Wall clock time and date at job start Fri Apr 10 2020 18:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46963 * 110.99863 * 2 1 4 4 C 1.53055 * 109.36240 * 183.19076 * 3 2 1 5 5 N 1.46956 * 109.36582 * 301.59814 * 4 3 2 6 6 C 1.46896 * 111.00162 * 183.18643 * 5 4 3 7 7 C 1.46955 * 110.87798 * 59.32319 * 5 4 3 8 8 H 1.08997 * 109.49413 * 60.64348 * 7 5 4 9 9 C 1.53006 * 109.49023 * 180.71205 * 7 5 4 10 10 N 1.46500 * 109.46774 * 54.23350 * 9 7 5 11 11 C 1.34775 * 119.99990 * 184.87211 * 10 9 7 12 12 O 1.21591 * 120.00028 * 355.18524 * 11 10 9 13 13 N 1.34771 * 120.00345 * 175.17734 * 11 10 9 14 14 C 1.46925 * 120.62911 * 4.95730 * 13 11 10 15 15 C 1.53198 * 108.77388 * 233.58051 * 14 13 11 16 16 C 1.53039 * 109.31377 * 305.36397 * 15 14 13 17 17 C 1.53042 * 109.53483 * 61.36470 * 16 15 14 18 18 H 1.09000 * 109.49661 * 58.58865 * 17 16 15 19 19 C 1.50703 * 109.49506 * 178.64927 * 17 16 15 20 20 H 1.08009 * 119.99869 * 0.02562 * 19 17 16 21 21 C 1.37876 * 120.00104 * 179.97438 * 19 17 16 22 22 N 1.31507 * 119.99831 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99940 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47249 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47260 * 120.00204 * 23 21 19 26 26 H 1.48502 * 109.46914 * 240.00108 * 23 21 19 27 27 C 1.46929 * 120.63250 * 184.67142 * 13 11 10 28 28 C 1.46956 * 111.00287 * 123.80042 * 2 1 3 29 29 H 1.08998 * 109.47533 * 63.94898 * 1 2 3 30 30 H 1.09000 * 109.47128 * 183.95852 * 1 2 3 31 31 H 1.09005 * 109.47012 * 303.95200 * 1 2 3 32 32 H 1.08999 * 109.48764 * 63.22951 * 3 2 1 33 33 H 1.08996 * 109.48760 * 303.15628 * 3 2 1 34 34 H 1.08996 * 109.49028 * 181.63186 * 4 3 2 35 35 H 1.08997 * 109.50476 * 61.57822 * 4 3 2 36 36 H 1.09001 * 109.47063 * 52.89162 * 6 5 4 37 37 H 1.08999 * 109.47437 * 172.88683 * 6 5 4 38 38 H 1.09003 * 109.47150 * 292.89720 * 6 5 4 39 39 H 1.08993 * 109.47374 * 174.23572 * 9 7 5 40 40 H 1.08998 * 109.46809 * 294.23578 * 9 7 5 41 41 H 0.96999 * 120.00010 * 4.88312 * 10 9 7 42 42 H 1.09007 * 109.58794 * 353.36909 * 14 13 11 43 43 H 1.09003 * 109.58773 * 113.79218 * 14 13 11 44 44 H 1.08994 * 109.49461 * 65.31798 * 15 14 13 45 45 H 1.09001 * 109.49745 * 185.37546 * 15 14 13 46 46 H 1.09004 * 109.45685 * 181.38424 * 16 15 14 47 47 H 1.08999 * 109.45903 * 301.34718 * 16 15 14 48 48 H 0.97001 * 120.00091 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.58724 * 246.20222 * 27 13 11 50 50 H 1.08999 * 109.58299 * 6.63007 * 27 13 11 51 51 H 1.08998 * 109.49130 * 296.77737 * 28 2 1 52 52 H 1.08999 * 109.48825 * 56.82466 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.5191 0.5659 1.0596 7 6 3.5235 -0.8060 1.0596 8 1 3.8253 -1.3114 0.1423 9 6 4.0771 -1.5654 2.2671 10 7 3.7880 -0.8138 3.4909 11 6 4.2686 -1.2430 4.6747 12 8 4.8673 -2.2992 4.7409 13 7 4.0858 -0.5014 5.7851 14 6 3.2728 0.7217 5.7429 15 6 4.0981 1.8820 6.3082 16 6 4.6032 1.5108 7.7044 17 6 5.5043 0.2773 7.6114 18 1 6.3408 0.4873 6.9447 19 6 6.0278 -0.0676 8.9819 20 1 5.7457 0.5326 9.8344 21 6 6.8658 -1.1498 9.1475 22 7 7.2079 -1.8814 8.1097 23 14 7.5140 -1.5777 10.8464 24 1 6.9842 -0.6069 11.8374 25 1 7.0760 -2.9485 11.2126 26 1 8.9978 -1.5174 10.8397 27 6 4.6904 -0.9041 7.0622 28 6 1.9957 -0.7632 1.1400 29 1 -0.3634 0.4513 -0.9232 30 1 -0.3633 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8525 32 1 1.6938 1.8774 0.9174 33 1 1.6012 1.9129 -0.8602 34 1 3.9178 2.3448 -0.0513 35 1 3.8256 0.8482 -1.0107 36 1 5.8825 1.5918 1.0002 37 1 5.8825 0.1043 1.9777 38 1 5.8824 0.0016 0.2007 39 1 3.6083 -2.5477 2.3247 40 1 5.1553 -1.6831 2.1591 41 1 3.2506 -0.0073 3.4493 42 1 2.9940 0.9398 4.7119 43 1 2.3747 0.5845 6.3453 44 1 4.9477 2.0767 5.6538 45 1 3.4755 2.7744 6.3713 46 1 5.1702 2.3444 8.1189 47 1 3.7538 1.2921 8.3515 48 1 7.7978 -2.6426 8.2261 49 1 3.9056 -1.1711 7.7700 50 1 5.3472 -1.7591 6.9020 51 1 1.6938 -0.2821 2.0704 52 1 1.6011 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595499955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:10 Heat of formation + Delta-G solvation = -30.914397 kcal Electronic energy + Delta-G solvation = -29666.924566 eV Core-core repulsion = 25893.596702 eV Total energy + Delta-G solvation = -3773.327864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42915 -40.40120 -38.43747 -36.77403 -35.60312 -35.07303 -33.45781 -32.11104 -31.34772 -30.21031 -27.76939 -26.89679 -26.25025 -25.65471 -24.19159 -23.44383 -22.67689 -21.79864 -20.52658 -20.26756 -19.08986 -18.19870 -17.37593 -17.00636 -16.79207 -16.53730 -16.06933 -15.92889 -15.71765 -15.59084 -15.18868 -15.13973 -15.00998 -14.81267 -14.49397 -14.23618 -14.15686 -13.67663 -13.49339 -13.41089 -13.15816 -13.12169 -12.90311 -12.77981 -12.63495 -12.38399 -12.27969 -12.25621 -12.19944 -11.83844 -11.78061 -11.62679 -11.55380 -11.19388 -10.93956 -10.79654 -10.50638 -10.08008 -9.44417 -9.27120 -9.19339 -8.08312 -6.25325 1.40485 1.42115 1.54173 1.83957 2.32872 2.43346 2.82187 2.92346 3.13497 3.23300 3.68224 3.82285 4.01706 4.06774 4.17833 4.20361 4.26090 4.30970 4.38976 4.51239 4.52114 4.60345 4.61744 4.64261 4.68447 4.75062 4.75235 4.78615 4.82445 4.86410 4.89733 4.99579 5.04548 5.06224 5.08362 5.11995 5.28623 5.30536 5.35350 5.57488 5.60274 5.68375 5.90983 5.92121 5.94851 6.00736 6.12036 6.14848 6.22643 6.38997 6.87912 7.20634 7.44484 7.75302 8.95153 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.003012 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.380777 B = 9295.285189 C = 9574.585249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.057 3.943 4 C 0.059 3.941 5 N -0.544 5.544 6 C 0.028 3.972 7 C 0.088 3.912 8 H 0.068 0.932 9 C 0.148 3.852 10 N -0.719 5.719 11 C 0.693 3.307 12 O -0.644 6.644 13 N -0.627 5.627 14 C 0.114 3.886 15 C -0.123 4.123 16 C -0.104 4.104 17 C 0.040 3.960 18 H -0.015 1.015 19 C -0.534 4.534 20 H 0.062 0.938 21 C 0.008 3.992 22 N -0.914 5.914 23 Si 0.958 3.042 24 H -0.260 1.260 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.145 3.855 28 C 0.066 3.934 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.408 0.592 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.102 0.898 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.258 0.742 49 H 0.032 0.968 50 H 0.073 0.927 51 H 0.038 0.962 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 9.390 -19.047 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.278 5.278 3 C -0.071 4.071 4 C -0.069 4.069 5 N -0.269 5.269 6 C -0.120 4.120 7 C -0.022 4.022 8 H 0.086 0.914 9 C 0.022 3.978 10 N -0.379 5.379 11 C 0.395 3.605 12 O -0.526 6.526 13 N -0.363 5.363 14 C -0.008 4.008 15 C -0.161 4.161 16 C -0.142 4.142 17 C 0.021 3.979 18 H 0.004 0.996 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.553 5.553 23 Si 0.783 3.217 24 H -0.184 1.184 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.022 3.978 28 C -0.063 4.063 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.247 0.753 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.050 0.950 50 H 0.092 0.908 51 H 0.057 0.943 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.862 8.511 -19.076 25.070 hybrid contribution 0.775 -0.462 1.026 1.366 sum -13.087 8.050 -18.049 23.703 Atomic orbital electron populations 1.22388 0.85875 1.02437 1.01546 1.62175 1.09020 1.14355 1.42230 1.22234 0.94131 0.89021 1.01740 1.22229 0.94675 0.98877 0.91135 1.62102 1.08190 1.12889 1.43756 1.22317 0.86884 1.02509 1.00290 1.21839 0.95014 0.89315 0.96003 0.91374 1.21179 0.99770 0.94485 0.82323 1.44901 1.57821 1.30945 1.04193 1.16204 0.79625 0.83208 0.81499 1.90870 1.50014 1.25689 1.86035 1.47640 1.53822 1.26178 1.08687 1.21785 0.93553 0.83576 1.01916 1.21872 0.99801 0.98100 0.96303 1.21499 0.98723 0.97390 0.96543 1.18974 0.92577 0.91933 0.94432 0.99646 1.21556 1.28563 1.12668 0.94515 0.91975 1.25907 0.96514 0.96334 1.00327 1.70113 1.35679 1.18269 1.31239 0.85511 0.77872 0.78056 0.80254 1.18382 1.20922 1.20892 1.21628 0.94625 1.00824 0.80683 1.22134 0.92734 0.99224 0.92163 0.90126 0.91099 0.95323 0.94139 0.88611 0.88813 0.94099 0.90208 0.93325 0.94896 0.91809 0.93228 0.75262 0.88882 0.90532 0.93263 0.87982 0.92999 0.92478 0.93241 0.95011 0.90843 0.94339 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.63 127.69 1.23 1.52 16 2 N -0.55 -8.33 4.97 -921.92 -4.58 -12.91 16 3 C 0.06 0.75 5.62 86.31 0.48 1.23 16 4 C 0.06 0.84 5.62 86.31 0.48 1.33 16 5 N -0.54 -10.26 4.26 -896.54 -3.82 -14.07 16 6 C 0.03 0.57 9.04 127.69 1.15 1.73 16 7 C 0.09 1.73 2.22 44.93 0.10 1.83 16 8 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 9 C 0.15 4.00 4.63 86.38 0.40 4.40 16 10 N -0.72 -22.02 5.04 -478.54 -2.41 -24.43 16 11 C 0.69 29.74 8.30 179.06 1.49 31.23 16 12 O -0.64 -34.76 15.78 -4.00 -0.06 -34.82 16 13 N -0.63 -26.22 2.97 -836.05 -2.48 -28.70 16 14 C 0.11 3.39 6.43 86.36 0.56 3.95 16 15 C -0.12 -3.71 6.08 30.67 0.19 -3.53 16 16 C -0.10 -4.08 5.10 30.62 0.16 -3.92 16 17 C 0.04 2.07 2.26 -11.32 -0.03 2.05 16 18 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 19 C -0.53 -29.95 8.56 25.60 0.22 -29.73 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.49 5.30 84.66 0.45 0.94 16 22 N -0.91 -56.81 11.41 21.45 0.24 -56.57 16 23 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 C 0.15 7.52 5.42 86.51 0.47 7.99 16 28 C 0.07 1.15 4.79 86.31 0.41 1.56 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.80 8.07 -2.39 -0.02 0.78 16 31 H 0.03 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.05 1.30 6.58 -2.39 -0.02 1.28 16 38 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.55 6.77 -2.39 -0.02 1.53 16 41 H 0.41 10.46 4.73 -92.71 -0.44 10.02 16 42 H 0.09 2.18 5.57 -2.38 -0.01 2.17 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 49 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.07 4.56 5.17 -2.39 -0.01 4.55 16 51 H 0.04 0.72 7.09 -2.39 -0.02 0.70 16 52 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 Total: -1.00 -74.29 390.70 -2.87 -77.16 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.45 Total: 24.69 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 7.76 Total: 22.57 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -13.04 Total: -136.68 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.06 Total: -34.82 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -74.29 -2.87 -77.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595499955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.249 kcal (2) G-P(sol) polarization free energy of solvation -74.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds