Wall clock time and date at job start Fri Apr 10 2020 18:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47465 * 2 1 4 4 C 1.53000 * 109.47360 * 183.61643 * 3 2 1 5 5 H 1.08991 * 109.62627 * 59.55000 * 4 3 2 6 6 C 1.53244 * 109.62470 * 299.16223 * 4 3 2 7 7 N 1.46903 * 109.33681 * 186.26342 * 6 4 3 8 8 C 1.46899 * 111.26848 * 63.11002 * 7 6 4 9 9 C 1.53245 * 109.33826 * 296.89402 * 8 7 6 10 10 N 1.47079 * 109.78883 * 180.02562 * 4 3 2 11 11 C 1.34773 * 120.88221 * 350.96545 * 10 4 3 12 12 O 1.21588 * 120.00078 * 5.41317 * 11 10 4 13 13 N 1.34780 * 120.00222 * 185.41051 * 11 10 4 14 14 C 1.46496 * 120.00317 * 174.85357 * 13 11 10 15 15 C 1.53034 * 109.46132 * 275.07331 * 14 13 11 16 16 C 1.53192 * 109.31116 * 178.61222 * 15 14 13 17 17 N 1.46925 * 108.77537 * 54.63440 * 16 15 14 18 18 C 1.36942 * 120.63245 * 126.36975 * 17 16 15 19 19 H 1.08003 * 119.99629 * 328.89717 * 18 17 16 20 20 C 1.38813 * 120.00025 * 148.89580 * 18 17 16 21 21 N 1.31621 * 120.00120 * 345.28395 * 20 18 17 22 22 Si 1.86798 * 119.99913 * 165.29078 * 20 18 17 23 23 H 1.48503 * 109.47358 * 59.99657 * 22 20 18 24 24 H 1.48495 * 109.47384 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46839 * 299.99927 * 22 20 18 26 26 C 1.46923 * 118.74153 * 306.38902 * 17 16 15 27 27 C 1.53035 * 109.46184 * 155.00196 * 14 13 11 28 28 H 1.09000 * 109.47051 * 300.00396 * 1 2 3 29 29 H 1.08996 * 109.46680 * 59.99638 * 1 2 3 30 30 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47051 * 239.99604 * 2 1 3 32 32 H 1.09000 * 109.47090 * 119.99740 * 2 1 3 33 33 H 1.09005 * 109.47208 * 63.61382 * 3 2 1 34 34 H 1.08998 * 109.47135 * 303.61752 * 3 2 1 35 35 H 1.09000 * 109.49203 * 66.30883 * 6 4 3 36 36 H 1.09000 * 109.51456 * 306.23634 * 6 4 3 37 37 H 1.00897 * 111.00277 * 298.95979 * 7 6 4 38 38 H 1.08996 * 109.49640 * 176.93286 * 8 7 6 39 39 H 1.08994 * 109.51885 * 56.86317 * 8 7 6 40 40 H 1.08998 * 109.62786 * 173.54215 * 9 8 7 41 41 H 1.08999 * 109.62737 * 294.12202 * 9 8 7 42 42 H 0.97004 * 119.99680 * 354.85922 * 13 11 10 43 43 H 1.09008 * 109.45806 * 35.03197 * 14 13 11 44 44 H 1.08998 * 109.50182 * 298.56038 * 15 14 13 45 45 H 1.09004 * 109.50190 * 58.66527 * 15 14 13 46 46 H 1.09001 * 109.59079 * 294.84819 * 16 15 14 47 47 H 1.09001 * 109.70559 * 174.49295 * 16 15 14 48 48 H 0.96995 * 119.99987 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.58845 * 293.82320 * 26 17 16 50 50 H 1.09001 * 109.70672 * 173.46284 * 26 17 16 51 51 H 1.09004 * 109.49983 * 301.34314 * 27 14 13 52 52 H 1.09001 * 109.49788 * 61.40211 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5674 1.4434 -0.0910 5 1 3.8799 0.9421 -1.0069 6 6 4.1557 0.7140 1.1216 7 7 5.6185 0.8477 1.1070 8 6 6.0265 2.2527 1.2389 9 6 5.5149 3.0452 0.0312 10 7 4.0654 2.8273 -0.0909 11 6 3.2161 3.8681 -0.1999 12 8 2.0156 3.6756 -0.2009 13 7 3.6976 5.1224 -0.3076 14 6 2.7810 6.2415 -0.5392 15 6 2.5060 6.3734 -2.0388 16 6 1.5204 7.5223 -2.2740 17 7 2.0554 8.7397 -1.6492 18 6 2.1952 9.8927 -2.3747 19 1 2.4074 9.8427 -3.4325 20 6 2.0642 11.1257 -1.7505 21 7 1.5282 11.2024 -0.5509 22 14 2.6486 12.6760 -2.6133 23 1 1.9094 12.8402 -3.8908 24 1 2.3975 13.8520 -1.7420 25 1 4.1030 12.5683 -2.8933 26 6 2.4380 8.6965 -0.2313 27 6 3.4133 7.5344 -0.0191 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7306 1.9373 0.9206 34 1 1.6248 1.9747 -0.8558 35 1 3.8865 -0.3413 1.0770 36 1 3.7594 1.1522 2.0376 37 1 6.0113 0.4337 0.2749 38 1 7.1141 2.3134 1.2795 39 1 5.6046 2.6702 2.1530 40 1 5.7145 4.1066 0.1785 41 1 6.0145 2.6978 -0.8731 42 1 4.6510 5.2840 -0.2320 43 1 1.8440 6.0582 -0.0131 44 1 3.4388 6.5814 -2.5629 45 1 2.0771 5.4439 -2.4133 46 1 0.5575 7.2751 -1.8269 47 1 1.3950 7.6858 -3.3443 48 1 1.4363 12.0640 -0.1149 49 1 1.5500 8.5450 0.3824 50 1 2.9197 9.6335 0.0481 51 1 3.6304 7.4312 1.0441 52 1 4.3379 7.7311 -0.5617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591351157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:49 Heat of formation + Delta-G solvation = -16.167219 kcal Electronic energy + Delta-G solvation = -29291.477447 eV Core-core repulsion = 25518.789068 eV Total energy + Delta-G solvation = -3772.688379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85690 -39.72995 -38.50594 -36.61284 -35.61579 -34.69814 -33.67712 -32.09884 -31.69556 -30.98970 -28.32578 -26.89540 -26.09529 -24.39154 -23.94259 -23.49829 -22.77643 -21.89189 -21.09294 -20.68680 -19.11276 -18.46510 -17.48032 -17.06892 -16.84697 -16.50709 -16.08229 -15.69482 -15.61843 -15.38898 -15.26169 -15.06193 -14.93975 -14.82657 -14.60162 -14.21438 -14.11211 -13.99307 -13.52265 -13.21850 -13.16252 -12.99735 -12.62892 -12.59372 -12.55408 -12.34810 -12.31635 -12.19748 -12.05550 -12.01769 -11.90595 -11.72232 -11.60410 -11.41195 -11.32967 -10.57221 -10.49011 -10.18040 -9.88884 -8.99126 -8.68365 -7.89177 -5.38846 1.48018 1.49373 1.56329 1.57182 2.15220 2.50697 2.86452 3.26423 3.28177 3.64209 3.79538 3.84873 3.91702 4.02692 4.04640 4.06977 4.18707 4.25559 4.28832 4.31718 4.36527 4.43539 4.58117 4.62639 4.66705 4.74776 4.80501 4.82833 4.90872 4.97850 4.99369 5.01879 5.04263 5.04753 5.09446 5.13512 5.26571 5.28500 5.42825 5.43619 5.46086 5.61325 5.63337 5.66826 5.73794 5.91085 5.93666 6.38885 6.45742 6.98308 7.13453 7.61239 7.81452 8.36507 9.17853 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.002777 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.840071 B =10081.685920 C =10960.476777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.094 4.094 4 C 0.127 3.873 5 H 0.080 0.920 6 C 0.056 3.944 7 N -0.684 5.684 8 C 0.048 3.952 9 C 0.069 3.931 10 N -0.630 5.630 11 C 0.699 3.301 12 O -0.616 6.616 13 N -0.730 5.730 14 C 0.182 3.818 15 C -0.120 4.120 16 C 0.146 3.854 17 N -0.608 5.608 18 C -0.268 4.268 19 H 0.066 0.934 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.971 3.029 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.183 3.817 27 C -0.127 4.127 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.353 0.647 38 H 0.113 0.887 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.403 0.597 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.005 0.995 47 H 0.057 0.943 48 H 0.251 0.749 49 H -0.007 1.007 50 H 0.060 0.940 51 H 0.074 0.926 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.382 -23.912 2.517 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.133 4.133 4 C 0.022 3.978 5 H 0.098 0.902 6 C -0.075 4.075 7 N -0.313 5.313 8 C -0.082 4.082 9 C -0.055 4.055 10 N -0.368 5.368 11 C 0.401 3.599 12 O -0.497 6.497 13 N -0.387 5.387 14 C 0.077 3.923 15 C -0.161 4.161 16 C 0.020 3.980 17 N -0.332 5.332 18 C -0.399 4.399 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.200 1.200 26 C 0.057 3.943 27 C -0.167 4.167 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.172 0.828 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.241 0.759 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.023 0.977 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.011 0.989 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.579 -24.049 3.279 26.477 hybrid contribution -0.217 1.838 -1.095 2.151 sum 10.362 -22.211 2.184 24.607 Atomic orbital electron populations 1.21718 0.96271 1.01756 1.00988 1.21680 0.95880 0.95982 1.02672 1.21823 0.93036 0.95845 1.02557 1.22029 0.95395 0.80405 0.99926 0.90221 1.22473 0.87666 1.01315 0.96009 1.60614 1.08872 1.16182 1.45609 1.22413 1.02126 0.87377 0.96311 1.22647 0.79315 1.02608 1.00912 1.47443 1.06898 1.04951 1.77486 1.16175 0.84979 0.81138 0.77617 1.90950 1.15259 1.83802 1.59678 1.45435 1.10979 1.04883 1.77425 1.20446 0.92213 0.84430 0.95231 1.22156 1.00042 0.97684 0.96172 1.20952 0.93652 0.86586 0.96845 1.44296 1.73059 1.07658 1.08161 1.19466 1.42087 0.84537 0.93765 0.91624 1.25923 0.99361 1.00859 0.98090 1.70166 1.46724 1.24533 1.16638 0.85301 0.78576 0.78650 0.77636 1.20262 1.21994 1.19980 1.20493 0.93770 0.95961 0.84110 1.22249 0.99729 0.93999 1.00702 0.93879 0.94044 0.91289 0.91099 0.90650 0.93866 0.92376 0.87563 0.92216 0.82828 0.86933 0.91839 0.89222 0.89610 0.75887 0.92776 0.91719 0.92618 0.97703 0.92460 0.93952 0.98854 0.92160 0.90786 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.91 71.98 0.71 -2.10 16 2 C -0.12 -2.11 5.51 30.59 0.17 -1.94 16 3 C -0.09 -2.23 3.17 30.59 0.10 -2.14 16 4 C 0.13 2.35 3.13 44.96 0.14 2.49 16 5 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 6 C 0.06 0.81 5.47 86.38 0.47 1.28 16 7 N -0.68 -8.06 6.85 -513.01 -3.52 -11.58 16 8 C 0.05 0.55 6.70 86.39 0.58 1.13 16 9 C 0.07 0.92 6.51 86.35 0.56 1.48 16 10 N -0.63 -13.28 3.01 -811.94 -2.44 -15.72 16 11 C 0.70 20.66 8.20 179.05 1.47 22.13 16 12 O -0.62 -23.07 11.50 -3.99 -0.05 -23.12 16 13 N -0.73 -20.25 4.99 -457.70 -2.28 -22.53 16 14 C 0.18 6.41 2.46 45.02 0.11 6.52 16 15 C -0.12 -4.42 5.65 30.67 0.17 -4.25 16 16 C 0.15 6.48 6.52 86.36 0.56 7.05 16 17 N -0.61 -31.17 2.98 -699.09 -2.08 -33.25 16 18 C -0.27 -14.86 9.56 84.03 0.80 -14.06 16 19 H 0.07 3.53 7.87 -2.91 -0.02 3.51 16 20 C -0.05 -2.60 4.95 84.86 0.42 -2.18 16 21 N -0.94 -55.52 11.28 21.65 0.24 -55.28 16 22 Si 0.97 44.55 29.58 68.60 2.03 46.58 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.18 8.86 5.27 86.36 0.45 9.32 16 27 C -0.13 -4.61 5.55 30.67 0.17 -4.44 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.03 6.81 -2.39 -0.02 1.02 16 33 H 0.04 1.28 7.23 -2.38 -0.02 1.26 16 34 H 0.06 1.80 6.31 -2.39 -0.02 1.79 16 35 H 0.11 1.16 6.90 -2.39 -0.02 1.15 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.35 2.94 8.83 -89.70 -0.79 2.15 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.09 5.75 -2.39 -0.01 1.07 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.40 8.70 6.14 -92.71 -0.57 8.13 16 43 H 0.05 2.24 7.51 -2.38 -0.02 2.23 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 47 H 0.06 2.47 7.93 -2.39 -0.02 2.46 16 48 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 49 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 50 H 0.06 3.24 6.23 -2.39 -0.01 3.22 16 51 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 52 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -69.67 388.01 -1.66 -71.33 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.46 Total: 23.28 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.90 Total: 20.28 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -10.08 Total: -138.36 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.67 -1.66 -71.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591351157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.163 kcal (2) G-P(sol) polarization free energy of solvation -69.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds