Wall clock time and date at job start Fri Apr 10 2020 18:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46958 * 110.99831 * 2 1 4 4 C 1.53056 * 109.36331 * 183.18754 * 3 2 1 5 5 N 1.46952 * 109.36306 * 301.60025 * 4 3 2 6 6 C 1.46896 * 111.00017 * 183.18673 * 5 4 3 7 7 C 1.46958 * 110.88291 * 59.32135 * 5 4 3 8 8 H 1.09003 * 109.48943 * 60.64214 * 7 5 4 9 9 C 1.52999 * 109.49174 * 180.71114 * 7 5 4 10 10 N 1.46503 * 109.47105 * 54.11034 * 9 7 5 11 11 C 1.34778 * 120.00009 * 184.98237 * 10 9 7 12 12 O 1.21581 * 120.00069 * 355.01754 * 11 10 9 13 13 N 1.34771 * 119.99793 * 175.02398 * 11 10 9 14 14 C 1.46931 * 120.63294 * 5.11050 * 13 11 10 15 15 C 1.53187 * 108.77417 * 126.37338 * 14 13 11 16 16 C 1.53034 * 109.31685 * 54.63278 * 15 14 13 17 17 C 1.53039 * 109.53999 * 298.63802 * 16 15 14 18 18 H 1.09000 * 109.49538 * 301.37770 * 17 16 15 19 19 C 1.50701 * 109.49820 * 181.31497 * 17 16 15 20 20 H 1.08000 * 120.00239 * 0.02562 * 19 17 16 21 21 C 1.37880 * 119.99881 * 179.97438 * 19 17 16 22 22 N 1.31511 * 119.99837 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 120.00084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47402 * 89.99422 * 23 21 19 25 25 H 1.48494 * 109.47258 * 209.99797 * 23 21 19 26 26 H 1.48502 * 109.46835 * 329.99930 * 23 21 19 27 27 C 1.46931 * 120.63142 * 184.83364 * 13 11 10 28 28 C 1.46952 * 110.99817 * 123.80024 * 2 1 3 29 29 H 1.08992 * 109.46954 * 296.20086 * 1 2 3 30 30 H 1.08996 * 109.46734 * 176.19921 * 1 2 3 31 31 H 1.09002 * 109.46816 * 56.20009 * 1 2 3 32 32 H 1.09005 * 109.48986 * 303.15239 * 3 2 1 33 33 H 1.08996 * 109.49042 * 63.22026 * 3 2 1 34 34 H 1.08994 * 109.48757 * 181.63005 * 4 3 2 35 35 H 1.09002 * 109.50167 * 61.57933 * 4 3 2 36 36 H 1.09009 * 109.47393 * 300.80698 * 6 5 4 37 37 H 1.09001 * 109.47005 * 60.80031 * 6 5 4 38 38 H 1.08993 * 109.47781 * 180.80107 * 6 5 4 39 39 H 1.08992 * 109.46998 * 174.11083 * 9 7 5 40 40 H 1.08999 * 109.46997 * 294.11591 * 9 7 5 41 41 H 0.97001 * 119.99902 * 4.98324 * 10 9 7 42 42 H 1.09007 * 109.58389 * 246.16152 * 14 13 11 43 43 H 1.08995 * 109.58737 * 6.43753 * 14 13 11 44 44 H 1.09008 * 109.49780 * 174.58559 * 15 14 13 45 45 H 1.09001 * 109.49571 * 294.64632 * 15 14 13 46 46 H 1.09009 * 109.45794 * 58.65378 * 16 15 14 47 47 H 1.09001 * 109.46349 * 178.62505 * 16 15 14 48 48 H 0.97005 * 119.99540 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.57905 * 353.41534 * 27 13 11 50 50 H 1.08999 * 109.58548 * 113.83612 * 27 13 11 51 51 H 1.09001 * 109.48891 * 296.77984 * 28 2 1 52 52 H 1.08999 * 109.49074 * 56.82207 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5236 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5191 0.5659 1.0598 7 6 3.5235 -0.8061 1.0598 8 1 3.8254 -1.3115 0.1424 9 6 4.0770 -1.5653 2.2673 10 7 3.7905 -0.8123 3.4908 11 6 4.2735 -1.2402 4.6741 12 8 4.8695 -2.2978 4.7408 13 7 4.0956 -0.4958 5.7834 14 6 3.2827 0.7275 5.7417 15 6 2.2085 0.6429 6.8305 16 6 2.8768 0.3781 8.1815 17 6 3.6202 -0.9587 8.1316 18 1 2.9181 -1.7565 7.8892 19 6 4.2509 -1.2339 9.4723 20 1 4.1332 -0.5265 10.2799 21 6 4.9773 -2.3893 9.6683 22 7 5.1193 -3.2514 8.6854 23 14 5.7586 -2.7308 11.3303 24 1 4.8022 -3.4829 12.1817 25 1 6.9921 -3.5357 11.1415 26 1 6.1024 -1.4451 11.9891 27 6 4.7058 -0.8953 7.0589 28 6 1.9957 -0.7632 1.1401 29 1 -0.3633 0.4537 0.9220 30 1 -0.3633 -1.0254 -0.0681 31 1 -0.3633 0.5717 -0.8540 32 1 1.6014 1.9129 -0.8603 33 1 1.6938 1.8774 0.9173 34 1 3.9178 2.3448 -0.0512 35 1 3.8257 0.8482 -1.0107 36 1 5.8825 0.1251 0.1314 37 1 5.8824 1.5902 1.1422 38 1 5.8825 -0.0176 1.9056 39 1 3.6066 -2.5468 2.3261 40 1 5.1549 -1.6850 2.1583 41 1 3.2532 -0.0058 3.4494 42 1 3.9181 1.5947 5.9218 43 1 2.8090 0.8183 4.7643 44 1 1.6599 1.5839 6.8742 45 1 1.5195 -0.1695 6.5995 46 1 3.5836 1.1787 8.4001 47 1 2.1166 0.3418 8.9619 48 1 5.6301 -4.0644 8.8234 49 1 5.1687 -1.8763 6.9510 50 1 5.4596 -0.1631 7.3485 51 1 1.6938 -0.2821 2.0704 52 1 1.6010 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595499957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:13 Heat of formation + Delta-G solvation = -6.973069 kcal Electronic energy + Delta-G solvation = -29590.036951 eV Core-core repulsion = 25817.747261 eV Total energy + Delta-G solvation = -3772.289690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18422 -39.22673 -36.84622 -35.89105 -34.25255 -33.25946 -31.78547 -30.97311 -29.65875 -29.47992 -26.61643 -25.55394 -24.98186 -24.10912 -23.44353 -21.91006 -21.66946 -20.28919 -19.46862 -18.74071 -17.46099 -16.41369 -16.08634 -16.08024 -15.71333 -15.08506 -14.92035 -14.75623 -14.62618 -14.46958 -14.19433 -13.70281 -13.60735 -13.36825 -13.14120 -12.76513 -12.64883 -12.51796 -12.40550 -12.30945 -12.07422 -11.95181 -11.80787 -11.69887 -11.51250 -11.05240 -10.94063 -10.86286 -10.73029 -10.44248 -10.34356 -10.16772 -9.81011 -9.33922 -9.02758 -8.88581 -8.75565 -8.56110 -8.54206 -8.35358 -7.53219 -5.92469 -4.01732 3.30686 3.36440 3.41975 3.44216 3.58960 3.66364 3.97957 4.45949 4.49963 4.56961 4.64554 4.73820 4.94144 5.01304 5.04649 5.20499 5.22158 5.29464 5.36426 5.37922 5.38822 5.46380 5.54457 5.57782 5.57947 5.60598 5.67468 5.72739 5.75449 5.84541 5.95056 6.05447 6.23008 6.37560 6.61315 6.63815 6.65490 6.74072 6.79435 6.85163 6.88409 7.01394 7.06174 7.13809 7.45218 7.62180 7.83220 8.00970 8.14601 8.47724 8.73030 9.02029 9.39198 9.63501 11.12257 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.002991 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.387778 B = 9360.132622 C = 9794.107080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.055 3.945 4 C 0.057 3.943 5 N -0.537 5.537 6 C 0.022 3.978 7 C 0.075 3.925 8 H 0.064 0.936 9 C 0.147 3.853 10 N -0.745 5.745 11 C 0.699 3.301 12 O -0.587 6.587 13 N -0.623 5.623 14 C 0.119 3.881 15 C -0.133 4.133 16 C -0.109 4.109 17 C 0.039 3.961 18 H 0.028 0.972 19 C -0.521 4.521 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.130 3.870 28 C 0.061 3.939 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.025 0.975 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.263 0.737 49 H 0.123 0.877 50 H 0.037 0.963 51 H 0.045 0.955 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 10.658 -19.713 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.071 4.071 5 N -0.262 5.262 6 C -0.126 4.126 7 C -0.034 4.034 8 H 0.082 0.918 9 C 0.021 3.979 10 N -0.406 5.406 11 C 0.400 3.600 12 O -0.464 6.464 13 N -0.359 5.359 14 C -0.006 4.006 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.020 3.980 18 H 0.046 0.954 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.200 1.200 27 C 0.009 3.991 28 C -0.067 4.067 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.141 0.859 50 H 0.056 0.944 51 H 0.064 0.936 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.090 9.696 -19.707 22.792 hybrid contribution 0.104 0.255 0.826 0.871 sum -5.986 9.951 -18.881 22.166 Atomic orbital electron populations 1.22347 0.86965 1.02415 1.00591 1.62165 1.08010 1.13862 1.43011 1.22190 0.94591 0.89444 1.01109 1.22160 0.94300 0.98591 0.92032 1.62091 1.08403 1.13206 1.42538 1.22428 0.86608 1.02519 1.01032 1.21994 0.94406 0.89220 0.97770 0.91817 1.21096 1.00457 0.94220 0.82099 1.45168 1.59022 1.30982 1.05426 1.15972 0.80069 0.83643 0.80296 1.90921 1.48004 1.22530 1.84988 1.47738 1.53266 1.24924 1.09991 1.21440 0.93090 0.88068 0.97981 1.21944 0.97513 1.00569 0.97128 1.21606 0.98841 1.00263 0.93962 1.18902 0.93561 0.91492 0.94057 0.95422 1.21072 1.33265 1.05188 0.96464 0.92461 1.25059 0.96274 0.96109 0.96611 1.69908 1.40231 1.10447 1.30903 0.86615 0.78878 0.78241 0.84381 1.20758 1.21217 1.19960 1.22046 0.95979 1.02436 0.78619 1.22216 0.93654 0.98922 0.91910 0.95379 0.91219 0.91402 0.90360 0.93830 0.90161 0.94010 0.95599 0.91361 0.90337 0.91473 0.91453 0.76693 0.92363 0.92214 0.92498 0.92316 0.93250 0.93181 0.92715 0.85945 0.94446 0.93635 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.60 60.07 0.58 0.76 16 2 N -0.55 -4.90 4.97 -242.75 -1.21 -6.10 16 3 C 0.05 0.44 5.62 -3.76 -0.02 0.42 16 4 C 0.06 0.47 5.62 -3.77 -0.02 0.45 16 5 N -0.54 -5.29 4.26 -234.73 -1.00 -6.29 16 6 C 0.02 0.21 9.27 60.06 0.56 0.77 16 7 C 0.08 0.78 2.22 -67.65 -0.15 0.63 16 8 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 9 C 0.15 1.95 4.63 -4.04 -0.02 1.93 16 10 N -0.75 -11.44 5.04 -65.23 -0.33 -11.77 16 11 C 0.70 14.57 8.30 -86.92 -0.72 13.85 16 12 O -0.59 -15.01 15.77 5.29 0.08 -14.93 16 13 N -0.62 -12.89 2.98 -178.76 -0.53 -13.42 16 14 C 0.12 1.91 6.39 -3.71 -0.02 1.89 16 15 C -0.13 -2.21 6.08 -26.62 -0.16 -2.37 16 16 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 17 C 0.04 0.99 2.24 -91.88 -0.21 0.78 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 19 C -0.52 -14.35 8.56 -34.44 -0.29 -14.64 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -26.08 11.39 55.43 0.63 -25.45 16 23 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.13 3.23 5.39 -3.93 -0.02 3.21 16 28 C 0.06 0.61 4.80 -3.77 -0.02 0.59 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.23 8.14 -51.92 -0.42 -0.19 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.92 6.13 -51.93 -0.32 0.60 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.95 6.60 -51.93 -0.34 0.61 16 41 H 0.40 5.42 4.76 -40.82 -0.19 5.22 16 42 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 43 H 0.06 0.81 5.64 -51.93 -0.29 0.51 16 44 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.12 3.58 5.11 -51.93 -0.27 3.31 16 50 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.05 0.50 7.10 -51.93 -0.37 0.13 16 52 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -32.09 390.45 -11.60 -43.69 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -9.35 Total: 4.27 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.75 Total: 7.59 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -2.43 Total: -63.03 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.08 Total: -14.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.09 -11.60 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595499957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.717 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds