Wall clock time and date at job start Fri Apr 10 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48533 * 111.00272 * 2 1 4 4 C 1.54932 * 103.23044 * 159.72033 * 3 2 1 5 5 C 1.54600 * 102.92108 * 322.58315 * 4 3 2 6 6 C 1.47900 * 110.99913 * 117.39080 * 2 1 3 7 7 H 1.09004 * 110.08465 * 333.60402 * 6 2 1 8 8 C 1.50702 * 109.91881 * 94.80245 * 6 2 1 9 9 O 1.21291 * 119.99735 * 17.59512 * 8 6 2 10 10 N 1.34770 * 120.00553 * 197.58897 * 8 6 2 11 11 C 1.46960 * 120.59804 * 180.02562 * 10 8 6 12 12 C 1.53372 * 108.64017 * 235.25306 * 11 10 8 13 13 N 1.46969 * 108.62829 * 310.57426 * 12 11 10 14 14 C 1.34781 * 120.59193 * 235.19725 * 13 12 11 15 15 O 1.21589 * 120.00014 * 5.21694 * 14 13 12 16 16 N 1.34773 * 119.99861 * 185.21365 * 14 13 12 17 17 C 1.46501 * 119.99877 * 175.01071 * 16 14 13 18 18 C 1.50706 * 109.47166 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99498 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00205 * 180.02562 * 18 17 16 21 21 N 1.31524 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00119 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47439 * 59.99794 * 22 20 18 24 24 H 1.48505 * 109.47189 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47188 * 299.99375 * 22 20 18 26 26 C 1.46960 * 118.81489 * 55.48225 * 13 12 11 27 27 C 1.46965 * 120.59328 * 0.02562 * 10 8 6 28 28 H 1.08998 * 109.47462 * 302.60621 * 1 2 3 29 29 H 1.09003 * 109.46837 * 62.60552 * 1 2 3 30 30 H 1.09005 * 109.47053 * 182.60813 * 1 2 3 31 31 H 1.09005 * 110.66651 * 41.28023 * 3 2 1 32 32 H 1.09001 * 110.66300 * 278.15736 * 3 2 1 33 33 H 1.09007 * 110.72377 * 204.22863 * 4 3 2 34 34 H 1.09001 * 110.87936 * 81.01304 * 4 3 2 35 35 H 1.09000 * 110.30746 * 263.04769 * 5 4 3 36 36 H 1.08990 * 110.39215 * 140.92143 * 5 4 3 37 37 H 1.09005 * 109.61192 * 115.50613 * 11 10 8 38 38 H 1.09007 * 109.61131 * 354.99549 * 11 10 8 39 39 H 1.09002 * 109.61388 * 190.83562 * 12 11 10 40 40 H 1.08994 * 109.61008 * 70.31468 * 12 11 10 41 41 H 0.97001 * 119.99949 * 355.00422 * 16 14 13 42 42 H 1.08999 * 109.47127 * 59.99790 * 17 16 14 43 43 H 1.09002 * 109.47274 * 299.99823 * 17 16 14 44 44 H 0.96992 * 119.99870 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.61612 * 64.25865 * 26 13 12 46 46 H 1.09001 * 109.61290 * 184.77397 * 26 13 12 47 47 H 1.08998 * 109.61324 * 244.49096 * 27 10 8 48 48 H 1.09003 * 109.60857 * 4.83218 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 0.5227 5 6 3.2982 0.1054 1.5931 6 6 1.9990 -0.6352 1.2260 7 1 1.2770 -0.5431 2.0374 8 6 2.2937 -2.0898 0.9643 9 8 2.3970 -2.4921 -0.1753 10 7 2.4426 -2.9436 1.9963 11 6 2.7308 -4.3645 1.7561 12 6 1.6664 -5.2079 2.4688 13 7 1.5430 -4.7346 3.8548 14 6 1.6909 -5.5887 4.8869 15 8 2.0218 -6.7403 4.6805 16 7 1.4721 -5.1661 6.1479 17 6 1.5257 -6.1189 7.2594 18 6 1.2470 -5.3978 8.5531 19 1 1.0501 -4.3360 8.5478 20 6 1.2444 -6.0935 9.7434 21 7 1.4847 -7.3866 9.7499 22 14 0.8998 -5.1996 11.3469 23 1 -0.4496 -4.5822 11.2894 24 1 0.9540 -6.1655 12.4737 25 1 1.9204 -4.1407 11.5527 26 6 1.2491 -3.3149 4.0950 27 6 2.3197 -2.4703 3.3823 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4729 -0.9125 30 1 -0.3633 -1.0266 0.0468 31 1 1.4237 2.0205 0.6729 32 1 2.0041 1.7976 -1.0096 33 1 3.8123 2.1353 0.9716 34 1 4.1141 0.8847 -0.2771 35 1 3.2135 0.5487 2.5853 36 1 4.1467 -0.5777 1.5559 37 1 3.7167 -4.6097 2.1512 38 1 2.7020 -4.5677 0.6856 39 1 1.9671 -6.2556 2.4655 40 1 0.7099 -5.0975 1.9581 41 1 1.2792 -4.2311 6.3194 42 1 2.5159 -6.5724 7.3018 43 1 0.7763 -6.8960 7.1083 44 1 1.4825 -7.8761 10.5872 45 1 0.2636 -3.0728 3.6973 46 1 1.2742 -3.1121 5.1657 47 1 3.2764 -2.5810 3.8929 48 1 2.0224 -1.4216 3.3857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408369481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:56 Heat of formation + Delta-G solvation = -33.485565 kcal Electronic energy + Delta-G solvation = -28402.863341 eV Core-core repulsion = 24493.590888 eV Total energy + Delta-G solvation = -3909.272453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86459 -39.66469 -38.29773 -36.75187 -34.34873 -33.91181 -32.64900 -32.42426 -31.50828 -29.80091 -28.01198 -26.69073 -26.02560 -24.11394 -23.40711 -22.54664 -21.59683 -21.34801 -19.81981 -18.99566 -18.25012 -17.05728 -16.56417 -16.31780 -15.98872 -15.79958 -15.32215 -15.23095 -15.04391 -14.71254 -14.41160 -14.10877 -13.96122 -13.71295 -13.62688 -13.28112 -13.15594 -12.84868 -12.58617 -12.30418 -12.06348 -11.94737 -11.81343 -11.77586 -11.67579 -11.55478 -11.44180 -11.33755 -11.19554 -10.99285 -10.90592 -10.32155 -9.87693 -9.46289 -9.41221 -9.21114 -8.77328 -8.76396 -8.33150 -7.78245 -6.18327 -4.25496 2.45435 2.57350 3.13278 3.22737 3.28272 3.29602 3.61308 3.80465 4.08506 4.17701 4.26372 4.39802 4.41494 4.59768 4.63601 4.73013 4.85370 4.96510 4.99433 5.00654 5.06526 5.08170 5.17595 5.22077 5.26881 5.33977 5.36535 5.45138 5.52834 5.55040 5.61280 5.62690 5.74025 5.76023 5.91573 6.22688 6.41260 6.56387 6.62856 7.02627 7.21853 7.44724 7.48167 7.53393 7.79760 7.97944 8.07221 8.69964 8.83768 9.24921 9.42901 10.91827 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.002620 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.328118 B =10684.668512 C =11615.862164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.499 5.499 3 C 0.036 3.964 4 C -0.122 4.122 5 C -0.120 4.120 6 C 0.047 3.953 7 H 0.077 0.923 8 C 0.523 3.477 9 O -0.517 6.517 10 N -0.613 5.613 11 C 0.099 3.901 12 C 0.119 3.881 13 N -0.639 5.639 14 C 0.698 3.302 15 O -0.595 6.595 16 N -0.729 5.729 17 C 0.266 3.734 18 C -0.543 4.543 19 H 0.061 0.939 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.099 3.901 27 C 0.091 3.909 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.385 0.615 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.267 0.733 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 19.711 -16.938 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.223 5.223 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.065 4.065 7 H 0.094 0.906 8 C 0.310 3.690 9 O -0.391 6.391 10 N -0.348 5.348 11 C -0.024 4.024 12 C -0.005 4.005 13 N -0.379 5.379 14 C 0.399 3.601 15 O -0.473 6.473 16 N -0.383 5.383 17 C 0.145 3.855 18 C -0.582 4.582 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.026 4.026 27 C -0.033 4.033 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.219 0.781 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.923 18.127 -18.001 25.564 hybrid contribution -0.697 1.302 1.915 2.419 sum 0.226 19.430 -16.086 25.225 Atomic orbital electron populations 1.22544 0.87104 1.02382 1.01109 1.64329 1.08352 1.14545 1.35096 1.23277 0.94993 0.89257 1.01620 1.22483 0.96812 0.98264 0.98447 1.22368 0.96073 0.97777 0.99666 1.22405 0.98344 0.92765 0.92995 0.90557 1.20380 0.76713 0.87246 0.84663 1.90686 1.49192 1.77950 1.21284 1.48069 1.71553 1.09201 1.06012 1.22059 0.98828 0.79287 1.02250 1.21732 0.98262 1.00083 0.80450 1.47238 1.77288 1.07832 1.05550 1.16063 0.78689 0.84379 0.80983 1.90871 1.54907 1.17569 1.83966 1.45887 1.74015 1.13025 1.05325 1.18997 0.97653 0.87692 0.81116 1.21157 1.50679 0.95154 0.91182 0.92089 1.24941 0.94825 0.94885 0.99321 1.69967 1.47637 1.07031 1.27531 0.86475 0.78833 0.79291 0.82281 1.20099 1.21058 1.20078 1.22018 0.97797 0.81641 1.01122 1.22312 1.00431 0.98526 0.82018 0.95207 0.90750 0.91238 0.93400 0.89511 0.90492 0.90335 0.90186 0.90413 0.90886 0.88045 0.87593 0.91834 0.78066 0.95615 0.95803 0.92359 0.91275 0.88776 0.90286 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.40 60.06 0.56 0.70 16 2 N -0.50 -4.72 4.75 -232.16 -1.10 -5.82 16 3 C 0.04 0.25 6.56 -1.90 -0.01 0.23 16 4 C -0.12 -0.78 7.06 -24.87 -0.18 -0.96 16 5 C -0.12 -0.84 6.05 -25.37 -0.15 -1.00 16 6 C 0.05 0.41 1.95 -67.80 -0.13 0.28 16 7 H 0.08 0.56 6.26 -51.93 -0.32 0.23 16 8 C 0.52 6.19 6.74 -10.99 -0.07 6.12 16 9 O -0.52 -8.12 15.96 5.55 0.09 -8.03 16 10 N -0.61 -6.64 2.95 -172.18 -0.51 -7.15 16 11 C 0.10 1.18 6.59 -3.60 -0.02 1.15 16 12 C 0.12 1.59 6.60 -3.59 -0.02 1.57 16 13 N -0.64 -9.53 2.94 -177.91 -0.52 -10.05 16 14 C 0.70 14.13 8.29 -86.92 -0.72 13.41 16 15 O -0.59 -14.59 15.76 5.29 0.08 -14.51 16 16 N -0.73 -15.16 5.46 -66.41 -0.36 -15.52 16 17 C 0.27 7.00 5.43 -5.19 -0.03 6.97 16 18 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 19 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.88 -25.78 13.29 55.43 0.74 -25.04 16 22 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.10 1.06 6.59 -3.34 -0.02 1.04 16 27 C 0.09 0.80 6.35 -3.34 -0.02 0.78 16 28 H 0.03 0.19 8.01 -51.93 -0.42 -0.22 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.27 7.96 -51.93 -0.41 -0.14 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.63 7.68 -51.93 -0.40 0.23 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.23 6.99 -51.92 -0.36 0.87 16 39 H 0.11 1.58 6.99 -51.93 -0.36 1.22 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.38 6.73 5.79 -40.82 -0.24 6.50 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.96 5.61 -51.93 -0.29 0.67 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.56 5.30 -51.93 -0.28 0.28 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -35.19 378.52 -9.83 -45.02 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.69 Total: 2.80 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: -1.24 Total: 17.20 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -1.76 Total: -63.59 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.17 Total: -22.54 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.19 -9.83 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408369481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.537 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds