Wall clock time and date at job start Fri Apr 10 2020 18:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46958 * 110.99831 * 2 1 4 4 C 1.53056 * 109.36331 * 183.18754 * 3 2 1 5 5 N 1.46952 * 109.36306 * 301.60025 * 4 3 2 6 6 C 1.46896 * 111.00017 * 183.18673 * 5 4 3 7 7 C 1.46958 * 110.88291 * 59.32135 * 5 4 3 8 8 H 1.09003 * 109.48943 * 60.64214 * 7 5 4 9 9 C 1.52999 * 109.49174 * 180.71114 * 7 5 4 10 10 N 1.46503 * 109.47105 * 54.11034 * 9 7 5 11 11 C 1.34778 * 120.00009 * 184.98237 * 10 9 7 12 12 O 1.21581 * 120.00069 * 355.01754 * 11 10 9 13 13 N 1.34771 * 119.99793 * 175.02398 * 11 10 9 14 14 C 1.46931 * 120.63294 * 5.11050 * 13 11 10 15 15 C 1.53187 * 108.77417 * 126.37338 * 14 13 11 16 16 C 1.53034 * 109.31685 * 54.63278 * 15 14 13 17 17 C 1.53039 * 109.53999 * 298.63802 * 16 15 14 18 18 H 1.09000 * 109.49538 * 301.37770 * 17 16 15 19 19 C 1.50701 * 109.49820 * 181.31497 * 17 16 15 20 20 H 1.08000 * 120.00239 * 0.02562 * 19 17 16 21 21 C 1.37880 * 119.99881 * 179.97438 * 19 17 16 22 22 N 1.31511 * 119.99837 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 120.00084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47402 * 89.99422 * 23 21 19 25 25 H 1.48494 * 109.47258 * 209.99797 * 23 21 19 26 26 H 1.48502 * 109.46835 * 329.99930 * 23 21 19 27 27 C 1.46931 * 120.63142 * 184.83364 * 13 11 10 28 28 C 1.46952 * 110.99817 * 123.80024 * 2 1 3 29 29 H 1.08992 * 109.46954 * 296.20086 * 1 2 3 30 30 H 1.08996 * 109.46734 * 176.19921 * 1 2 3 31 31 H 1.09002 * 109.46816 * 56.20009 * 1 2 3 32 32 H 1.09005 * 109.48986 * 303.15239 * 3 2 1 33 33 H 1.08996 * 109.49042 * 63.22026 * 3 2 1 34 34 H 1.08994 * 109.48757 * 181.63005 * 4 3 2 35 35 H 1.09002 * 109.50167 * 61.57933 * 4 3 2 36 36 H 1.09009 * 109.47393 * 300.80698 * 6 5 4 37 37 H 1.09001 * 109.47005 * 60.80031 * 6 5 4 38 38 H 1.08993 * 109.47781 * 180.80107 * 6 5 4 39 39 H 1.08992 * 109.46998 * 174.11083 * 9 7 5 40 40 H 1.08999 * 109.46997 * 294.11591 * 9 7 5 41 41 H 0.97001 * 119.99902 * 4.98324 * 10 9 7 42 42 H 1.09007 * 109.58389 * 246.16152 * 14 13 11 43 43 H 1.08995 * 109.58737 * 6.43753 * 14 13 11 44 44 H 1.09008 * 109.49780 * 174.58559 * 15 14 13 45 45 H 1.09001 * 109.49571 * 294.64632 * 15 14 13 46 46 H 1.09009 * 109.45794 * 58.65378 * 16 15 14 47 47 H 1.09001 * 109.46349 * 178.62505 * 16 15 14 48 48 H 0.97005 * 119.99540 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.57905 * 353.41534 * 27 13 11 50 50 H 1.08999 * 109.58548 * 113.83612 * 27 13 11 51 51 H 1.09001 * 109.48891 * 296.77984 * 28 2 1 52 52 H 1.08999 * 109.49074 * 56.82207 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5236 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5191 0.5659 1.0598 7 6 3.5235 -0.8061 1.0598 8 1 3.8254 -1.3115 0.1424 9 6 4.0770 -1.5653 2.2673 10 7 3.7905 -0.8123 3.4908 11 6 4.2735 -1.2402 4.6741 12 8 4.8695 -2.2978 4.7408 13 7 4.0956 -0.4958 5.7834 14 6 3.2827 0.7275 5.7417 15 6 2.2085 0.6429 6.8305 16 6 2.8768 0.3781 8.1815 17 6 3.6202 -0.9587 8.1316 18 1 2.9181 -1.7565 7.8892 19 6 4.2509 -1.2339 9.4723 20 1 4.1332 -0.5265 10.2799 21 6 4.9773 -2.3893 9.6683 22 7 5.1193 -3.2514 8.6854 23 14 5.7586 -2.7308 11.3303 24 1 4.8022 -3.4829 12.1817 25 1 6.9921 -3.5357 11.1415 26 1 6.1024 -1.4451 11.9891 27 6 4.7058 -0.8953 7.0589 28 6 1.9957 -0.7632 1.1401 29 1 -0.3633 0.4537 0.9220 30 1 -0.3633 -1.0254 -0.0681 31 1 -0.3633 0.5717 -0.8540 32 1 1.6014 1.9129 -0.8603 33 1 1.6938 1.8774 0.9173 34 1 3.9178 2.3448 -0.0512 35 1 3.8257 0.8482 -1.0107 36 1 5.8825 0.1251 0.1314 37 1 5.8824 1.5902 1.1422 38 1 5.8825 -0.0176 1.9056 39 1 3.6066 -2.5468 2.3261 40 1 5.1549 -1.6850 2.1583 41 1 3.2532 -0.0058 3.4494 42 1 3.9181 1.5947 5.9218 43 1 2.8090 0.8183 4.7643 44 1 1.6599 1.5839 6.8742 45 1 1.5195 -0.1695 6.5995 46 1 3.5836 1.1787 8.4001 47 1 2.1166 0.3418 8.9619 48 1 5.6301 -4.0644 8.8234 49 1 5.1687 -1.8763 6.9510 50 1 5.4596 -0.1631 7.3485 51 1 1.6938 -0.2821 2.0704 52 1 1.6010 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595499957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:12 Heat of formation + Delta-G solvation = -30.413104 kcal Electronic energy + Delta-G solvation = -29591.053387 eV Core-core repulsion = 25817.747261 eV Total energy + Delta-G solvation = -3773.306127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43364 -40.40773 -38.46156 -36.77815 -35.60430 -35.07362 -33.46700 -32.10915 -31.37566 -30.20664 -27.77808 -26.89672 -26.25108 -25.66872 -24.18659 -23.44564 -22.67072 -21.80098 -20.54067 -20.26397 -19.06191 -18.21218 -17.37229 -17.05906 -16.77946 -16.52644 -16.07460 -15.93555 -15.72344 -15.58784 -15.20222 -15.13419 -14.96537 -14.80661 -14.49344 -14.25243 -14.23149 -13.64052 -13.51288 -13.40544 -13.17896 -13.07917 -12.87305 -12.77760 -12.65694 -12.39752 -12.27789 -12.25087 -12.21091 -11.85626 -11.76921 -11.61497 -11.55972 -11.19173 -10.93265 -10.80067 -10.49311 -10.08177 -9.44567 -9.27472 -9.19521 -8.07497 -6.25335 1.41377 1.42507 1.53395 1.85449 2.30560 2.43604 2.83165 2.91575 3.14182 3.23418 3.67854 3.82198 4.00944 4.05791 4.16713 4.19594 4.25883 4.30518 4.39473 4.51510 4.53592 4.61214 4.62838 4.64888 4.66224 4.73886 4.75211 4.78420 4.83045 4.86600 4.89464 4.99644 5.04228 5.06424 5.09260 5.11433 5.28005 5.29012 5.34485 5.57378 5.60424 5.68684 5.91645 5.92723 5.94014 6.01860 6.11655 6.14847 6.22671 6.39308 6.88135 7.20827 7.44552 7.75880 8.95443 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.002991 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.387778 B = 9360.132622 C = 9794.107080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.055 3.945 4 C 0.059 3.941 5 N -0.544 5.544 6 C 0.026 3.974 7 C 0.088 3.912 8 H 0.069 0.931 9 C 0.147 3.853 10 N -0.719 5.719 11 C 0.693 3.307 12 O -0.643 6.643 13 N -0.627 5.627 14 C 0.115 3.885 15 C -0.125 4.125 16 C -0.103 4.103 17 C 0.038 3.962 18 H -0.017 1.017 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.008 3.992 22 N -0.914 5.914 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.261 1.261 27 C 0.145 3.855 28 C 0.065 3.935 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.408 0.592 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.259 0.741 49 H 0.075 0.925 50 H 0.033 0.967 51 H 0.037 0.963 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 13.558 -20.755 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.073 4.073 4 C -0.068 4.068 5 N -0.269 5.269 6 C -0.122 4.122 7 C -0.021 4.021 8 H 0.087 0.913 9 C 0.022 3.978 10 N -0.379 5.379 11 C 0.394 3.606 12 O -0.525 6.525 13 N -0.363 5.363 14 C -0.007 4.007 15 C -0.163 4.163 16 C -0.141 4.141 17 C 0.019 3.981 18 H 0.001 0.999 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.552 5.552 23 Si 0.783 3.217 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.185 1.185 27 C 0.022 3.978 28 C -0.064 4.064 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.247 0.753 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.093 0.907 50 H 0.051 0.949 51 H 0.055 0.945 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.368 12.668 -20.785 25.431 hybrid contribution 0.456 -0.629 1.089 1.338 sum -6.912 12.039 -19.695 24.096 Atomic orbital electron populations 1.22389 0.85982 1.02771 1.01147 1.62183 1.08948 1.14424 1.42154 1.22251 0.94334 0.88941 1.01728 1.22222 0.94512 0.98984 0.91126 1.62105 1.08433 1.12663 1.43742 1.22361 0.86648 1.02840 1.00339 1.21804 0.94770 0.89500 0.96007 0.91329 1.21193 1.00034 0.94286 0.82294 1.44907 1.57692 1.31011 1.04253 1.16206 0.79864 0.83016 0.81504 1.90882 1.50504 1.25120 1.85952 1.47637 1.53690 1.26408 1.08585 1.21759 0.92845 0.86343 0.99743 1.21901 0.97299 1.02486 0.94633 1.21492 0.98735 0.97265 0.96625 1.18833 0.93041 0.93020 0.93232 0.99869 1.21517 1.32976 1.05250 0.97695 0.91939 1.25920 0.96948 0.96040 1.00193 1.70118 1.41193 1.10820 1.33113 0.85556 0.77732 0.78449 0.79928 1.20155 1.21394 1.18530 1.21448 0.95793 0.99877 0.80680 1.22130 0.93044 0.99119 0.92093 0.95510 0.91190 0.89970 0.88581 0.94199 0.88634 0.94080 0.94838 0.90170 0.92802 0.92393 0.92510 0.75274 0.90430 0.88984 0.87866 0.93414 0.92364 0.93014 0.93230 0.90690 0.94895 0.94490 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.60 127.69 1.23 1.54 16 2 N -0.55 -8.58 4.97 -921.91 -4.58 -13.16 16 3 C 0.06 0.72 5.62 86.31 0.49 1.21 16 4 C 0.06 0.80 5.62 86.31 0.49 1.29 16 5 N -0.54 -9.61 4.26 -896.54 -3.81 -13.42 16 6 C 0.03 0.47 9.27 127.69 1.18 1.65 16 7 C 0.09 1.73 2.22 44.92 0.10 1.82 16 8 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 9 C 0.15 3.94 4.63 86.38 0.40 4.34 16 10 N -0.72 -21.88 5.04 -478.55 -2.41 -24.29 16 11 C 0.69 29.67 8.30 179.06 1.49 31.16 16 12 O -0.64 -34.81 15.77 -3.97 -0.06 -34.87 16 13 N -0.63 -26.20 2.98 -837.75 -2.50 -28.70 16 14 C 0.12 3.44 6.39 86.36 0.55 3.99 16 15 C -0.13 -3.80 6.08 30.67 0.19 -3.62 16 16 C -0.10 -4.08 5.11 30.62 0.16 -3.92 16 17 C 0.04 1.98 2.24 -11.61 -0.03 1.95 16 18 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 19 C -0.54 -30.12 8.56 25.60 0.22 -29.90 16 20 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 21 C 0.01 0.48 5.30 84.66 0.45 0.93 16 22 N -0.91 -57.03 11.39 21.45 0.24 -56.78 16 23 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.14 7.50 5.39 86.22 0.46 7.96 16 28 C 0.06 1.18 4.80 86.31 0.41 1.59 16 29 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.10 0.93 8.13 -2.38 -0.02 0.91 16 33 H 0.04 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.25 6.13 -2.39 -0.01 1.23 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.67 6.60 -2.39 -0.02 1.65 16 41 H 0.41 10.41 4.76 -92.71 -0.44 9.97 16 42 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.09 2.15 5.64 -2.39 -0.01 2.14 16 44 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 48 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 49 H 0.07 4.66 5.11 -2.39 -0.01 4.65 16 50 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.04 0.73 7.10 -2.39 -0.02 0.72 16 52 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -74.59 390.45 -2.87 -77.45 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.44 Total: 24.66 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 7.78 Total: 22.01 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -13.05 Total: -136.34 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.06 Total: -34.87 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.59 -2.87 -77.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595499957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.038 kcal (2) G-P(sol) polarization free energy of solvation -74.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds