Wall clock time and date at job start Fri Apr 10 2020 18:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48493 * 109.47030 * 272.94454 * 3 2 1 5 5 H 1.48502 * 109.46771 * 32.94448 * 3 2 1 6 6 H 1.48499 * 109.47068 * 152.94151 * 3 2 1 7 7 C 1.38819 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99681 * 339.34186 * 7 2 1 9 9 N 1.36933 * 120.00143 * 159.34598 * 7 2 1 10 10 C 1.46924 * 120.63064 * 332.62580 * 9 7 2 11 11 C 1.53196 * 108.77941 * 233.58880 * 10 9 7 12 12 C 1.53038 * 109.30952 * 305.36683 * 11 10 9 13 13 N 1.46504 * 109.45765 * 181.38656 * 12 11 10 14 14 C 1.34773 * 120.00238 * 154.97584 * 13 12 11 15 15 O 1.21591 * 119.99561 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00061 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99715 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46785 * 180.02562 * 17 16 14 19 19 N 1.46895 * 109.47056 * 59.99717 * 18 17 16 20 20 C 1.52996 * 109.46903 * 299.99544 * 18 17 16 21 21 C 1.52999 * 109.47077 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47012 * 60.00086 * 21 20 18 23 23 C 1.52996 * 109.47129 * 299.99881 * 22 21 20 24 24 C 1.52999 * 109.47077 * 60.00158 * 23 22 21 25 25 C 1.53040 * 109.52718 * 61.37156 * 12 11 10 26 26 C 1.46926 * 120.63109 * 152.61040 * 9 7 2 27 27 H 0.96996 * 120.00173 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58511 * 113.79822 * 10 9 7 29 29 H 1.09008 * 109.70540 * 353.44700 * 10 9 7 30 30 H 1.08998 * 109.49458 * 185.41549 * 11 10 9 31 31 H 1.09002 * 109.51962 * 65.33348 * 11 10 9 32 32 H 1.08999 * 109.46191 * 301.35216 * 12 11 10 33 33 H 0.97000 * 119.99528 * 334.96536 * 13 12 11 34 34 H 0.96990 * 120.00177 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.47201 * 299.99718 * 17 16 14 36 36 H 1.08996 * 109.47227 * 59.99558 * 17 16 14 37 37 H 1.00893 * 111.00615 * 299.99584 * 19 18 17 38 38 H 1.00902 * 111.00142 * 63.95966 * 19 18 17 39 39 H 1.08997 * 109.47690 * 300.00362 * 20 18 17 40 40 H 1.08999 * 109.47089 * 60.00457 * 20 18 17 41 41 H 1.08996 * 109.47290 * 300.00151 * 21 20 18 42 42 H 1.09001 * 109.47188 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.46802 * 180.02562 * 22 21 20 44 44 H 1.08997 * 109.46895 * 60.00443 * 22 21 20 45 45 H 1.08996 * 109.47184 * 299.99942 * 23 22 21 46 46 H 1.08999 * 109.47089 * 179.97438 * 23 22 21 47 47 H 1.09001 * 109.47188 * 179.97438 * 24 23 22 48 48 H 1.09007 * 109.47049 * 60.00211 * 24 23 22 49 49 H 1.08993 * 109.49876 * 58.57650 * 25 12 11 50 50 H 1.09005 * 109.49616 * 178.67872 * 25 12 11 51 51 H 1.09005 * 109.58075 * 246.19890 * 26 9 7 52 52 H 1.09000 * 109.58601 * 6.47493 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0823 -1.3982 5 1 1.4801 2.6339 0.7614 6 1 3.5775 1.4230 0.6369 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3290 9 7 3.3136 -1.2401 -0.4188 10 6 3.8173 -0.2584 -1.3890 11 6 4.4622 -1.0078 -2.5593 12 6 5.5289 -1.9643 -2.0214 13 7 6.1708 -2.6585 -3.1405 14 6 7.4214 -3.1424 -3.0053 15 8 8.0170 -3.0024 -1.9545 16 7 8.0117 -3.7815 -4.0346 17 6 9.3713 -4.3070 -3.8877 18 6 9.8014 -4.9805 -5.1925 19 7 9.7715 -3.9977 -6.2838 20 6 8.8428 -6.1288 -5.5138 21 6 9.2733 -6.8027 -6.8181 22 6 10.6931 -7.3516 -6.6642 23 6 11.6517 -6.2033 -6.3429 24 6 11.2212 -5.5294 -5.0385 25 6 4.8749 -2.9899 -1.0928 26 6 4.2350 -2.2631 0.0942 27 1 -0.4850 0.8400 0.0004 28 1 4.5597 0.3804 -0.9105 29 1 2.9922 0.3521 -1.7562 30 1 4.9247 -0.2920 -3.2389 31 1 3.6998 -1.5757 -3.0926 32 1 6.2780 -1.3985 -1.4675 33 1 5.6956 -2.7699 -3.9788 34 1 7.5364 -3.8935 -4.8726 35 1 10.0543 -3.4889 -3.6592 36 1 9.3935 -5.0359 -3.0776 37 1 8.8438 -3.6202 -6.4052 38 1 10.4436 -3.2618 -6.1262 39 1 8.8649 -6.8580 -4.7040 40 1 7.8312 -5.7378 -5.6231 41 1 9.2514 -6.0737 -7.6282 42 1 8.5900 -7.6205 -7.0473 43 1 10.9999 -7.8313 -7.5937 44 1 10.7149 -8.0806 -5.8542 45 1 11.6299 -5.4743 -7.1529 46 1 12.6632 -6.5943 -6.2327 47 1 11.9045 -4.7116 -4.8093 48 1 11.2432 -6.2584 -4.2284 49 1 4.1084 -3.5390 -1.6395 50 1 5.6312 -3.6852 -0.7285 51 1 5.0115 -1.7878 0.6937 52 1 3.6844 -2.9759 0.7082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591351302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:52 Heat of formation + Delta-G solvation = -24.619479 kcal Electronic energy + Delta-G solvation = -28513.703595 eV Core-core repulsion = 24740.648699 eV Total energy + Delta-G solvation = -3773.054896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49937 -39.43127 -37.74132 -35.26594 -34.49190 -32.99851 -32.02050 -31.14033 -30.43899 -30.08209 -29.15625 -26.19827 -24.68310 -23.16186 -22.90406 -21.96665 -21.32092 -20.73177 -19.67852 -19.43087 -18.42303 -16.95365 -16.47437 -16.09001 -15.77824 -15.56800 -15.30889 -14.81558 -14.56718 -14.35324 -14.15375 -14.01796 -13.86933 -13.76906 -13.41567 -13.02317 -12.85439 -12.59752 -12.49576 -12.38756 -12.23910 -12.11677 -11.97155 -11.77688 -11.37822 -10.98959 -10.93209 -10.82274 -10.58719 -10.54911 -10.39956 -10.27945 -10.23784 -10.03664 -9.76584 -9.47681 -9.30486 -9.10000 -8.70012 -8.63763 -6.99434 -5.95487 -3.31154 2.64210 3.24962 3.30515 3.48627 3.52190 3.99788 4.16456 4.26277 4.33438 4.43009 4.52363 4.79450 4.87335 4.93908 4.95651 5.08873 5.15904 5.20602 5.23939 5.33027 5.34493 5.41105 5.46073 5.50128 5.59783 5.64070 5.67891 5.82887 5.84132 5.90124 5.91712 5.92245 6.04321 6.11656 6.16059 6.18454 6.27467 6.31817 6.42281 6.57148 6.65118 6.65516 6.71346 6.74969 6.85663 6.98954 7.00814 7.95637 8.00661 8.32509 8.63226 8.93465 9.71411 10.09252 11.20486 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.033455 B = 0.002204 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.740277 B =12702.709291 C =12796.638700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.140 4.140 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.702 3.298 15 O -0.590 6.590 16 N -0.750 5.750 17 C 0.110 3.890 18 C 0.111 3.889 19 N -0.830 5.830 20 C -0.105 4.105 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.110 4.110 24 C -0.104 4.104 25 C -0.141 4.141 26 C 0.151 3.849 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.392 0.608 34 H 0.391 0.609 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.338 0.662 38 H 0.342 0.658 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.025 0.975 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.902 -11.947 -16.167 29.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.402 3.598 15 O -0.467 6.467 16 N -0.408 5.408 17 C -0.017 4.017 18 C 0.018 3.982 19 N -0.360 5.360 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.181 4.181 26 C 0.024 3.976 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.225 0.775 34 H 0.225 0.775 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.043 0.957 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.508 -12.331 -15.604 30.036 hybrid contribution -0.386 1.577 -0.001 1.623 sum 22.122 -10.754 -15.605 29.130 Atomic orbital electron populations 1.69834 1.05713 1.26539 1.53057 1.25293 0.95248 0.97569 0.99567 0.86970 0.80150 0.84697 0.76992 1.21662 1.23108 1.19480 1.18931 0.84920 0.94781 1.40041 0.89640 1.44404 1.08718 1.33328 1.46536 1.21301 0.97270 0.92038 0.89064 1.22350 0.97470 0.98388 0.99765 1.20853 0.93909 0.92651 0.86097 1.45469 1.14543 1.61622 1.17603 1.15996 0.81575 0.78525 0.83733 1.90930 1.64827 1.63586 1.27381 1.45125 1.17357 1.62644 1.15687 1.21994 0.82378 0.98428 0.98861 1.21066 0.96553 0.92764 0.87855 1.58952 1.11553 1.20135 1.45347 1.21540 0.97739 0.96500 0.98506 1.21417 0.95943 0.99666 0.97863 1.21503 0.95401 0.97571 1.01028 1.21396 0.97820 0.97812 0.97701 1.21493 0.93980 1.00171 0.98587 1.22390 0.99319 0.98082 0.98342 1.20902 0.92302 0.91324 0.93059 0.92777 0.95489 0.90514 0.92328 0.91190 0.90010 0.77535 0.77464 0.91812 0.91362 0.84910 0.84469 0.91463 0.92197 0.90643 0.92711 0.92345 0.92566 0.90650 0.92653 0.91840 0.91338 0.91966 0.92284 0.95698 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.74 13.97 55.49 0.78 -26.96 16 2 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 3 Si 0.88 22.33 24.35 -169.99 -4.14 18.19 16 4 H -0.29 -6.99 6.62 56.52 0.37 -6.61 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.77 6.63 56.52 0.37 -6.40 16 7 C -0.26 -7.20 10.04 -15.06 -0.15 -7.36 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.61 -14.40 2.77 -172.31 -0.48 -14.88 16 10 C 0.13 2.79 4.20 -3.71 -0.02 2.77 16 11 C -0.14 -2.36 5.55 -26.61 -0.15 -2.50 16 12 C 0.17 2.75 2.42 -67.89 -0.16 2.59 16 13 N -0.74 -9.57 5.08 -58.63 -0.30 -9.87 16 14 C 0.70 9.73 8.53 -86.92 -0.74 8.99 16 15 O -0.59 -10.85 16.01 5.29 0.08 -10.76 16 16 N -0.75 -7.01 5.01 -65.22 -0.33 -7.33 16 17 C 0.11 0.96 4.77 -4.04 -0.02 0.94 16 18 C 0.11 0.69 0.56 -131.60 -0.07 0.61 16 19 N -0.83 -4.50 7.34 0.74 0.01 -4.49 16 20 C -0.10 -0.67 4.71 -26.73 -0.13 -0.80 16 21 C -0.11 -0.69 5.77 -26.73 -0.15 -0.85 16 22 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 23 C -0.11 -0.64 5.77 -26.73 -0.15 -0.80 16 24 C -0.10 -0.63 4.85 -26.73 -0.13 -0.76 16 25 C -0.14 -2.46 5.65 -26.61 -0.15 -2.61 16 26 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.03 0.58 7.07 -51.93 -0.37 0.22 16 29 H 0.08 1.79 4.50 -51.92 -0.23 1.56 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 33 H 0.39 3.95 8.62 -40.82 -0.35 3.60 16 34 H 0.39 2.66 6.29 -40.82 -0.26 2.41 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.34 1.71 7.67 -39.30 -0.30 1.41 16 38 H 0.34 1.79 8.98 -39.29 -0.35 1.44 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.38 6.86 -51.93 -0.36 0.02 16 41 H 0.07 0.51 7.60 -51.93 -0.39 0.12 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.49 7.60 -51.93 -0.39 0.10 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -32.61 386.44 -10.20 -42.81 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -9.35 Total: 4.52 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.30 Total: 2.97 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.32 Total: -63.54 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.61 -10.20 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591351302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.188 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds