Wall clock time and date at job start Fri Apr 10 2020 18:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.46824 * 2 1 4 4 N 1.40093 * 126.03565 * 270.15359 * 3 2 1 5 5 C 1.30839 * 108.19983 * 180.23592 * 4 3 2 6 6 C 1.50704 * 125.89386 * 179.81269 * 5 4 3 7 7 C 1.39865 * 108.20800 * 359.78210 * 5 4 3 8 8 C 1.50698 * 126.04312 * 180.02562 * 7 5 4 9 9 N 1.46897 * 109.47260 * 269.97403 * 8 7 5 10 10 C 1.46895 * 111.00042 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47265 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.47100 * 59.99904 * 11 10 9 13 13 O 1.42902 * 109.47058 * 299.99747 * 11 10 9 14 14 C 1.53001 * 109.47191 * 179.97438 * 11 10 9 15 15 N 1.46902 * 109.46908 * 180.46208 * 14 11 10 16 16 C 1.46898 * 110.99843 * 199.85189 * 15 14 11 17 17 C 1.46897 * 111.00185 * 75.89740 * 15 14 11 18 18 C 1.50701 * 109.47480 * 190.00079 * 17 15 14 19 19 H 1.08000 * 119.99613 * 359.97438 * 18 17 15 20 20 C 1.37874 * 120.00265 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00144 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46716 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47204 * 119.99534 * 22 20 18 25 25 H 1.48499 * 109.47179 * 239.99751 * 22 20 18 26 26 C 1.34942 * 126.04096 * 90.00113 * 3 2 1 27 27 C 1.50703 * 126.12340 * 0.03856 * 26 3 2 28 28 H 1.09001 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46974 * 300.00039 * 1 2 3 30 30 H 1.08996 * 109.47442 * 59.99968 * 1 2 3 31 31 H 1.09003 * 109.46974 * 239.99961 * 2 1 3 32 32 H 1.08994 * 109.46953 * 119.99844 * 2 1 3 33 33 H 1.08992 * 109.47358 * 269.95853 * 6 5 4 34 34 H 1.09005 * 109.46770 * 29.96228 * 6 5 4 35 35 H 1.08999 * 109.47011 * 149.95778 * 6 5 4 36 36 H 1.09003 * 109.46953 * 29.97405 * 8 7 5 37 37 H 1.08999 * 109.47099 * 149.96956 * 8 7 5 38 38 H 1.00893 * 110.99988 * 303.95050 * 9 8 7 39 39 H 1.09002 * 109.47134 * 300.00205 * 10 9 8 40 40 H 1.09000 * 109.47604 * 60.00099 * 10 9 8 41 41 H 0.96700 * 114.00258 * 300.00553 * 13 11 10 42 42 H 1.09002 * 109.47295 * 300.45735 * 14 11 10 43 43 H 1.08995 * 109.47063 * 60.46318 * 14 11 10 44 44 H 1.08995 * 109.47614 * 64.81884 * 16 15 14 45 45 H 1.09001 * 109.47409 * 184.82505 * 16 15 14 46 46 H 1.09002 * 109.47119 * 304.81876 * 16 15 14 47 47 H 1.09000 * 109.47126 * 310.00347 * 17 15 14 48 48 H 1.09004 * 109.47215 * 69.99784 * 17 15 14 49 49 H 0.97001 * 120.00504 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.46857 * 269.68662 * 27 26 3 51 51 H 1.08999 * 109.47427 * 149.68594 * 27 26 3 52 52 H 1.09001 * 109.47412 * 29.68203 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2901 2.1592 -1.1329 5 6 2.7111 3.3315 -0.7321 6 6 3.1193 4.4758 -1.6237 7 6 2.7161 3.3393 0.6665 8 6 3.1300 4.4915 1.5452 9 7 4.5683 4.3987 1.8292 10 6 5.0086 5.5085 2.6849 11 6 6.5084 5.3782 2.9577 12 1 7.0533 5.4086 2.0142 13 8 6.7666 4.1370 3.6170 14 6 6.9672 6.5345 3.8485 15 7 8.4094 6.4155 4.1012 16 6 8.8012 7.1869 5.2884 17 6 9.1859 6.8290 2.9248 18 6 10.6346 6.4660 3.1262 19 1 10.9473 5.9773 4.0371 20 6 11.5611 6.7585 2.1479 21 7 11.1805 7.3540 1.0388 22 14 13.3569 6.3092 2.3978 23 1 13.5236 5.6531 3.7195 24 1 13.7882 5.3779 1.3245 25 1 14.1866 7.5398 2.3483 26 6 2.2829 2.1297 1.0911 27 6 2.1299 1.6943 2.5257 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.1852 4.4055 -1.8401 34 1 2.5555 4.4295 -2.5555 35 1 2.9123 5.4203 -1.1204 36 1 2.9204 5.4314 1.0346 37 1 2.5717 4.4538 2.4806 38 1 4.7981 3.5084 2.2445 39 1 4.8120 6.4553 2.1819 40 1 4.4635 5.4784 3.6284 41 1 6.3128 4.0404 4.4655 42 1 6.7629 7.4814 3.3487 43 1 6.4283 6.4997 4.7952 44 1 8.3279 6.7593 6.1721 45 1 9.8845 7.1517 5.4034 46 1 8.4819 8.2224 5.1704 47 1 8.8035 6.3203 2.0399 48 1 9.0967 7.9071 2.7911 49 1 11.8322 7.5596 0.3503 50 1 1.1257 1.9363 2.8737 51 1 2.8632 2.2130 3.1432 52 1 2.2899 0.6185 2.5980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573595372.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:37 Heat of formation + Delta-G solvation = 20.484922 kcal Electronic energy + Delta-G solvation = -27768.878796 eV Core-core repulsion = 23997.779773 eV Total energy + Delta-G solvation = -3771.099023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50997 -38.17508 -36.14420 -35.31168 -34.62870 -32.59956 -32.42178 -31.21589 -29.75681 -28.11699 -27.37869 -27.19467 -25.80193 -24.27125 -23.19985 -22.64168 -21.39596 -20.02859 -19.73381 -19.45000 -16.97781 -16.49283 -16.07541 -15.79333 -15.61194 -15.02910 -14.77621 -14.70876 -14.46270 -14.25516 -13.96576 -13.65844 -13.48797 -13.43832 -13.37308 -13.14581 -12.92391 -12.77129 -12.46182 -12.32253 -12.13613 -12.00040 -11.91939 -11.76455 -11.65548 -11.50337 -11.35572 -11.10576 -10.85596 -10.64024 -10.57915 -10.50526 -10.29123 -9.70583 -9.55508 -9.12607 -9.06458 -8.51251 -8.36817 -8.18689 -7.14462 -5.95812 -3.96075 1.72441 2.31972 2.63938 3.36069 3.43271 3.48433 4.17984 4.30834 4.39665 4.50059 4.58978 4.68357 4.75814 4.84989 4.87009 4.99027 5.08987 5.10875 5.16120 5.23173 5.30267 5.34807 5.39448 5.45948 5.46814 5.50267 5.59658 5.64702 5.66809 5.74235 5.79135 5.88140 5.94217 6.06118 6.07778 6.09100 6.17305 6.36267 6.61980 6.65170 6.76458 6.91659 7.11056 7.35694 7.38264 7.52029 7.69337 7.86720 8.12651 8.18505 8.27900 8.62348 9.11346 9.67472 11.15296 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.002284 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.195599 B =12254.785655 C =12812.228706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.372 5.372 4 N -0.302 5.302 5 C 0.097 3.903 6 C -0.071 4.071 7 C -0.230 4.230 8 C 0.140 3.860 9 N -0.677 5.677 10 C 0.030 3.970 11 C 0.117 3.883 12 H 0.110 0.890 13 O -0.540 6.540 14 C 0.026 3.974 15 N -0.531 5.531 16 C 0.038 3.962 17 C 0.192 3.808 18 C -0.503 4.503 19 H 0.063 0.937 20 C 0.053 3.947 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.286 1.286 26 C 0.089 3.911 27 C -0.091 4.091 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.346 0.654 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.357 0.643 42 H 0.033 0.967 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.076 0.924 46 H 0.007 0.993 47 H 0.032 0.968 48 H -0.012 1.012 49 H 0.260 0.740 50 H 0.077 0.923 51 H 0.083 0.917 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.548 -10.520 2.269 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.154 5.154 4 N -0.124 5.124 5 C -0.069 4.069 6 C -0.130 4.130 7 C -0.242 4.242 8 C 0.011 3.989 9 N -0.309 5.309 10 C -0.100 4.100 11 C 0.057 3.943 12 H 0.128 0.872 13 O -0.343 6.343 14 C -0.103 4.103 15 N -0.255 5.255 16 C -0.111 4.111 17 C 0.067 3.933 18 C -0.542 4.542 19 H 0.081 0.919 20 C -0.147 4.147 21 N -0.539 5.539 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.212 1.212 26 C -0.039 4.039 27 C -0.150 4.150 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.165 0.835 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.202 0.798 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.025 0.975 47 H 0.050 0.950 48 H 0.006 0.994 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.101 0.899 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.126 -11.627 0.063 26.782 hybrid contribution 0.210 1.002 1.822 2.090 sum -23.916 -10.625 1.886 26.238 Atomic orbital electron populations 1.22180 0.94456 1.02914 1.03144 1.21605 0.95029 0.78271 1.04302 1.48431 1.51985 1.11683 1.03300 1.77323 1.23740 1.03843 1.07494 1.22186 0.97189 0.94050 0.93518 1.20169 1.02275 0.93273 0.97247 1.19556 1.14396 0.96546 0.93681 1.20088 0.87809 0.95474 0.95571 1.60347 1.14645 1.06062 1.49850 1.22676 0.96925 0.95619 0.94805 1.21973 0.91993 0.83667 0.96672 0.87195 1.86711 1.73912 1.36933 1.36698 1.22666 0.92190 0.97076 0.98414 1.62026 1.01343 1.55735 1.06396 1.22222 1.02408 0.93924 0.92538 1.19774 0.92864 0.93465 0.87194 1.21191 0.91858 1.37840 1.03274 0.91866 1.24989 0.99120 0.95438 0.95192 1.69966 1.34282 1.42304 1.07319 0.86458 0.84861 0.77971 0.78224 1.19698 1.21006 1.21231 1.20822 1.00466 0.92024 0.90616 1.20447 1.03273 1.02001 0.89263 0.90593 0.92137 0.91652 0.88784 0.89116 0.89918 0.91442 0.90511 0.90544 0.95356 0.83500 0.90367 0.95632 0.79842 0.94912 0.92443 0.93863 0.90496 0.97455 0.94965 0.99432 0.93055 0.90399 0.89855 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.13 0.93 6.96 -4.04 -0.03 0.90 16 3 N -0.37 -4.12 3.61 -57.14 -0.21 -4.33 16 4 N -0.30 -4.14 12.58 33.67 0.42 -3.72 16 5 C 0.10 1.27 7.22 -82.40 -0.59 0.68 16 6 C -0.07 -0.78 10.26 36.01 0.37 -0.41 16 7 C -0.23 -2.76 5.61 -105.06 -0.59 -3.35 16 8 C 0.14 1.53 5.59 -4.98 -0.03 1.50 16 9 N -0.68 -8.61 6.49 -115.06 -0.75 -9.35 16 10 C 0.03 0.38 5.39 -3.83 -0.02 0.36 16 11 C 0.12 1.91 3.30 -26.73 -0.09 1.82 16 12 H 0.11 2.23 6.78 -51.93 -0.35 1.88 16 13 O -0.54 -8.93 12.55 -35.23 -0.44 -9.38 16 14 C 0.03 0.46 4.66 -3.82 -0.02 0.44 16 15 N -0.53 -11.59 4.56 -244.37 -1.11 -12.71 16 16 C 0.04 0.74 9.37 60.06 0.56 1.30 16 17 C 0.19 5.11 4.55 -4.98 -0.02 5.08 16 18 C -0.50 -14.52 8.39 -34.44 -0.29 -14.80 16 19 H 0.06 1.82 7.17 -52.49 -0.38 1.44 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 22 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 C 0.09 0.94 6.93 -82.26 -0.57 0.37 16 27 C -0.09 -0.63 9.73 36.01 0.35 -0.28 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.46 7.04 -51.93 -0.37 0.10 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.74 7.25 -51.93 -0.38 0.37 16 36 H 0.08 0.82 7.26 -51.93 -0.38 0.44 16 37 H 0.03 0.27 7.78 -51.93 -0.40 -0.13 16 38 H 0.35 4.49 8.11 -39.30 -0.32 4.17 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.36 4.39 9.05 45.56 0.41 4.80 16 42 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 43 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.64 6.66 -51.93 -0.35 1.29 16 46 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 47 H 0.03 0.92 6.63 -51.93 -0.34 0.58 16 48 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.08 0.57 7.78 -51.93 -0.40 0.17 16 52 H 0.07 0.39 7.07 -51.93 -0.37 0.02 16 LS Contribution 418.07 15.07 6.30 6.30 Total: -1.00 -34.68 418.07 -9.41 -44.09 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.65 Total: 3.98 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.68 Total: -5.52 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.91 Total: -56.65 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.44 Total: -9.38 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.68 -9.41 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573595372.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.572 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds