Wall clock time and date at job start Fri Apr 10 2020 18:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47112 * 2 1 4 4 H 1.08995 * 109.62968 * 297.27336 * 3 2 1 5 5 C 1.53235 * 109.62652 * 57.66198 * 3 2 1 6 6 N 1.46902 * 109.33798 * 173.53921 * 5 3 2 7 7 C 1.46896 * 111.00125 * 172.74822 * 6 5 3 8 8 C 1.46908 * 111.26794 * 296.89438 * 6 5 3 9 9 C 1.53233 * 109.33901 * 63.10322 * 8 6 5 10 10 N 1.47079 * 109.62431 * 176.88929 * 3 2 1 11 11 C 1.34777 * 120.88741 * 9.10596 * 10 3 2 12 12 O 1.21585 * 119.99634 * 4.86002 * 11 10 3 13 13 N 1.34781 * 120.00143 * 184.85912 * 11 10 3 14 14 C 1.46501 * 119.99727 * 175.07627 * 13 11 10 15 15 C 1.53043 * 109.45583 * 275.02645 * 14 13 11 16 16 C 1.53195 * 109.30738 * 178.60267 * 15 14 13 17 17 N 1.46925 * 108.76591 * 54.65769 * 16 15 14 18 18 C 1.36939 * 120.63175 * 126.36091 * 17 16 15 19 19 H 1.08001 * 120.00132 * 325.21811 * 18 17 16 20 20 C 1.38808 * 120.00154 * 145.21434 * 18 17 16 21 21 N 1.31630 * 120.00024 * 359.64038 * 20 18 17 22 22 Si 1.86798 * 120.00102 * 179.63583 * 20 18 17 23 23 H 1.48493 * 109.47216 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46942 * 120.00551 * 22 20 18 25 25 H 1.48494 * 109.47140 * 239.99906 * 22 20 18 26 26 C 1.46924 * 118.73781 * 306.37600 * 17 16 15 27 27 C 1.53036 * 109.46096 * 154.97212 * 14 13 11 28 28 H 1.09003 * 109.46716 * 64.54734 * 1 2 3 29 29 H 1.08995 * 109.47403 * 184.54042 * 1 2 3 30 30 H 1.08997 * 109.47561 * 304.55054 * 1 2 3 31 31 H 1.09003 * 109.47660 * 239.99994 * 2 1 3 32 32 H 1.09001 * 109.47011 * 120.00012 * 2 1 3 33 33 H 1.08990 * 109.49706 * 293.49717 * 5 3 2 34 34 H 1.09002 * 109.49482 * 53.58511 * 5 3 2 35 35 H 1.09001 * 109.47263 * 60.00079 * 7 6 5 36 36 H 1.09000 * 109.47103 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.46794 * 300.00145 * 7 6 5 38 38 H 1.08997 * 109.48817 * 183.06372 * 8 6 5 39 39 H 1.08993 * 109.49337 * 303.11837 * 8 6 5 40 40 H 1.09014 * 109.63038 * 65.88127 * 9 8 6 41 41 H 1.08998 * 109.62938 * 186.26117 * 9 8 6 42 42 H 0.96996 * 120.00253 * 355.07665 * 13 11 10 43 43 H 1.09000 * 109.45897 * 34.99872 * 14 13 11 44 44 H 1.08994 * 109.49833 * 298.56439 * 15 14 13 45 45 H 1.08997 * 109.50025 * 58.66496 * 15 14 13 46 46 H 1.08999 * 109.59992 * 294.86491 * 16 15 14 47 47 H 1.09007 * 109.70009 * 174.50129 * 16 15 14 48 48 H 0.96992 * 119.99907 * 179.97438 * 21 20 18 49 49 H 1.08995 * 109.58880 * 293.82826 * 26 17 16 50 50 H 1.08998 * 109.70237 * 173.46266 * 26 17 16 51 51 H 1.08996 * 109.49698 * 301.33744 * 27 14 13 52 52 H 1.09010 * 109.49777 * 61.39885 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7185 1.9446 -0.9125 5 6 1.4836 2.1852 1.2195 6 7 2.0970 3.5176 1.2992 7 6 1.4665 4.3254 2.3517 8 6 3.5486 3.4246 1.5055 9 6 4.1895 2.7327 0.2978 10 7 3.5088 1.4472 0.0752 11 6 4.2117 0.3042 -0.0514 12 8 3.6395 -0.7349 -0.3182 13 7 5.5488 0.3130 0.1177 14 6 6.2993 -0.9448 0.0871 15 6 6.2744 -1.5871 1.4760 16 6 7.0303 -2.9189 1.4318 17 7 8.3796 -2.6792 0.9021 18 6 9.4852 -3.0938 1.5957 19 1 9.4850 -3.0718 2.6754 20 6 10.6062 -3.5424 0.9109 21 7 10.6039 -3.5760 -0.4050 22 14 12.1181 -4.0984 1.8567 23 1 11.8672 -3.9644 3.3141 24 1 12.4097 -5.5182 1.5335 25 1 13.2790 -3.2552 1.4742 26 6 8.5202 -1.9859 -0.3856 27 6 7.7474 -0.6648 -0.3212 28 1 -0.3633 0.4417 -0.9280 29 1 -0.3634 -1.0244 0.0813 30 1 -0.3634 0.5828 0.8464 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4030 2.2876 1.1212 34 1 1.7154 1.6234 2.1244 35 1 1.5871 3.8270 3.3135 36 1 1.9392 5.3068 2.3887 37 1 0.4049 4.4417 2.1334 38 1 3.9653 4.4258 1.6146 39 1 3.7515 2.8460 2.4066 40 1 4.0775 3.3607 -0.5862 41 1 5.2480 2.5612 0.4932 42 1 6.0142 1.1521 0.2596 43 1 5.8431 -1.6224 -0.6346 44 1 6.7529 -0.9207 2.1936 45 1 5.2418 -1.7649 1.7762 46 1 6.5020 -3.6178 0.7833 47 1 7.1009 -3.3349 2.4369 48 1 11.3873 -3.8891 -0.8835 49 1 8.1134 -2.6087 -1.1822 50 1 9.5733 -1.7839 -0.5812 51 1 7.7632 -0.1859 -1.3001 52 1 8.2117 -0.0066 0.4134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590925298.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:43 Heat of formation + Delta-G solvation = 17.678509 kcal Electronic energy + Delta-G solvation = -29392.364252 eV Core-core repulsion = 25621.143534 eV Total energy + Delta-G solvation = -3771.220718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74849 -38.59853 -37.28020 -35.18965 -34.64287 -33.73330 -31.87957 -30.06206 -29.84996 -29.35114 -28.21429 -25.31845 -24.59344 -24.39523 -22.28114 -22.10856 -21.59506 -20.94108 -19.70854 -19.06878 -17.74014 -16.72301 -16.36844 -15.88286 -15.47829 -15.29320 -15.06877 -14.90944 -14.63438 -14.16418 -13.92441 -13.52616 -13.49895 -13.44686 -13.29603 -12.91131 -12.62853 -12.57941 -12.39054 -12.28192 -12.19537 -11.89882 -11.64307 -11.44155 -11.35678 -10.95288 -10.93899 -10.84692 -10.79358 -10.68982 -10.37525 -10.21739 -9.98498 -9.80414 -9.54819 -9.08133 -8.93182 -8.66045 -8.47609 -8.34713 -6.55509 -5.78268 -3.30405 2.66260 3.35573 3.36350 3.43964 3.45826 3.56711 3.95521 4.48350 4.55921 4.61544 4.70819 4.90969 4.93330 5.03573 5.13379 5.14623 5.24873 5.35998 5.38296 5.39813 5.44709 5.47553 5.49452 5.54451 5.56648 5.66757 5.70472 5.74398 5.95312 6.03244 6.12798 6.28882 6.30461 6.34322 6.41985 6.52716 6.60052 6.61357 6.63455 6.66904 6.78122 6.84387 6.97989 7.05323 7.14139 7.40938 7.75492 7.79378 8.13721 8.52284 8.81849 9.24948 9.84122 10.44255 11.29085 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.002704 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.610269 B =10353.733560 C =10838.422980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 C 0.172 3.828 4 H 0.074 0.926 5 C 0.043 3.957 6 N -0.543 5.543 7 C 0.025 3.975 8 C 0.040 3.960 9 C 0.117 3.883 10 N -0.634 5.634 11 C 0.706 3.294 12 O -0.581 6.581 13 N -0.741 5.741 14 C 0.168 3.832 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.594 5.594 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.006 3.994 21 N -0.906 5.906 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.174 3.826 27 C -0.147 4.147 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.025 0.975 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.388 0.612 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.020 0.980 47 H 0.054 0.946 48 H 0.254 0.746 49 H 0.019 0.981 50 H 0.099 0.901 51 H 0.052 0.948 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.694 16.676 2.233 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.154 4.154 3 C 0.068 3.932 4 H 0.092 0.908 5 C -0.086 4.086 6 N -0.268 5.268 7 C -0.123 4.123 8 C -0.089 4.089 9 C -0.007 4.007 10 N -0.373 5.373 11 C 0.408 3.592 12 O -0.460 6.460 13 N -0.396 5.396 14 C 0.064 3.936 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.317 5.317 18 C -0.382 4.382 19 H 0.081 0.919 20 C -0.192 4.192 21 N -0.550 5.550 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.047 3.953 27 C -0.187 4.187 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.223 0.777 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.038 0.962 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.037 0.963 50 H 0.117 0.883 51 H 0.071 0.929 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.022 16.051 1.501 24.180 hybrid contribution 1.173 -0.060 1.411 1.836 sum -16.849 15.991 2.913 23.412 Atomic orbital electron populations 1.21989 0.96950 1.01677 1.01088 1.22066 0.93450 0.93921 1.05940 1.21148 0.77771 0.97147 0.97142 0.90823 1.22690 0.99491 0.88456 0.97957 1.61941 1.03472 1.14791 1.46552 1.22363 1.00089 0.97613 0.92218 1.22501 0.88319 1.00884 0.97201 1.21676 0.96081 0.84857 0.98107 1.47432 1.06428 1.05972 1.77476 1.15976 0.81908 0.83312 0.77964 1.90911 1.68181 1.31194 1.55680 1.45832 1.05519 1.10912 1.77370 1.20910 0.91403 0.83495 0.97806 1.22384 0.99482 0.99582 0.96383 1.20889 0.86690 0.92615 0.97689 1.44034 1.00154 1.65541 1.21981 1.19208 0.92323 1.36308 0.90314 0.91871 1.25307 0.99662 0.98631 0.95614 1.69912 1.29296 1.50236 1.05557 0.86188 0.82736 0.78319 0.79353 1.20265 1.21528 1.21657 1.20850 1.00316 0.87100 0.87019 1.22575 0.93967 1.02470 0.99682 0.92986 0.92543 0.93286 0.88070 0.91382 0.89402 0.94303 0.95630 0.91228 0.91222 0.89524 0.94201 0.90681 0.89949 0.77701 0.89986 0.92696 0.93007 0.96173 0.92719 0.93563 0.96282 0.88308 0.92905 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.64 37.16 0.36 -1.14 16 2 C -0.12 -1.43 3.93 -26.73 -0.11 -1.53 16 3 C 0.17 1.91 3.20 -67.49 -0.22 1.70 16 4 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 5 C 0.04 0.40 4.29 -3.70 -0.02 0.38 16 6 N -0.54 -4.70 4.88 -242.62 -1.18 -5.89 16 7 C 0.03 0.17 9.58 60.06 0.58 0.75 16 8 C 0.04 0.33 5.62 -3.70 -0.02 0.31 16 9 C 0.12 1.07 6.58 -3.57 -0.02 1.04 16 10 N -0.63 -7.71 3.02 -170.55 -0.52 -8.23 16 11 C 0.71 10.90 8.10 -86.91 -0.70 10.19 16 12 O -0.58 -10.75 11.65 5.29 0.06 -10.69 16 13 N -0.74 -10.95 4.99 -58.63 -0.29 -11.25 16 14 C 0.17 3.00 2.46 -67.89 -0.17 2.83 16 15 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 16 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 17 N -0.59 -14.98 2.99 -172.32 -0.52 -15.49 16 18 C -0.25 -6.89 9.56 -15.06 -0.14 -7.04 16 19 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 20 C 0.01 0.18 5.25 -17.43 -0.09 0.08 16 21 N -0.91 -26.02 10.77 55.49 0.60 -25.43 16 22 Si 0.90 21.56 29.55 -169.99 -5.02 16.53 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 C 0.17 4.12 5.24 -3.71 -0.02 4.10 16 27 C -0.15 -2.75 5.55 -26.61 -0.15 -2.89 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.40 6.30 -51.93 -0.33 0.07 16 31 H 0.10 1.52 6.22 -51.93 -0.32 1.20 16 32 H 0.07 0.99 7.31 -51.93 -0.38 0.61 16 33 H 0.09 0.71 6.65 -51.93 -0.35 0.36 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.08 0.67 5.66 -51.93 -0.29 0.38 16 42 H 0.39 4.77 6.11 -40.82 -0.25 4.52 16 43 H 0.08 1.67 7.51 -51.93 -0.39 1.28 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.10 2.61 6.03 -51.93 -0.31 2.30 16 51 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -30.81 386.32 -11.28 -42.09 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -9.34 Total: 3.24 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -0.90 Total: 9.28 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -1.91 Total: -66.27 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.06 Total: -10.69 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.81 -11.28 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590925298.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.770 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds