Wall clock time and date at job start Fri Apr 10 2020 18:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 N 1.46890 * 109.52290 * 177.55818 * 5 4 3 7 7 C 1.46853 * 111.00007 * 184.52651 * 6 5 4 8 8 C 1.53035 * 109.52338 * 174.15880 * 7 6 5 9 9 C 1.53123 * 109.27934 * 59.18191 * 8 7 6 10 10 N 1.46497 * 109.52289 * 182.43892 * 9 8 7 11 11 C 1.34775 * 120.00140 * 274.67761 * 10 9 8 12 12 O 1.21587 * 119.99560 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00259 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00303 * 180.02562 * 13 11 10 15 15 C 1.50693 * 109.47146 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00337 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99886 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00099 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00152 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46909 * 90.00129 * 19 17 15 21 21 H 1.48501 * 109.47472 * 209.99807 * 19 17 15 22 22 H 1.48499 * 109.47228 * 330.00122 * 19 17 15 23 23 C 1.53123 * 109.15651 * 302.34517 * 9 8 7 24 24 C 1.46845 * 111.00110 * 60.31834 * 6 5 4 25 25 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 26 26 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 27 27 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 28 28 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 29 29 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 30 30 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 31 31 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 32 32 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 33 33 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 34 34 H 1.08994 * 109.57223 * 297.72045 * 5 4 3 35 35 H 1.08993 * 109.46229 * 294.17349 * 7 6 5 36 36 H 1.08998 * 109.46098 * 54.14525 * 7 6 5 37 37 H 1.09003 * 109.50756 * 299.23814 * 8 7 6 38 38 H 1.08998 * 109.50251 * 179.12180 * 8 7 6 39 39 H 1.08998 * 109.52423 * 62.24471 * 9 8 7 40 40 H 0.96999 * 120.00113 * 94.68439 * 10 9 8 41 41 H 0.97007 * 120.00078 * 0.02562 * 13 11 10 42 42 H 1.08993 * 109.46792 * 300.00503 * 14 13 11 43 43 H 1.09003 * 109.46577 * 60.00247 * 14 13 11 44 44 H 0.96994 * 119.99723 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.50035 * 297.70901 * 23 9 8 46 46 H 1.09002 * 109.53032 * 177.61793 * 23 9 8 47 47 H 1.08996 * 109.46072 * 305.85246 * 24 6 5 48 48 H 1.08998 * 109.46674 * 65.83301 * 24 6 5 49 49 H 1.09001 * 109.50326 * 182.41022 * 25 5 4 50 50 H 1.08996 * 109.53714 * 62.30612 * 25 5 4 51 51 H 1.09005 * 109.46673 * 294.18102 * 26 2 1 52 52 H 1.09007 * 109.46600 * 54.15859 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 7 5.5755 0.4487 0.8476 7 6 6.1737 -0.4002 1.8860 8 6 7.6649 -0.5874 1.5972 9 6 8.3509 0.7813 1.5730 10 7 9.7674 0.6131 1.2395 11 6 10.6598 0.3347 2.2103 12 8 10.2891 0.2226 3.3629 13 7 11.9631 0.1804 1.9037 14 6 12.9331 -0.1228 2.9589 15 6 14.3091 -0.2441 2.3566 16 1 14.4473 -0.1092 1.2940 17 6 15.3915 -0.5283 3.1619 18 7 15.2231 -0.6941 4.4557 19 14 17.0971 -0.6794 2.4152 20 1 17.7586 0.6502 2.4191 21 1 17.9044 -1.6361 3.2142 22 1 16.9844 -1.1721 1.0189 23 6 7.6775 1.6622 0.5169 24 6 6.1860 1.7842 0.8369 25 6 3.5182 -0.8715 1.0210 26 6 1.9952 -0.7707 1.1338 27 1 -0.3634 0.4471 0.9253 28 1 -0.3633 -1.0249 -0.0754 29 1 -0.3633 0.5778 -0.8499 30 1 1.5634 1.9257 -0.8330 31 1 1.7324 1.8608 0.9376 32 1 3.9099 2.3512 -0.1310 33 1 3.7820 0.8572 -1.0905 34 1 3.8896 1.0351 1.9565 35 1 6.0490 0.0742 2.8593 36 1 5.6798 -1.3718 1.8898 37 1 7.7900 -1.0744 0.6301 38 1 8.1117 -1.2047 2.3766 39 1 8.2595 1.2520 2.5519 40 1 10.0631 0.7023 0.3200 41 1 12.2589 0.2702 0.9842 42 1 12.9293 0.6790 3.6971 43 1 12.6631 -1.0623 3.4413 44 1 15.9846 -0.8936 5.0222 45 1 7.8029 1.2106 -0.4672 46 1 8.1334 2.6523 0.5237 47 1 5.7010 2.3991 0.0788 48 1 6.0614 2.2484 1.8152 49 1 3.9098 -1.4302 1.8710 50 1 3.7814 -1.3842 0.0959 51 1 1.7324 -0.2708 2.0661 52 1 1.5636 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426450179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:04 Heat of formation + Delta-G solvation = -56.018927 kcal Electronic energy + Delta-G solvation = -27880.316485 eV Core-core repulsion = 24105.900006 eV Total energy + Delta-G solvation = -3774.416478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28563 -40.53459 -38.94973 -36.51388 -35.91111 -34.45304 -33.67960 -32.49295 -31.31421 -31.16727 -29.04482 -27.01871 -25.22099 -24.99814 -24.16767 -23.07149 -22.69201 -21.74562 -20.99601 -20.60432 -19.66488 -18.09034 -17.79255 -17.18933 -16.52788 -16.47921 -16.23304 -16.09018 -15.81089 -15.76961 -15.39667 -15.04394 -14.85955 -14.82674 -14.39420 -14.24016 -14.09200 -13.99979 -13.93115 -13.47256 -13.32899 -12.99274 -12.89124 -12.70936 -12.42913 -12.37091 -12.21929 -12.16788 -12.14798 -12.08248 -11.89132 -11.55106 -11.46582 -11.44044 -11.15800 -11.01414 -10.79349 -10.19574 -9.56730 -9.30922 -9.27071 -8.27625 -6.44172 1.43982 1.46967 1.57984 1.90697 2.27090 2.40475 2.81008 3.00857 3.07269 3.53564 3.67478 3.76065 3.88781 3.95189 4.11244 4.15600 4.17645 4.25606 4.36106 4.40806 4.45236 4.52175 4.54217 4.60491 4.63886 4.71085 4.72502 4.74748 4.81181 4.88943 4.97373 5.02475 5.03683 5.04841 5.09607 5.15781 5.18501 5.25771 5.27536 5.28980 5.42842 5.50621 5.63152 5.71402 5.86257 6.08478 6.13709 6.14353 6.17479 6.31090 6.67867 7.25422 7.35302 7.75911 8.84758 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.044458 B = 0.001815 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.654991 B =15426.362855 C =15673.449815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.058 3.942 4 C -0.103 4.103 5 C 0.086 3.914 6 N -0.531 5.531 7 C 0.063 3.937 8 C -0.120 4.120 9 C 0.163 3.837 10 N -0.727 5.727 11 C 0.691 3.309 12 O -0.650 6.650 13 N -0.724 5.724 14 C 0.286 3.714 15 C -0.555 4.555 16 H 0.084 0.916 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.256 1.256 23 C -0.110 4.110 24 C 0.058 3.942 25 C -0.109 4.109 26 C 0.059 3.941 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.022 0.978 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.410 0.590 41 H 0.405 0.595 42 H -0.016 1.016 43 H -0.016 1.016 44 H 0.269 0.731 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.027 0.973 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.029 0.971 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.194 4.549 -14.375 32.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.071 4.071 4 C -0.141 4.141 5 C -0.022 4.022 6 N -0.255 5.255 7 C -0.065 4.065 8 C -0.159 4.159 9 C 0.057 3.943 10 N -0.383 5.383 11 C 0.391 3.609 12 O -0.533 6.533 13 N -0.377 5.377 14 C 0.162 3.838 15 C -0.593 4.593 16 H 0.102 0.898 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.810 3.190 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.179 1.179 23 C -0.148 4.148 24 C -0.070 4.070 25 C -0.147 4.147 26 C -0.069 4.069 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.247 0.753 41 H 0.240 0.760 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.122 0.878 48 H 0.045 0.955 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.047 0.953 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -29.165 3.969 -14.044 32.613 hybrid contribution 0.843 0.542 1.405 1.726 sum -28.323 4.511 -12.639 31.341 Atomic orbital electron populations 1.22389 0.86319 1.02815 1.00804 1.61965 1.08513 1.14109 1.43465 1.22110 0.95188 0.88982 1.00779 1.21627 0.93814 1.00151 0.98536 1.21667 0.86536 0.96774 0.97220 1.62032 1.03608 1.12713 1.47192 1.22007 0.93839 0.98526 0.92149 1.21899 0.94724 0.97163 1.02109 1.20873 0.78344 0.96121 0.98945 1.45007 1.06911 1.76777 1.09649 1.16347 0.81682 0.77986 0.84896 1.90828 1.80011 1.61161 1.21331 1.45303 1.05309 1.74717 1.12416 1.18391 0.86436 0.93009 0.85944 1.21609 0.91701 1.50288 0.95690 0.89789 1.26084 1.04500 0.94000 0.95065 1.70151 1.32989 1.48035 1.05793 0.85120 0.76978 0.78185 0.78677 1.19578 1.20966 1.17927 1.21800 0.94476 0.99821 0.98716 1.22127 0.93955 0.90128 1.00831 1.21672 0.94125 0.96065 1.02822 1.22067 0.94963 0.98713 0.91151 0.95695 0.90864 0.90551 0.89456 0.95260 0.90356 0.90665 0.95304 0.95975 0.89238 0.90174 0.94065 0.93064 0.75310 0.76022 0.99800 0.99800 0.92270 0.89050 0.89860 0.87792 0.95500 0.91322 0.90767 0.95287 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.59 127.69 1.22 1.47 16 2 N -0.56 -7.34 4.91 -922.54 -4.53 -11.87 16 3 C 0.06 0.68 5.46 86.33 0.47 1.15 16 4 C -0.10 -1.30 5.09 30.65 0.16 -1.14 16 5 C 0.09 1.32 2.01 45.00 0.09 1.41 16 6 N -0.53 -9.32 4.53 -870.68 -3.94 -13.26 16 7 C 0.06 1.34 5.13 86.32 0.44 1.79 16 8 C -0.12 -3.09 5.67 30.65 0.17 -2.92 16 9 C 0.16 4.32 2.52 45.07 0.11 4.44 16 10 N -0.73 -21.72 5.09 -457.43 -2.33 -24.05 16 11 C 0.69 29.72 8.54 179.06 1.53 31.25 16 12 O -0.65 -34.69 16.01 -3.99 -0.06 -34.76 16 13 N -0.72 -32.07 5.55 -482.31 -2.68 -34.75 16 14 C 0.29 16.22 5.43 85.63 0.46 16.69 16 15 C -0.56 -30.75 9.28 25.60 0.24 -30.51 16 16 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 19 Si 0.99 42.74 29.54 68.60 2.03 44.76 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 23 C -0.11 -1.94 5.57 30.65 0.17 -1.77 16 24 C 0.06 0.93 5.22 86.33 0.45 1.39 16 25 C -0.11 -1.61 4.93 30.65 0.15 -1.46 16 26 C 0.06 0.79 5.46 86.33 0.47 1.26 16 27 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16 30 H 0.09 0.84 8.09 -2.38 -0.02 0.83 16 31 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.08 0.82 6.43 -2.39 -0.02 0.81 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 1.73 5.96 -2.39 -0.01 1.72 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 1.70 7.58 -2.39 -0.02 1.68 16 40 H 0.41 9.21 8.62 -92.71 -0.80 8.41 16 41 H 0.40 14.71 8.34 -92.70 -0.77 13.94 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.10 1.26 6.07 -2.39 -0.01 1.25 16 48 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.07 1.02 6.37 -2.39 -0.02 1.00 16 50 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 52 H 0.08 0.99 8.12 -2.38 -0.02 0.97 16 Total: -1.00 -74.21 397.30 -5.29 -79.50 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.67 Total: 27.45 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.61 Total: 23.66 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -13.19 Total: -140.62 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.06 Total: -34.76 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -74.21 -5.29 -79.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.483 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds