Wall clock time and date at job start Fri Apr 10 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 N 1.46890 * 109.52290 * 177.55818 * 5 4 3 7 7 C 1.46853 * 111.00007 * 184.52651 * 6 5 4 8 8 C 1.53035 * 109.52338 * 174.15880 * 7 6 5 9 9 C 1.53123 * 109.27934 * 59.18191 * 8 7 6 10 10 N 1.46497 * 109.52289 * 182.43892 * 9 8 7 11 11 C 1.34775 * 120.00140 * 274.67761 * 10 9 8 12 12 O 1.21587 * 119.99560 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00259 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00303 * 180.02562 * 13 11 10 15 15 C 1.50693 * 109.47146 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00337 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99886 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00099 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00152 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46909 * 90.00129 * 19 17 15 21 21 H 1.48501 * 109.47472 * 209.99807 * 19 17 15 22 22 H 1.48499 * 109.47228 * 330.00122 * 19 17 15 23 23 C 1.53123 * 109.15651 * 302.34517 * 9 8 7 24 24 C 1.46845 * 111.00110 * 60.31834 * 6 5 4 25 25 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 26 26 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 27 27 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 28 28 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 29 29 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 30 30 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 31 31 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 32 32 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 33 33 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 34 34 H 1.08994 * 109.57223 * 297.72045 * 5 4 3 35 35 H 1.08993 * 109.46229 * 294.17349 * 7 6 5 36 36 H 1.08998 * 109.46098 * 54.14525 * 7 6 5 37 37 H 1.09003 * 109.50756 * 299.23814 * 8 7 6 38 38 H 1.08998 * 109.50251 * 179.12180 * 8 7 6 39 39 H 1.08998 * 109.52423 * 62.24471 * 9 8 7 40 40 H 0.96999 * 120.00113 * 94.68439 * 10 9 8 41 41 H 0.97007 * 120.00078 * 0.02562 * 13 11 10 42 42 H 1.08993 * 109.46792 * 300.00503 * 14 13 11 43 43 H 1.09003 * 109.46577 * 60.00247 * 14 13 11 44 44 H 0.96994 * 119.99723 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.50035 * 297.70901 * 23 9 8 46 46 H 1.09002 * 109.53032 * 177.61793 * 23 9 8 47 47 H 1.08996 * 109.46072 * 305.85246 * 24 6 5 48 48 H 1.08998 * 109.46674 * 65.83301 * 24 6 5 49 49 H 1.09001 * 109.50326 * 182.41022 * 25 5 4 50 50 H 1.08996 * 109.53714 * 62.30612 * 25 5 4 51 51 H 1.09005 * 109.46673 * 294.18102 * 26 2 1 52 52 H 1.09007 * 109.46600 * 54.15859 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 7 5.5755 0.4487 0.8476 7 6 6.1737 -0.4002 1.8860 8 6 7.6649 -0.5874 1.5972 9 6 8.3509 0.7813 1.5730 10 7 9.7674 0.6131 1.2395 11 6 10.6598 0.3347 2.2103 12 8 10.2891 0.2226 3.3629 13 7 11.9631 0.1804 1.9037 14 6 12.9331 -0.1228 2.9589 15 6 14.3091 -0.2441 2.3566 16 1 14.4473 -0.1092 1.2940 17 6 15.3915 -0.5283 3.1619 18 7 15.2231 -0.6941 4.4557 19 14 17.0971 -0.6794 2.4152 20 1 17.7586 0.6502 2.4191 21 1 17.9044 -1.6361 3.2142 22 1 16.9844 -1.1721 1.0189 23 6 7.6775 1.6622 0.5169 24 6 6.1860 1.7842 0.8369 25 6 3.5182 -0.8715 1.0210 26 6 1.9952 -0.7707 1.1338 27 1 -0.3634 0.4471 0.9253 28 1 -0.3633 -1.0249 -0.0754 29 1 -0.3633 0.5778 -0.8499 30 1 1.5634 1.9257 -0.8330 31 1 1.7324 1.8608 0.9376 32 1 3.9099 2.3512 -0.1310 33 1 3.7820 0.8572 -1.0905 34 1 3.8896 1.0351 1.9565 35 1 6.0490 0.0742 2.8593 36 1 5.6798 -1.3718 1.8898 37 1 7.7900 -1.0744 0.6301 38 1 8.1117 -1.2047 2.3766 39 1 8.2595 1.2520 2.5519 40 1 10.0631 0.7023 0.3200 41 1 12.2589 0.2702 0.9842 42 1 12.9293 0.6790 3.6971 43 1 12.6631 -1.0623 3.4413 44 1 15.9846 -0.8936 5.0222 45 1 7.8029 1.2106 -0.4672 46 1 8.1334 2.6523 0.5237 47 1 5.7010 2.3991 0.0788 48 1 6.0614 2.2484 1.8152 49 1 3.9098 -1.4302 1.8710 50 1 3.7814 -1.3842 0.0959 51 1 1.7324 -0.2708 2.0661 52 1 1.5636 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426450179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:05 Heat of formation + Delta-G solvation = -30.428907 kcal Electronic energy + Delta-G solvation = -27879.206818 eV Core-core repulsion = 24105.900006 eV Total energy + Delta-G solvation = -3773.306812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26585 -39.27250 -38.01738 -35.31694 -34.00602 -32.90444 -32.17527 -31.77830 -30.56209 -30.11311 -27.14764 -26.27444 -24.27452 -23.99992 -22.55130 -22.30029 -21.81813 -20.12643 -19.95648 -19.88709 -17.94196 -16.99794 -16.14538 -15.78148 -15.56659 -15.51501 -15.16442 -15.05284 -14.73965 -14.61641 -14.16006 -13.95281 -13.80254 -13.63168 -13.39524 -13.27932 -13.01290 -12.85193 -12.68159 -12.31713 -11.93090 -11.89937 -11.76340 -11.60190 -11.48523 -11.34382 -11.24174 -11.04013 -10.93528 -10.85670 -10.78516 -10.54965 -10.27204 -10.25491 -9.34358 -9.32622 -8.75494 -8.71806 -8.61862 -8.48996 -7.70962 -6.12553 -4.18878 3.26692 3.31722 3.34400 3.43489 3.50182 3.60241 4.00517 4.33799 4.35388 4.48412 4.63583 4.72265 4.76859 4.85129 4.94012 4.98845 5.04576 5.10566 5.13909 5.15317 5.21106 5.23491 5.25242 5.26904 5.29918 5.42007 5.44279 5.50164 5.53800 5.56096 5.63027 5.71293 5.75047 5.86941 5.92333 6.01269 6.04876 6.19953 6.37589 6.64276 6.65808 6.91213 6.93386 6.99526 7.18854 7.56650 7.60233 7.61151 7.95919 8.09332 8.80602 9.00589 9.38604 9.53015 10.97714 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.044458 B = 0.001815 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.654991 B =15426.362855 C =15673.449815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.057 3.943 4 C -0.110 4.110 5 C 0.086 3.914 6 N -0.532 5.532 7 C 0.056 3.944 8 C -0.126 4.126 9 C 0.166 3.834 10 N -0.753 5.753 11 C 0.693 3.307 12 O -0.603 6.603 13 N -0.730 5.730 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.122 4.122 24 C 0.058 3.942 25 C -0.113 4.113 26 C 0.057 3.943 27 H 0.023 0.977 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.391 0.609 41 H 0.386 0.614 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.265 0.735 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.082 0.918 51 H 0.031 0.969 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.719 3.853 -11.331 31.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.148 4.148 5 C -0.023 4.023 6 N -0.257 5.257 7 C -0.072 4.072 8 C -0.166 4.166 9 C 0.060 3.940 10 N -0.409 5.409 11 C 0.393 3.607 12 O -0.482 6.482 13 N -0.382 5.382 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.161 4.161 24 C -0.071 4.071 25 C -0.150 4.150 26 C -0.071 4.071 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.224 0.776 41 H 0.218 0.782 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.052 0.948 49 H 0.088 0.912 50 H 0.101 0.899 51 H 0.049 0.951 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.638 3.250 -10.910 30.817 hybrid contribution 0.811 0.756 0.434 1.190 sum -27.827 4.006 -10.476 30.002 Atomic orbital electron populations 1.22354 0.87295 1.02307 1.00398 1.61939 1.07502 1.13816 1.43503 1.22098 0.95581 0.89072 1.00403 1.21680 0.93433 0.99994 0.99689 1.21626 0.87404 0.96321 0.96929 1.62003 1.02865 1.12627 1.48174 1.22130 0.95180 0.97659 0.92251 1.22012 0.93470 0.98147 1.02936 1.20679 0.79414 0.95087 0.98804 1.45222 1.06976 1.78816 1.09863 1.16173 0.81505 0.78363 0.84685 1.90858 1.79280 1.59263 1.18791 1.45719 1.05518 1.74385 1.12619 1.18959 0.84665 0.96427 0.85361 1.21238 0.91801 1.50351 0.94579 0.91961 1.24949 0.99450 0.94889 0.94770 1.69983 1.31351 1.47122 1.03869 0.86412 0.83415 0.77975 0.79058 1.20512 1.21037 1.19789 1.21858 0.94336 1.00173 0.99693 1.22062 0.94475 0.90121 1.00392 1.21723 0.93477 0.96446 1.03405 1.22100 0.95566 0.98303 0.91162 0.95807 0.91298 0.91353 0.90535 0.95114 0.91372 0.89928 0.94661 0.94799 0.90184 0.91093 0.90678 0.90113 0.77644 0.78214 0.95836 0.95795 0.92507 0.90574 0.90938 0.90132 0.94785 0.91159 0.89901 0.95069 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.59 60.07 0.58 0.72 16 2 N -0.54 -4.03 4.91 -242.94 -1.19 -5.22 16 3 C 0.06 0.39 5.46 -3.83 -0.02 0.37 16 4 C -0.11 -0.81 5.09 -26.65 -0.14 -0.94 16 5 C 0.09 0.71 2.01 -67.59 -0.14 0.58 16 6 N -0.53 -5.06 4.53 -226.55 -1.03 -6.08 16 7 C 0.06 0.60 5.13 -3.83 -0.02 0.58 16 8 C -0.13 -1.62 5.67 -26.65 -0.15 -1.77 16 9 C 0.17 2.23 2.52 -67.80 -0.17 2.06 16 10 N -0.75 -11.45 5.09 -58.56 -0.30 -11.75 16 11 C 0.69 14.54 8.54 -86.93 -0.74 13.80 16 12 O -0.60 -15.26 16.01 5.29 0.08 -15.17 16 13 N -0.73 -15.94 5.55 -66.42 -0.37 -16.31 16 14 C 0.27 7.28 5.43 -5.19 -0.03 7.25 16 15 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.12 -1.22 5.57 -26.65 -0.15 -1.36 16 24 C 0.06 0.53 5.22 -3.83 -0.02 0.51 16 25 C -0.11 -0.89 4.93 -26.65 -0.13 -1.02 16 26 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 27 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.79 5.96 -51.93 -0.31 0.48 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 40 H 0.39 4.80 8.62 -40.82 -0.35 4.45 16 41 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 42 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.62 6.07 -51.93 -0.32 0.31 16 48 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.54 6.37 -51.93 -0.33 0.21 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 52 H 0.08 0.50 8.12 -51.92 -0.42 0.08 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -32.84 397.30 -12.18 -45.01 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -9.51 Total: 5.61 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -1.57 Total: 7.56 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -2.15 Total: -65.05 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.84 -12.18 -45.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.583 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds