Wall clock time and date at job start Fri Apr 10 2020 18:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46790 * 299.99796 * 3 2 1 6 6 H 1.48494 * 109.47240 * 59.99818 * 3 2 1 7 7 C 1.38811 * 120.00435 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00175 * 163.06780 * 7 2 1 9 9 N 1.36938 * 119.99953 * 343.07346 * 7 2 1 10 10 C 1.46929 * 120.62684 * 331.84381 * 9 7 2 11 11 C 1.53193 * 108.77280 * 233.58522 * 10 9 7 12 12 C 1.53033 * 109.31720 * 305.36954 * 11 10 9 13 13 N 1.46499 * 109.46071 * 181.38800 * 12 11 10 14 14 C 1.34772 * 120.00111 * 154.97461 * 13 12 11 15 15 O 1.21591 * 120.00048 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00205 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00119 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47043 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.46935 * 180.02562 * 18 17 16 20 20 C 1.53120 * 109.52405 * 184.99962 * 19 18 17 21 21 C 1.53031 * 109.28123 * 182.44350 * 20 19 18 22 22 N 1.46840 * 109.52642 * 59.17786 * 21 20 19 23 23 C 1.46854 * 111.19773 * 298.25808 * 22 21 20 24 24 C 1.53038 * 109.52190 * 61.74379 * 23 22 21 25 25 C 1.53039 * 109.52903 * 61.37284 * 12 11 10 26 26 C 1.46925 * 120.63051 * 151.82721 * 9 7 2 27 27 H 0.96998 * 120.00553 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58236 * 113.80274 * 10 9 7 29 29 H 1.08994 * 109.70854 * 353.44759 * 10 9 7 30 30 H 1.09003 * 109.49630 * 185.41315 * 11 10 9 31 31 H 1.09002 * 109.52125 * 65.34079 * 11 10 9 32 32 H 1.09009 * 109.45978 * 301.35626 * 12 11 10 33 33 H 0.97001 * 120.00192 * 334.97200 * 13 12 11 34 34 H 0.97001 * 120.00098 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.47533 * 60.00314 * 17 16 14 36 36 H 1.09005 * 109.47587 * 299.99727 * 17 16 14 37 37 H 1.08998 * 109.47186 * 60.00123 * 18 17 16 38 38 H 1.09003 * 109.46948 * 299.99808 * 18 17 16 39 39 H 1.09000 * 109.58015 * 305.15660 * 19 18 17 40 40 H 1.09001 * 109.50148 * 62.49661 * 20 19 18 41 41 H 1.09001 * 109.50023 * 302.37982 * 20 19 18 42 42 H 1.09003 * 109.46077 * 299.16228 * 21 20 19 43 43 H 1.09006 * 109.46460 * 179.19476 * 21 20 19 44 44 H 1.00903 * 111.00005 * 62.35575 * 22 21 20 45 45 H 1.09003 * 109.45872 * 181.75724 * 23 22 21 46 46 H 1.08999 * 109.45883 * 301.72542 * 23 22 21 47 47 H 1.08999 * 109.50311 * 180.88152 * 24 23 22 48 48 H 1.09002 * 109.50285 * 60.75538 * 24 23 22 49 49 H 1.08998 * 109.49897 * 58.57558 * 25 12 11 50 50 H 1.08998 * 109.49882 * 178.67632 * 25 12 11 51 51 H 1.08998 * 109.58384 * 246.19781 * 26 9 7 52 52 H 1.08995 * 109.58904 * 6.48225 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2719 9 7 1.3702 -2.3622 0.3463 10 6 0.2262 -2.3398 1.2681 11 6 0.4976 -3.3188 2.4146 12 6 0.8123 -4.7005 1.8368 13 7 1.0399 -5.6471 2.9314 14 6 0.8361 -6.9649 2.7360 15 8 0.4628 -7.3682 1.6514 16 7 1.0459 -7.8359 3.7430 17 6 0.8239 -9.2683 3.5307 18 6 1.1316 -10.0289 4.8222 19 6 0.9003 -11.5250 4.6003 20 6 1.0867 -12.2733 5.9231 21 6 0.9143 -13.7748 5.6830 22 7 1.9033 -14.2311 4.6982 23 6 1.7138 -13.5607 3.4054 24 6 1.9103 -12.0528 3.5776 25 6 2.0678 -4.6169 0.9657 26 6 1.8140 -3.6529 -0.1976 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6769 -2.6405 0.7369 29 1 0.0967 -1.3345 1.6689 30 1 -0.3829 -3.3837 3.0538 31 1 1.3471 -2.9674 3.0003 32 1 -0.0279 -5.0408 1.2312 33 1 1.3373 -5.3254 3.7969 34 1 1.3441 -7.5143 4.6082 35 1 1.4783 -9.6235 2.7348 36 1 -0.2155 -9.4371 3.2490 37 1 0.4768 -9.6737 5.6179 38 1 2.1709 -9.8603 5.1043 39 1 -0.1119 -11.6871 4.2297 40 1 0.3423 -11.9319 6.6424 41 1 2.0860 -12.0796 6.3130 42 1 -0.0899 -13.9693 5.3061 43 1 1.0606 -14.3117 6.6203 44 1 2.8430 -14.0971 5.0407 45 1 2.4410 -13.9422 2.6885 46 1 0.7060 -13.7563 3.0393 47 1 1.7542 -11.5539 2.6211 48 1 2.9225 -11.8557 3.9307 49 1 2.9025 -4.2528 1.5646 50 1 2.3049 -5.6058 0.5733 51 1 1.0404 -4.0606 -0.8482 52 1 2.7334 -3.5131 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593705023.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:57 Heat of formation + Delta-G solvation = -31.460883 kcal Electronic energy + Delta-G solvation = -27595.656754 eV Core-core repulsion = 23822.305192 eV Total energy + Delta-G solvation = -3773.351562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.05251 -39.43276 -37.52415 -35.68851 -34.31258 -33.34976 -31.99980 -31.31522 -30.14900 -29.53293 -28.46934 -25.16247 -24.29337 -23.30987 -22.28935 -22.04225 -21.65917 -20.78783 -20.37092 -19.39472 -18.03060 -16.84038 -16.62627 -16.09709 -15.73822 -15.12014 -14.98565 -14.79295 -14.75672 -14.47049 -14.29187 -14.04276 -13.63563 -13.53493 -13.44800 -12.96589 -12.75297 -12.65567 -12.44762 -12.31507 -12.06338 -11.70644 -11.64225 -11.54789 -11.43004 -11.11297 -10.96071 -10.83071 -10.72671 -10.64614 -10.46136 -10.24492 -10.03048 -9.98967 -9.73304 -9.51983 -9.14941 -8.81447 -8.57668 -8.42359 -6.67111 -5.78805 -3.20871 2.81187 3.36897 3.40031 3.44931 3.47227 3.85453 4.15794 4.22873 4.33291 4.50017 4.53560 4.65241 4.74301 4.88225 4.95829 4.98087 5.09802 5.22068 5.35251 5.36548 5.42247 5.44053 5.44973 5.49733 5.52943 5.61044 5.63337 5.64383 5.70234 5.83218 5.92413 5.94808 6.10617 6.31376 6.38401 6.44820 6.52175 6.56402 6.60125 6.63564 6.82672 6.91421 6.93107 7.01303 7.13769 7.33491 7.63299 7.80433 8.17389 8.45483 8.78527 9.21687 9.84991 10.42284 11.30153 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.042558 B = 0.001775 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.771284 B =15767.028207 C =15967.836801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.740 5.740 14 C 0.700 3.300 15 O -0.591 6.591 16 N -0.754 5.754 17 C 0.139 3.861 18 C -0.125 4.125 19 C -0.083 4.083 20 C -0.152 4.152 21 C 0.056 3.944 22 N -0.688 5.688 23 C 0.055 3.945 24 C -0.157 4.157 25 C -0.139 4.139 26 C 0.147 3.853 27 H 0.253 0.747 28 H 0.021 0.979 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.390 0.610 34 H 0.393 0.607 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.340 0.660 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.056 0.944 50 H 0.054 0.946 51 H 0.020 0.980 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.730 -24.405 14.834 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.400 3.600 15 O -0.469 6.469 16 N -0.410 5.410 17 C 0.015 3.985 18 C -0.163 4.163 19 C -0.102 4.102 20 C -0.191 4.191 21 C -0.074 4.074 22 N -0.316 5.316 23 C -0.075 4.075 24 C -0.196 4.196 25 C -0.179 4.179 26 C 0.020 3.980 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.223 0.777 34 H 0.226 0.774 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.157 0.843 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.038 0.962 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.902 -25.204 13.588 28.697 hybrid contribution 1.031 2.171 1.111 2.648 sum 2.933 -23.033 14.699 27.480 Atomic orbital electron populations 1.70032 1.05245 1.25390 1.54115 1.25057 0.95294 0.98421 1.00969 0.86229 0.79357 0.83976 0.77253 1.20284 1.21733 1.21603 1.19238 0.92596 0.84764 1.41421 0.91612 1.44102 1.35811 1.01668 1.49980 1.20739 0.88930 0.97868 0.87676 1.22542 1.00448 0.94786 1.00823 1.20904 0.98318 0.87516 0.86773 1.45550 1.72725 1.04964 1.16063 1.16034 0.78564 0.81298 0.84081 1.90920 1.53521 1.78032 1.24458 1.45158 1.74768 1.06935 1.14184 1.21178 1.01461 0.78642 0.97253 1.21842 1.02276 0.94759 0.97456 1.21096 1.00026 0.93539 0.95532 1.22312 1.02296 0.97218 0.97306 1.22030 0.96876 0.92699 0.95808 1.60653 1.07554 1.59497 1.03936 1.22046 1.02636 0.91162 0.91614 1.22404 0.99239 0.97848 1.00136 1.22387 0.97259 0.99460 0.98839 1.20880 0.97879 0.86510 0.92694 0.93668 0.96085 0.89046 0.92808 0.92266 0.90111 0.77692 0.77419 0.91639 0.91904 0.91233 0.91391 0.90629 0.91293 0.91920 0.90866 0.90754 0.84293 0.90622 0.90809 0.90696 0.91872 0.92502 0.92750 0.96160 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.94 2.99 -172.32 -0.52 -15.46 16 10 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 11 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 12 C 0.17 3.02 2.42 -67.89 -0.16 2.86 16 13 N -0.74 -10.68 5.08 -58.64 -0.30 -10.98 16 14 C 0.70 10.72 8.53 -86.92 -0.74 9.98 16 15 O -0.59 -11.70 16.01 5.29 0.08 -11.62 16 16 N -0.75 -8.08 5.56 -65.22 -0.36 -8.44 16 17 C 0.14 1.32 5.44 -4.04 -0.02 1.30 16 18 C -0.13 -0.78 4.80 -26.73 -0.13 -0.91 16 19 C -0.08 -0.48 2.25 -90.50 -0.20 -0.69 16 20 C -0.15 -0.76 5.36 -26.65 -0.14 -0.90 16 21 C 0.06 0.30 6.55 -3.84 -0.03 0.27 16 22 N -0.69 -4.20 6.87 -113.81 -0.78 -4.98 16 23 C 0.06 0.34 6.55 -3.83 -0.03 0.31 16 24 C -0.16 -0.96 5.06 -26.65 -0.13 -1.10 16 25 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 26 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.65 7.58 -51.92 -0.39 1.25 16 33 H 0.39 4.46 8.62 -40.82 -0.35 4.10 16 34 H 0.39 3.04 8.49 -40.82 -0.35 2.70 16 35 H 0.07 0.70 6.64 -51.93 -0.34 0.35 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.34 1.76 8.86 -39.29 -0.35 1.41 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -32.43 398.58 -12.03 -44.46 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -9.60 Total: 4.25 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.16 Total: 5.74 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.34 Total: -65.41 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.43 -12.03 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593705023.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.996 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds