Wall clock time and date at job start Fri Apr 10 2020 18:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00014 * 2 1 4 4 H 1.48502 * 109.46848 * 269.99595 * 3 2 1 5 5 H 1.48493 * 109.47425 * 29.99419 * 3 2 1 6 6 H 1.48500 * 109.47487 * 150.00078 * 3 2 1 7 7 C 1.37881 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00528 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99608 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.53031 * 109.45852 * 175.00060 * 10 9 7 12 12 C 1.53192 * 109.31310 * 181.38124 * 11 10 9 13 13 N 1.46920 * 108.89365 * 305.29643 * 12 11 10 14 14 C 1.34782 * 120.62999 * 233.67548 * 13 12 11 15 15 O 1.21588 * 119.99860 * 174.77474 * 14 13 12 16 16 N 1.34773 * 119.99805 * 354.77405 * 14 13 12 17 17 C 1.46503 * 120.00018 * 184.97803 * 16 14 13 18 18 C 1.53000 * 109.47236 * 180.02562 * 17 16 14 19 19 N 1.46901 * 109.47120 * 180.02562 * 18 17 16 20 20 C 1.46958 * 110.99679 * 46.20250 * 19 18 17 21 21 C 1.53060 * 109.36179 * 183.18942 * 20 19 18 22 22 N 1.46960 * 109.35871 * 301.59698 * 21 20 19 23 23 C 1.46958 * 110.88326 * 59.32586 * 22 21 20 24 24 C 1.46957 * 111.00075 * 170.00161 * 19 18 17 25 25 C 1.47201 * 118.55840 * 53.53732 * 13 12 11 26 26 C 1.53041 * 109.45679 * 295.06695 * 10 9 7 27 27 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46835 * 60.00242 * 9 7 2 29 29 H 1.09002 * 109.47306 * 300.00377 * 9 7 2 30 30 H 1.08995 * 109.45924 * 55.02399 * 10 9 7 31 31 H 1.09008 * 109.50250 * 61.43112 * 11 10 9 32 32 H 1.09004 * 109.52800 * 301.35404 * 11 10 9 33 33 H 1.09008 * 109.58273 * 65.15364 * 12 11 10 34 34 H 1.09004 * 109.58483 * 185.43268 * 12 11 10 35 35 H 0.97009 * 120.00436 * 4.98438 * 16 14 13 36 36 H 1.08997 * 109.47393 * 300.00233 * 17 16 14 37 37 H 1.09000 * 109.46681 * 60.00213 * 17 16 14 38 38 H 1.08997 * 109.47038 * 300.00351 * 18 17 16 39 39 H 1.09000 * 109.47193 * 60.00426 * 18 17 16 40 40 H 1.08993 * 109.49362 * 303.15298 * 20 19 18 41 41 H 1.08995 * 109.48816 * 63.22442 * 20 19 18 42 42 H 1.08999 * 109.48741 * 181.63317 * 21 20 19 43 43 H 1.08999 * 109.50756 * 61.57672 * 21 20 19 44 44 H 1.00903 * 110.99280 * 183.19061 * 22 21 20 45 45 H 1.08992 * 109.48889 * 180.70640 * 23 22 21 46 46 H 1.08999 * 109.50405 * 60.64942 * 23 22 21 47 47 H 1.09000 * 109.48602 * 296.77936 * 24 19 18 48 48 H 1.08999 * 109.48806 * 56.84697 * 24 19 18 49 49 H 1.09000 * 109.53945 * 186.66968 * 25 13 12 50 50 H 1.09004 * 109.67937 * 66.36696 * 25 13 12 51 51 H 1.08997 * 109.50104 * 298.56934 * 26 10 9 52 52 H 1.09006 * 109.49750 * 58.66821 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5468 -2.6381 -0.1242 12 6 6.0509 -4.0843 -0.1587 13 7 5.5446 -4.7929 1.0246 14 6 6.3896 -5.4422 1.8499 15 8 5.9719 -5.9439 2.8756 16 7 7.6975 -5.5351 1.5382 17 6 8.5956 -6.3323 2.3773 18 6 10.0143 -6.2710 1.8076 19 7 10.9147 -7.0709 2.6487 20 6 10.3205 -8.3781 2.9614 21 6 11.2519 -9.1470 3.9017 22 7 12.5652 -9.3080 3.2622 23 6 13.1594 -8.0008 2.9495 24 6 12.2281 -7.2320 2.0093 25 6 4.0968 -4.7753 1.2894 26 6 3.6146 -3.3213 1.3078 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8753 -0.6804 -0.8888 30 1 3.5875 -3.1751 -0.8414 31 1 5.9826 -2.1213 0.7310 32 1 5.8374 -2.1294 -1.0434 33 1 5.6889 -4.5759 -1.0617 34 1 7.1409 -4.0916 -0.1505 35 1 8.0443 -5.0741 0.7583 36 1 8.5944 -5.9336 3.3918 37 1 8.2545 -7.3674 2.3933 38 1 10.0158 -6.6694 0.7930 39 1 10.3552 -5.2358 1.7919 40 1 9.3549 -8.2323 3.4453 41 1 10.1843 -8.9452 2.0406 42 1 10.8269 -10.1285 4.1119 43 1 11.3665 -8.5931 4.8335 44 1 13.1836 -9.8574 3.8399 45 1 14.1251 -8.1467 2.4656 46 1 13.2959 -7.4335 3.8701 47 1 12.1134 -7.7861 1.0777 48 1 12.6530 -6.2505 1.7991 49 1 3.8972 -5.2387 2.2556 50 1 3.5736 -5.3239 0.5062 51 1 4.0684 -2.7981 2.1494 52 1 2.5293 -3.2992 1.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567350534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:25 Heat of formation + Delta-G solvation = -46.189925 kcal Electronic energy + Delta-G solvation = -27817.156405 eV Core-core repulsion = 24043.166144 eV Total energy + Delta-G solvation = -3773.990261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49083 -40.13523 -38.89758 -36.71340 -35.71634 -34.89430 -33.97494 -32.08198 -31.86109 -30.63668 -29.51837 -26.66868 -25.95439 -24.51780 -24.13673 -23.30613 -22.64439 -21.41681 -20.79335 -20.47316 -19.20376 -18.69250 -17.98759 -17.25448 -16.92497 -16.36439 -16.19838 -15.89393 -15.70852 -15.60500 -15.38685 -15.35777 -15.08043 -14.92582 -14.62237 -14.52007 -14.36258 -14.17127 -14.00440 -13.45410 -13.16803 -13.07704 -12.90369 -12.80013 -12.52749 -12.37374 -12.24013 -12.15756 -12.01051 -11.78789 -11.70615 -11.67490 -11.43038 -11.25779 -11.10710 -10.87790 -10.70462 -10.25743 -9.56526 -9.46183 -9.30872 -8.24742 -6.26656 1.35678 1.38556 1.49426 1.56776 2.09807 2.38413 2.69696 3.10771 3.11935 3.27419 3.69813 3.90031 3.91969 3.98729 4.03777 4.06886 4.14870 4.21553 4.32411 4.36926 4.41471 4.43099 4.46106 4.52299 4.57643 4.66129 4.78308 4.82567 4.84446 4.88267 4.89709 4.90408 4.96351 5.00303 5.08098 5.08486 5.20426 5.25063 5.32254 5.42529 5.43592 5.60724 5.73613 5.75828 5.86713 5.93892 5.97202 6.07664 6.35325 6.44829 6.81412 6.94500 7.37053 7.51757 8.91780 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.001951 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.194133 B =14347.282649 C =14829.650816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.249 1.249 7 C -0.518 4.518 8 H 0.037 0.963 9 C -0.007 4.007 10 C -0.070 4.070 11 C -0.125 4.125 12 C 0.115 3.885 13 N -0.624 5.624 14 C 0.704 3.296 15 O -0.638 6.638 16 N -0.732 5.732 17 C 0.141 3.859 18 C 0.056 3.944 19 N -0.545 5.545 20 C 0.047 3.953 21 C 0.060 3.940 22 N -0.700 5.700 23 C 0.058 3.942 24 C 0.056 3.944 25 C 0.137 3.863 26 C -0.112 4.112 27 H 0.263 0.737 28 H 0.010 0.990 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.410 0.590 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.035 0.965 44 H 0.354 0.646 45 H 0.095 0.905 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.045 0.955 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.433 -16.082 1.415 34.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.556 4.556 8 H 0.055 0.945 9 C -0.045 4.045 10 C -0.088 4.088 11 C -0.164 4.164 12 C -0.007 4.007 13 N -0.361 5.361 14 C 0.405 3.595 15 O -0.520 6.520 16 N -0.392 5.392 17 C 0.016 3.984 18 C -0.072 4.072 19 N -0.270 5.270 20 C -0.081 4.081 21 C -0.070 4.070 22 N -0.333 5.333 23 C -0.071 4.071 24 C -0.072 4.072 25 C 0.014 3.986 26 C -0.151 4.151 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.249 0.751 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.172 0.828 45 H 0.113 0.887 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.111 0.889 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.064 0.936 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 29.831 -16.196 1.948 34.000 hybrid contribution -0.487 1.024 0.057 1.136 sum 29.344 -15.172 2.005 33.095 Atomic orbital electron populations 1.70078 1.08252 1.27829 1.53365 1.26006 0.95546 1.03405 0.94682 0.85704 0.79407 0.78669 0.79106 1.19011 1.21634 1.17293 1.21506 0.92103 0.92934 1.49061 0.94462 1.19592 0.93906 0.94821 0.96143 1.20920 0.95145 0.96025 0.96725 1.21984 0.94755 0.96560 1.03066 1.21847 0.99724 0.91747 0.87385 1.47420 1.06843 1.54558 1.27253 1.15961 0.81754 0.79260 0.82542 1.90871 1.77697 1.55774 1.27628 1.44995 1.06036 1.55408 1.32720 1.21210 0.88296 0.94750 0.94102 1.22172 0.90095 0.99949 0.95031 1.62189 1.03646 1.16116 1.45088 1.22311 0.98000 0.88919 0.98910 1.21981 0.90004 0.99999 0.95026 1.60529 1.05197 1.17086 1.50463 1.22026 0.97567 0.89032 0.98488 1.22242 0.88649 1.00655 0.95660 1.21447 0.78738 0.96558 1.01888 1.21765 1.00607 0.94759 0.97951 0.92809 0.97129 0.96002 0.92029 0.92422 0.88895 0.89650 0.87765 0.75086 0.92626 0.92318 0.92915 0.88653 0.90157 0.94464 0.89356 0.94690 0.82754 0.88675 0.94641 0.94282 0.88880 0.90892 0.90664 0.93634 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 2 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 3 Si 0.95 44.24 27.47 68.60 1.88 46.12 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.52 -29.11 8.94 25.60 0.23 -28.89 16 8 H 0.04 2.30 7.30 -2.91 -0.02 2.28 16 9 C -0.01 -0.33 3.52 29.85 0.10 -0.22 16 10 C -0.07 -2.48 2.10 -10.77 -0.02 -2.50 16 11 C -0.13 -3.20 5.36 30.67 0.16 -3.04 16 12 C 0.12 2.28 6.38 86.36 0.55 2.84 16 13 N -0.62 -16.91 2.98 -836.18 -2.50 -19.40 16 14 C 0.70 20.38 8.30 179.05 1.49 21.87 16 15 O -0.64 -24.26 15.79 -3.99 -0.06 -24.32 16 16 N -0.73 -14.41 5.46 -478.53 -2.62 -17.03 16 17 C 0.14 2.59 4.94 86.38 0.43 3.02 16 18 C 0.06 0.69 5.39 86.30 0.47 1.16 16 19 N -0.54 -7.61 4.86 -895.71 -4.35 -11.97 16 20 C 0.05 0.69 4.93 86.31 0.43 1.11 16 21 C 0.06 0.75 6.72 86.31 0.58 1.33 16 22 N -0.70 -7.86 6.90 -513.43 -3.54 -11.40 16 23 C 0.06 0.59 6.72 86.31 0.58 1.17 16 24 C 0.06 0.62 5.58 86.31 0.48 1.10 16 25 C 0.14 4.32 6.45 86.31 0.56 4.88 16 26 C -0.11 -4.14 5.19 30.67 0.16 -3.99 16 27 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 29 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.10 1.31 5.64 -2.38 -0.01 1.30 16 35 H 0.41 5.38 5.96 -92.70 -0.55 4.83 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.20 6.26 -2.39 -0.01 1.18 16 38 H 0.05 0.57 8.08 -2.39 -0.02 0.55 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.30 5.99 -2.39 -0.01 1.28 16 41 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.35 2.75 8.90 -89.69 -0.80 1.95 16 45 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 2.52 7.01 -2.39 -0.02 2.51 16 50 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.06 2.47 6.91 -2.38 -0.02 2.45 16 Total: -1.00 -74.73 391.44 -4.74 -79.46 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.50 Total: 17.94 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 6.65 Total: 0.29 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -12.71 Total: -119.49 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.06 Total: -24.32 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -74.73 -4.74 -79.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567350534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.275 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds