Wall clock time and date at job start Fri Apr 10 2020 18:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46790 * 299.99796 * 3 2 1 6 6 H 1.48494 * 109.47240 * 59.99818 * 3 2 1 7 7 C 1.38811 * 120.00435 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00175 * 163.06780 * 7 2 1 9 9 N 1.36938 * 119.99953 * 343.07346 * 7 2 1 10 10 C 1.46929 * 120.62684 * 331.84381 * 9 7 2 11 11 C 1.53193 * 108.77280 * 233.58522 * 10 9 7 12 12 C 1.53033 * 109.31720 * 305.36954 * 11 10 9 13 13 N 1.46499 * 109.46071 * 181.38800 * 12 11 10 14 14 C 1.34772 * 120.00111 * 154.97461 * 13 12 11 15 15 O 1.21591 * 120.00048 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00205 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00119 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47043 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.46935 * 180.02562 * 18 17 16 20 20 C 1.53120 * 109.52405 * 184.99962 * 19 18 17 21 21 C 1.53031 * 109.28123 * 182.44350 * 20 19 18 22 22 N 1.46840 * 109.52642 * 59.17786 * 21 20 19 23 23 C 1.46854 * 111.19773 * 298.25808 * 22 21 20 24 24 C 1.53038 * 109.52190 * 61.74379 * 23 22 21 25 25 C 1.53039 * 109.52903 * 61.37284 * 12 11 10 26 26 C 1.46925 * 120.63051 * 151.82721 * 9 7 2 27 27 H 0.96998 * 120.00553 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58236 * 113.80274 * 10 9 7 29 29 H 1.08994 * 109.70854 * 353.44759 * 10 9 7 30 30 H 1.09003 * 109.49630 * 185.41315 * 11 10 9 31 31 H 1.09002 * 109.52125 * 65.34079 * 11 10 9 32 32 H 1.09009 * 109.45978 * 301.35626 * 12 11 10 33 33 H 0.97001 * 120.00192 * 334.97200 * 13 12 11 34 34 H 0.97001 * 120.00098 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.47533 * 60.00314 * 17 16 14 36 36 H 1.09005 * 109.47587 * 299.99727 * 17 16 14 37 37 H 1.08998 * 109.47186 * 60.00123 * 18 17 16 38 38 H 1.09003 * 109.46948 * 299.99808 * 18 17 16 39 39 H 1.09000 * 109.58015 * 305.15660 * 19 18 17 40 40 H 1.09001 * 109.50148 * 62.49661 * 20 19 18 41 41 H 1.09001 * 109.50023 * 302.37982 * 20 19 18 42 42 H 1.09003 * 109.46077 * 299.16228 * 21 20 19 43 43 H 1.09006 * 109.46460 * 179.19476 * 21 20 19 44 44 H 1.00903 * 111.00005 * 62.35575 * 22 21 20 45 45 H 1.09003 * 109.45872 * 181.75724 * 23 22 21 46 46 H 1.08999 * 109.45883 * 301.72542 * 23 22 21 47 47 H 1.08999 * 109.50311 * 180.88152 * 24 23 22 48 48 H 1.09002 * 109.50285 * 60.75538 * 24 23 22 49 49 H 1.08998 * 109.49897 * 58.57558 * 25 12 11 50 50 H 1.08998 * 109.49882 * 178.67632 * 25 12 11 51 51 H 1.08998 * 109.58384 * 246.19781 * 26 9 7 52 52 H 1.08995 * 109.58904 * 6.48225 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2719 9 7 1.3702 -2.3622 0.3463 10 6 0.2262 -2.3398 1.2681 11 6 0.4976 -3.3188 2.4146 12 6 0.8123 -4.7005 1.8368 13 7 1.0399 -5.6471 2.9314 14 6 0.8361 -6.9649 2.7360 15 8 0.4628 -7.3682 1.6514 16 7 1.0459 -7.8359 3.7430 17 6 0.8239 -9.2683 3.5307 18 6 1.1316 -10.0289 4.8222 19 6 0.9003 -11.5250 4.6003 20 6 1.0867 -12.2733 5.9231 21 6 0.9143 -13.7748 5.6830 22 7 1.9033 -14.2311 4.6982 23 6 1.7138 -13.5607 3.4054 24 6 1.9103 -12.0528 3.5776 25 6 2.0678 -4.6169 0.9657 26 6 1.8140 -3.6529 -0.1976 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6769 -2.6405 0.7369 29 1 0.0967 -1.3345 1.6689 30 1 -0.3829 -3.3837 3.0538 31 1 1.3471 -2.9674 3.0003 32 1 -0.0279 -5.0408 1.2312 33 1 1.3373 -5.3254 3.7969 34 1 1.3441 -7.5143 4.6082 35 1 1.4783 -9.6235 2.7348 36 1 -0.2155 -9.4371 3.2490 37 1 0.4768 -9.6737 5.6179 38 1 2.1709 -9.8603 5.1043 39 1 -0.1119 -11.6871 4.2297 40 1 0.3423 -11.9319 6.6424 41 1 2.0860 -12.0796 6.3130 42 1 -0.0899 -13.9693 5.3061 43 1 1.0606 -14.3117 6.6203 44 1 2.8430 -14.0971 5.0407 45 1 2.4410 -13.9422 2.6885 46 1 0.7060 -13.7563 3.0393 47 1 1.7542 -11.5539 2.6211 48 1 2.9225 -11.8557 3.9307 49 1 2.9025 -4.2528 1.5646 50 1 2.3049 -5.6058 0.5733 51 1 1.0404 -4.0606 -0.8482 52 1 2.7334 -3.5131 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593705023.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:56 Heat of formation + Delta-G solvation = -54.758741 kcal Electronic energy + Delta-G solvation = -27596.667025 eV Core-core repulsion = 23822.305192 eV Total energy + Delta-G solvation = -3774.361833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22218 -40.02196 -39.10364 -36.63282 -35.88830 -34.29860 -33.63109 -31.82736 -31.73508 -31.17535 -29.34904 -26.89037 -25.16463 -23.98975 -23.82001 -23.50148 -22.37537 -21.85573 -21.12614 -20.96085 -19.34488 -18.58320 -17.57188 -17.02683 -16.77045 -16.65755 -15.92598 -15.59408 -15.54334 -15.51967 -15.35403 -15.27900 -15.16671 -14.84184 -14.67569 -14.30776 -14.08818 -13.96147 -13.24053 -13.16863 -13.06505 -13.02411 -12.67935 -12.62777 -12.51775 -12.24835 -12.21997 -12.11484 -12.08809 -11.99030 -11.87185 -11.56174 -11.43533 -11.39671 -11.21348 -11.11577 -10.57003 -10.30798 -9.72771 -9.26644 -8.71248 -7.87988 -5.33847 1.47568 1.49479 1.60354 1.71629 2.17616 2.51839 3.24126 3.31679 3.44228 3.66130 3.69418 3.74433 3.89995 3.99245 4.06525 4.16387 4.23071 4.32024 4.34272 4.46056 4.47945 4.51395 4.57188 4.64429 4.65086 4.80950 4.83809 4.87614 4.90181 4.99634 5.01544 5.04553 5.06331 5.09245 5.14450 5.15799 5.18208 5.27556 5.29439 5.46390 5.47183 5.52484 5.60647 5.64713 5.70201 6.05835 6.11896 6.38888 6.51597 7.14211 7.14843 7.62186 7.83487 8.36833 9.19360 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.042558 B = 0.001775 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.771284 B =15767.028207 C =15967.836801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.639 6.639 16 N -0.733 5.733 17 C 0.139 3.861 18 C -0.111 4.111 19 C -0.081 4.081 20 C -0.144 4.144 21 C 0.055 3.945 22 N -0.696 5.696 23 C 0.057 3.943 24 C -0.153 4.153 25 C -0.123 4.123 26 C 0.144 3.856 27 H 0.251 0.749 28 H -0.006 1.006 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.410 0.590 34 H 0.412 0.588 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.346 0.654 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.056 0.944 51 H 0.006 0.994 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -25.104 17.341 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.521 6.521 16 N -0.390 5.390 17 C 0.015 3.985 18 C -0.149 4.149 19 C -0.101 4.101 20 C -0.183 4.183 21 C -0.075 4.075 22 N -0.325 5.325 23 C -0.073 4.073 24 C -0.192 4.192 25 C -0.163 4.163 26 C 0.018 3.982 27 H 0.060 0.940 28 H 0.012 0.988 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.246 0.754 34 H 0.248 0.752 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.164 0.836 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.024 0.976 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.407 -25.937 16.174 30.756 hybrid contribution 0.547 2.299 0.279 2.380 sum 3.955 -23.638 16.453 29.071 Atomic orbital electron populations 1.70189 1.06714 1.25901 1.55394 1.25829 0.96054 1.01561 1.01115 0.85178 0.78600 0.79682 0.76783 1.19068 1.22164 1.21370 1.19558 0.92879 0.85814 1.41014 0.91462 1.44352 1.35938 1.02163 1.50744 1.20571 0.87709 0.97770 0.88766 1.22251 1.01972 0.93534 0.98903 1.20479 0.96864 0.87779 0.87336 1.45123 1.72641 1.04327 1.16013 1.16211 0.78262 0.81668 0.84204 1.90898 1.55620 1.78815 1.26764 1.44987 1.73272 1.06819 1.13925 1.21257 1.00354 0.78047 0.98871 1.21748 1.03156 0.94275 0.95741 1.21078 0.99456 0.93463 0.96069 1.22238 1.02837 0.96618 0.96648 1.22051 0.96335 0.93164 0.95923 1.60647 1.08142 1.59699 1.04051 1.21999 1.02220 0.91214 0.91878 1.22349 0.99512 0.97701 0.99642 1.22176 0.97945 0.98424 0.97779 1.20965 0.97328 0.85995 0.93894 0.94005 0.98823 0.91747 0.90535 0.90993 0.92847 0.75383 0.75192 0.92885 0.93362 0.89985 0.90299 0.91451 0.90535 0.91358 0.91564 0.89849 0.83635 0.90511 0.91601 0.91989 0.91509 0.91484 0.92540 0.97630 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.37 11.19 21.65 0.24 -55.13 16 2 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 3 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.26 -14.48 9.58 84.03 0.81 -13.68 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 9 N -0.61 -31.01 2.99 -699.09 -2.09 -33.11 16 10 C 0.18 8.58 5.30 86.36 0.46 9.03 16 11 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 12 C 0.18 6.30 2.42 45.02 0.11 6.41 16 13 N -0.73 -19.36 5.08 -457.69 -2.33 -21.69 16 14 C 0.70 20.30 8.53 179.06 1.53 21.82 16 15 O -0.64 -25.24 16.01 -4.00 -0.06 -25.30 16 16 N -0.73 -14.06 5.56 -478.52 -2.66 -16.72 16 17 C 0.14 2.45 5.44 86.38 0.47 2.92 16 18 C -0.11 -1.12 4.80 30.60 0.15 -0.97 16 19 C -0.08 -0.82 2.25 -10.71 -0.02 -0.85 16 20 C -0.14 -1.10 5.36 30.64 0.16 -0.94 16 21 C 0.05 0.50 6.55 86.33 0.57 1.06 16 22 N -0.70 -7.62 6.87 -514.00 -3.53 -11.15 16 23 C 0.06 0.65 6.55 86.32 0.57 1.22 16 24 C -0.15 -1.72 5.06 30.65 0.16 -1.57 16 25 C -0.12 -4.51 5.65 30.67 0.17 -4.34 16 26 C 0.14 6.39 6.52 86.36 0.56 6.95 16 27 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 28 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.05 2.19 7.58 -2.38 -0.02 2.18 16 33 H 0.41 7.91 8.62 -92.71 -0.80 7.11 16 34 H 0.41 4.93 8.49 -92.71 -0.79 4.14 16 35 H 0.05 1.10 6.64 -2.39 -0.02 1.08 16 36 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.61 8.14 -2.38 -0.02 0.60 16 44 H 0.35 3.03 8.86 -89.69 -0.79 2.23 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.06 0.86 6.70 -2.39 -0.02 0.85 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 52 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -71.39 398.58 -3.60 -74.99 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -1.47 Total: 21.18 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 6.27 Total: 20.35 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -10.37 Total: -137.79 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.06 Total: -25.30 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -71.39 -3.60 -74.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593705023.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.230 kcal (2) G-P(sol) polarization free energy of solvation -71.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds