Wall clock time and date at job start Fri Apr 10 2020 18:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 110.99727 * 2 1 4 4 C 1.50707 * 109.47027 * 293.95260 * 3 2 1 5 5 H 1.07993 * 120.00000 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99666 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00329 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99688 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47411 * 59.99959 * 8 6 4 10 10 H 1.48499 * 109.47136 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47091 * 299.99933 * 8 6 4 12 12 C 1.46892 * 110.99949 * 123.94995 * 2 1 3 13 13 C 1.53004 * 109.47145 * 160.25787 * 12 2 1 14 14 H 1.09001 * 109.46847 * 57.28811 * 13 12 2 15 15 O 1.42903 * 109.46962 * 297.28493 * 13 12 2 16 16 C 1.52998 * 109.47113 * 177.28461 * 13 12 2 17 17 N 1.46898 * 109.47160 * 184.99963 * 16 13 12 18 18 C 1.47619 * 111.00266 * 266.16273 * 17 16 13 19 19 C 1.52745 * 87.74275 * 221.88175 * 18 17 16 20 20 C 1.53670 * 115.20276 * 140.79419 * 19 18 17 21 21 C 1.55488 * 101.97232 * 111.17644 * 20 19 18 22 22 C 1.55014 * 101.04228 * 33.49631 * 21 20 19 23 23 O 1.42413 * 116.06751 * 269.18644 * 19 18 17 24 24 C 1.47622 * 111.00267 * 170.00161 * 17 16 13 25 25 H 1.09003 * 113.50599 * 23.40129 * 24 17 16 26 26 C 1.52998 * 113.50836 * 252.84046 * 24 17 16 27 27 C 1.53002 * 117.50027 * 148.24909 * 26 24 17 28 28 C 1.53000 * 117.50033 * 79.59059 * 26 24 17 29 29 H 1.09002 * 109.46701 * 65.26692 * 1 2 3 30 30 H 1.09002 * 109.46790 * 185.26254 * 1 2 3 31 31 H 1.08995 * 109.47208 * 305.26526 * 1 2 3 32 32 H 1.08999 * 109.47217 * 53.95234 * 3 2 1 33 33 H 1.09003 * 109.47243 * 173.95261 * 3 2 1 34 34 H 0.96998 * 120.00279 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47418 * 280.25764 * 12 2 1 36 36 H 1.09004 * 109.47337 * 40.25584 * 12 2 1 37 37 H 0.96701 * 114.00050 * 300.00056 * 15 13 12 38 38 H 1.09000 * 109.47579 * 305.00638 * 16 13 12 39 39 H 1.09005 * 109.47279 * 65.00330 * 16 13 12 40 40 H 1.09010 * 113.50430 * 336.59602 * 18 17 16 41 41 H 1.08991 * 113.51196 * 107.15826 * 18 17 16 42 42 H 1.08993 * 110.92660 * 229.34543 * 20 19 18 43 43 H 1.09004 * 110.93041 * 353.00870 * 20 19 18 44 44 H 1.08997 * 111.10454 * 275.55773 * 21 20 19 45 45 H 1.09000 * 111.14176 * 151.45635 * 21 20 19 46 46 H 1.08998 * 110.30518 * 205.04249 * 22 21 20 47 47 H 1.09002 * 110.37998 * 82.93277 * 22 21 20 48 48 H 1.08996 * 115.55071 * 293.92051 * 26 24 17 49 49 H 1.09000 * 117.50256 * 359.97438 * 27 26 24 50 50 H 1.08999 * 117.49887 * 145.01994 * 27 26 24 51 51 H 1.09003 * 117.50107 * 214.98077 * 28 26 24 52 52 H 1.09004 * 117.50025 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0276 3.3492 -1.5289 7 7 2.7135 4.0013 -0.6159 8 14 1.5838 4.1865 -3.1387 9 1 0.1067 4.2236 -3.2866 10 1 2.1169 5.5725 -3.1392 11 1 2.1756 3.4287 -4.2704 12 6 1.9954 -0.7659 1.1376 13 6 3.4458 -1.1642 0.8568 14 1 4.0379 -0.2693 0.6656 15 8 3.4919 -2.0194 -0.2872 16 6 4.0155 -1.9032 2.0693 17 7 5.4412 -2.1802 1.8485 18 6 5.6355 -3.5244 1.2701 19 6 6.8202 -3.6953 2.2190 20 6 6.9666 -5.0943 2.8378 21 6 8.2596 -5.6173 2.1506 22 6 9.0683 -4.3033 2.0006 23 8 8.0888 -3.2883 1.7159 24 6 6.0814 -2.6754 3.0830 25 1 5.3805 -3.1270 3.7852 26 6 7.0063 -1.6514 3.7439 27 6 7.1269 -1.6888 5.2686 28 6 6.3562 -0.5542 4.5891 29 1 -0.3633 0.4300 -0.9334 30 1 -0.3633 -1.0234 0.0943 31 1 -0.3633 0.5933 0.8390 32 1 1.5611 1.9274 0.8309 33 1 3.0797 1.3445 0.1083 34 1 2.9881 4.9174 -0.7778 35 1 1.9548 -0.1531 2.0382 36 1 1.3935 -1.6632 1.2813 37 1 2.9855 -2.8372 -0.1876 38 1 3.8991 -1.2849 2.9594 39 1 3.4800 -2.8426 2.2070 40 1 4.8123 -4.2090 1.4749 41 1 5.9199 -3.5082 0.2181 42 1 7.0981 -5.0305 3.9178 43 1 6.1114 -5.7222 2.5874 44 1 8.0374 -6.0546 1.1772 45 1 8.7830 -6.3297 2.7882 46 1 9.7766 -4.3871 1.1764 47 1 9.5933 -4.0728 2.9277 48 1 7.8975 -1.3868 3.1749 49 1 6.5471 -2.4427 5.8011 50 1 8.0974 -1.4485 5.7028 51 1 6.8200 0.4322 4.5765 52 1 5.2695 -0.5616 4.6741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414128217.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:00 Heat of formation + Delta-G solvation = -46.668129 kcal Electronic energy + Delta-G solvation = -28989.259202 eV Core-core repulsion = 25182.955454 eV Total energy + Delta-G solvation = -3806.303749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18568 -39.50588 -38.56307 -37.43140 -36.69744 -34.62178 -33.10185 -32.33918 -29.97676 -29.21744 -27.54416 -27.28425 -25.75912 -24.24002 -23.22635 -23.03033 -22.29535 -21.78814 -21.59679 -20.29848 -18.62835 -17.79084 -17.39295 -17.27642 -16.78468 -16.66130 -16.31712 -16.14498 -15.85179 -15.58283 -15.28671 -15.14585 -14.88163 -14.75977 -14.15684 -14.01047 -13.94519 -13.86153 -13.32923 -13.14239 -12.94401 -12.65592 -12.61390 -12.57167 -12.52805 -12.41385 -12.38761 -12.27047 -12.18239 -11.99442 -11.81496 -11.58749 -11.49593 -11.36060 -11.11609 -11.03635 -10.64892 -10.61714 -10.24418 -9.66544 -8.96270 -8.21351 -6.31537 1.37759 1.42748 1.50196 2.39050 2.47454 2.90698 3.08716 3.12122 3.37092 3.44085 3.55123 3.68482 3.72466 3.88660 3.99073 4.01285 4.07520 4.13507 4.14649 4.22050 4.28755 4.38044 4.38168 4.47270 4.53929 4.57454 4.67582 4.74430 4.75873 4.76611 4.78294 4.82575 4.86623 4.92565 4.98571 5.01130 5.05987 5.07080 5.09881 5.21242 5.22495 5.27691 5.29260 5.33707 5.51118 5.63232 6.04789 6.11247 6.28964 6.33949 6.63905 6.84234 7.08056 7.37866 8.89872 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002803 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.766474 B = 9986.201193 C =10198.887298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.212 3.788 4 C -0.525 4.525 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.271 1.271 12 C 0.028 3.972 13 C 0.136 3.864 14 H 0.051 0.949 15 O -0.555 6.555 16 C 0.004 3.996 17 N -0.481 5.481 18 C 0.003 3.997 19 C 0.092 3.908 20 C -0.133 4.133 21 C -0.147 4.147 22 C 0.037 3.963 23 O -0.372 6.372 24 C 0.056 3.944 25 H 0.101 0.899 26 C -0.136 4.136 27 C -0.152 4.152 28 C -0.192 4.192 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.007 0.993 32 H -0.042 1.042 33 H -0.003 1.003 34 H 0.264 0.736 35 H 0.025 0.975 36 H 0.100 0.900 37 H 0.375 0.625 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.102 0.898 51 H 0.083 0.917 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 -24.165 13.410 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.267 5.267 3 C 0.086 3.914 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.196 1.196 12 C -0.101 4.101 13 C 0.075 3.925 14 H 0.069 0.931 15 O -0.360 6.360 16 C -0.125 4.125 17 N -0.203 5.203 18 C -0.125 4.125 19 C 0.051 3.949 20 C -0.171 4.171 21 C -0.184 4.184 22 C -0.039 4.039 23 O -0.291 6.291 24 C -0.053 4.053 25 H 0.119 0.881 26 C -0.155 4.155 27 C -0.189 4.189 28 C -0.229 4.229 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.025 0.975 32 H -0.024 1.024 33 H 0.016 0.984 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.118 0.882 37 H 0.223 0.777 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.123 0.877 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.128 0.872 50 H 0.121 0.879 51 H 0.102 0.898 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.236 -22.933 12.322 27.624 hybrid contribution -1.040 0.703 0.579 1.383 sum 8.195 -22.231 12.901 26.978 Atomic orbital electron populations 1.22218 0.87296 1.00953 1.00034 1.61926 1.07995 1.15044 1.41733 1.19353 0.93405 0.83939 0.94732 1.21453 1.34882 0.97489 1.02455 0.92039 1.25966 0.94987 0.98128 1.00856 1.70088 1.39312 1.11881 1.36363 0.85421 0.78986 0.77125 0.79003 1.18800 1.20664 1.19576 1.22810 0.96987 0.98586 0.91702 1.21534 0.93513 0.92138 0.85290 0.93117 1.86684 1.74718 1.34707 1.39938 1.23249 0.90429 1.00902 0.97927 1.68874 1.11990 1.26044 1.13361 1.24257 0.97341 0.90343 1.00573 1.22620 0.84859 0.93910 0.93463 1.22985 0.99804 0.92937 1.01334 1.23256 0.95605 0.97301 1.02255 1.23702 0.91661 0.86983 1.01506 1.88380 1.17543 1.44126 1.79060 1.23408 0.95332 0.93753 0.92760 0.88121 1.21878 1.00654 0.99931 0.93028 1.23035 1.02200 1.00603 0.93100 1.22865 0.99542 0.94652 1.05861 0.92769 0.89646 0.97454 1.02405 0.98446 0.92719 0.95715 0.88185 0.77723 0.90630 0.90488 0.87998 0.91223 0.88821 0.88152 0.90256 0.87700 0.89455 0.91414 0.89294 0.87176 0.87924 0.89836 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.31 127.69 1.19 2.87 16 2 N -0.54 -24.57 4.60 -927.02 -4.26 -28.83 16 3 C 0.21 12.11 4.55 85.56 0.39 12.50 16 4 C -0.52 -31.73 8.58 25.60 0.22 -31.51 16 5 H 0.06 3.64 7.10 -2.91 -0.02 3.62 16 6 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 7 N -0.94 -59.54 13.29 21.45 0.28 -59.26 16 8 Si 0.97 46.73 29.54 68.60 2.03 48.76 16 9 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 12 C 0.03 1.00 4.65 86.31 0.40 1.40 16 13 C 0.14 4.81 3.29 30.60 0.10 4.91 16 14 H 0.05 2.41 6.72 -2.39 -0.02 2.39 16 15 O -0.56 -19.46 12.58 -148.98 -1.87 -21.33 16 16 C 0.00 0.11 4.53 86.30 0.39 0.50 16 17 N -0.48 -13.41 6.10 -903.04 -5.51 -18.92 16 18 C 0.00 0.08 6.56 83.74 0.55 0.63 16 19 C 0.09 1.84 1.57 -10.74 -0.02 1.82 16 20 C -0.13 -1.52 6.39 31.68 0.20 -1.32 16 21 C -0.15 -1.55 7.16 32.14 0.23 -1.31 16 22 C 0.04 0.60 7.79 72.67 0.57 1.16 16 23 O -0.37 -9.30 9.96 -148.98 -1.48 -10.78 16 24 C 0.06 1.21 2.77 42.35 0.12 1.33 16 25 H 0.10 1.70 7.87 -2.39 -0.02 1.68 16 26 C -0.14 -3.21 5.49 -10.79 -0.06 -3.27 16 27 C -0.15 -2.63 10.24 30.62 0.31 -2.31 16 28 C -0.19 -4.50 10.25 30.62 0.31 -4.19 16 29 H 0.05 2.28 7.01 -2.39 -0.02 2.27 16 30 H 0.08 2.57 7.85 -2.39 -0.02 2.55 16 31 H 0.01 0.27 8.07 -2.39 -0.02 0.26 16 32 H -0.04 -2.56 8.07 -2.39 -0.02 -2.57 16 33 H 0.00 -0.16 6.60 -2.39 -0.02 -0.17 16 34 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 36 H 0.10 2.68 7.75 -2.38 -0.02 2.66 16 37 H 0.38 9.19 9.05 -74.06 -0.67 8.52 16 38 H 0.08 1.99 7.75 -2.39 -0.02 1.98 16 39 H 0.08 1.45 7.30 -2.38 -0.02 1.44 16 40 H 0.10 1.62 7.22 -2.38 -0.02 1.61 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 43 H 0.10 0.83 7.81 -2.39 -0.02 0.81 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.09 2.56 7.34 -2.39 -0.02 2.55 16 49 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 52 H 0.09 2.07 7.81 -2.38 -0.02 2.05 16 Total: -1.00 -78.34 406.86 -5.23 -83.57 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.21 Total: 23.23 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 5.37 Total: -16.43 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -9.48 Total: -107.01 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -3.36 Total: -32.12 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -78.34 -5.23 -83.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414128217.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.898 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds