy + Delta-G solvation = -3911.329783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79870 -40.56025 -39.87269 -37.15959 -36.28275 -35.49895 -34.90822 -33.39462 -32.82776 -31.26656 -29.15657 -27.53723 -26.75758 -26.08303 -24.65053 -22.84403 -22.28662 -21.37104 -20.77887 -20.70662 -20.08570 -19.25181 -17.61558 -17.29654 -16.99202 -16.71521 -16.41210 -16.28318 -16.02080 -15.95394 -15.63198 -15.30109 -15.15516 -15.01931 -14.82661 -14.18135 -14.10002 -13.70653 -13.68828 -13.54854 -13.46917 -13.26605 -12.93211 -12.89920 -12.77153 -12.44251 -12.39240 -12.23274 -12.10596 -11.92832 -11.64284 -11.57799 -11.48144 -11.19273 -10.95783 -10.55754 -10.31774 -10.09364 -9.54767 -9.22831 -8.50803 -6.00945 1.35339 1.42445 1.50738 1.58812 1.89011 2.05805 2.28065 2.78991 2.91840 3.14091 3.16428 3.58964 3.68844 3.81084 4.05301 4.15374 4.16891 4.20970 4.23328 4.33295 4.40104 4.43628 4.44894 4.51474 4.59761 4.61244 4.67610 4.73623 4.76613 4.81676 4.84820 4.95734 5.03912 5.10328 5.16412 5.24934 5.29017 5.30548 5.39211 5.47090 5.51237 5.85626 5.92556 6.17066 6.19316 6.47979 6.86363 7.03649 7.40737 7.48567 7.94192 8.66461 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.002528 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.117702 B =11072.240702 C =12119.308931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.555 5.555 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.088 4.088 7 H 0.062 0.938 8 C 0.114 3.886 9 N -0.624 5.624 10 C 0.706 3.294 11 O -0.629 6.629 12 N -0.726 5.726 13 C 0.140 3.860 14 C 0.435 3.565 15 O -0.623 6.623 16 N -0.559 5.559 17 C -0.335 4.335 18 H 0.087 0.913 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.271 1.271 25 C 0.130 3.870 26 C -0.122 4.122 27 C 0.099 3.901 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.408 0.592 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.553 17.658 -1.546 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.280 5.280 3 C -0.070 4.070 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.107 4.107 7 H 0.081 0.919 8 C -0.009 4.009 9 N -0.361 5.361 10 C 0.407 3.593 11 O -0.511 6.511 12 N -0.386 5.386 13 C 0.011 3.989 14 C 0.222 3.778 15 O -0.511 6.511 16 N -0.195 5.195 17 C -0.464 4.464 18 H 0.105 0.895 19 C -0.212 4.212 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.196 1.196 25 C 0.007 3.993 26 C -0.160 4.160 27 C -0.009 4.009 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.249 0.751 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.075 0.925 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.446 17.236 -1.919 26.056 hybrid contribution 0.845 -0.025 0.539 1.003 sum -18.601 17.211 -1.381 25.380 Atomic orbital electron populations 1.22453 0.86322 1.02865 1.00991 1.61863 1.08574 1.14125 1.43393 1.22120 0.95473 0.88508 1.00948 1.21561 0.94577 1.00705 0.98405 1.21598 1.00332 0.93786 0.99643 1.21583 0.94995 0.96606 0.97561 0.91934 1.21975 0.96625 0.82990 0.99318 1.47289 1.07238 1.04295 1.77260 1.15870 0.81338 0.84287 0.77775 1.90859 1.70349 1.30420 1.59447 1.44914 1.04946 1.10027 1.78750 1.20599 0.87653 0.86732 1.03872 1.20370 0.88277 0.85619 0.83567 1.90460 1.81101 1.21435 1.58137 1.41841 1.06268 1.08339 1.63007 1.19773 0.82271 0.94660 1.49729 0.89530 1.26143 1.04893 0.94295 0.95890 1.69688 1.37389 0.99300 1.49294 0.84804 0.76352 0.78498 0.78281 1.19366 1.19641 1.19644 1.21587 0.76906 1.01909 0.98859 1.22034 1.01446 0.94598 0.97930 1.21509 0.93614 0.93697 0.92122 0.93151 0.95047 0.90777 0.90707 0.89991 0.94388 0.92318 0.89848 0.91476 0.90703 0.89191 0.90665 0.75148 0.89054 0.89173 0.76705 0.91075 0.90160 0.89798 0.92461 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.05 127.69 1.16 1.40 16 2 N -0.55 -8.54 4.74 -896.97 -4.25 -12.79 16 3 C 0.06 0.74 5.46 86.33 0.47 1.21 16 4 C -0.11 -1.59 6.09 30.64 0.19 -1.40 16 5 C -0.12 -1.77 5.27 30.67 0.16 -1.60 16 6 C -0.09 -1.63 2.34 -10.49 -0.02 -1.66 16 7 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 8 C 0.11 2.37 5.73 86.53 0.50 2.86 16 9 N -0.62 -16.01 2.97 -835.93 -2.48 -18.49 16 10 C 0.71 24.05 8.30 179.06 1.49 25.53 16 11 O -0.63 -25.29 15.79 -3.99 -0.06 -25.35 16 12 N -0.73 -25.61 5.44 -482.31 -2.62 -28.24 16 13 C 0.14 5.37 6.16 85.63 0.53 5.90 16 14 C 0.43 20.42 7.85 87.66 0.69 21.11 16 15 O -0.62 -32.44 15.24 -3.08 -0.05 -32.49 16 16 N -0.56 -28.41 5.29 -306.97 -1.62 -30.03 16 17 C -0.34 -18.55 9.68 84.04 0.81 -17.73 16 18 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -49.02 13.05 21.66 0.28 -48.73 16 21 Si 1.00 41.89 29.55 68.60 2.03 43.92 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 C 0.13 2.69 6.41 86.36 0.55 3.24 16 26 C -0.12 -2.07 4.98 30.68 0.15 -1.92 16 27 C 0.10 1.59 1.68 44.98 0.08 1.67 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.75 8.09 -2.38 -0.02 0.73 16 31 H 0.07 0.84 6.18 -2.39 -0.01 0.82 16 32 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.77 5.56 -2.39 -0.01 1.75 16 40 H 0.41 14.11 4.89 -92.70 -0.45 13.66 16 41 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.40 19.53 7.90 -92.71 -0.73 18.79 16 44 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.08 1.96 7.04 -2.39 -0.02 1.95 16 46 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 1.26 6.24 -2.39 -0.01 1.24 16 Total: -1.00 -67.46 373.20 -1.78 -69.23 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: -0.21 Total: 44.52 kcal Atomic # 6 Polarization: 31.25 SS G_CDS: 7.21 Total: 38.46 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -10.70 Total: -138.28 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -0.11 Total: -57.84 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -67.46 -1.78 -69.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377046639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.697 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds