Wall clock time and date at job start Fri Apr 10 2020 18:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46948 * 111.00220 * 2 1 4 4 C 1.53057 * 109.36773 * 176.81438 * 3 2 1 5 5 N 1.46955 * 109.36023 * 58.40229 * 4 3 2 6 6 C 1.46902 * 110.99419 * 176.81425 * 5 4 3 7 7 C 1.46954 * 110.88325 * 300.67950 * 5 4 3 8 8 H 1.09007 * 109.48786 * 299.33571 * 7 5 4 9 9 C 1.52996 * 109.48962 * 179.29300 * 7 5 4 10 10 N 1.46504 * 109.47095 * 305.64957 * 9 7 5 11 11 C 1.34777 * 120.00150 * 175.01686 * 10 9 7 12 12 O 1.21591 * 119.99631 * 4.97421 * 11 10 9 13 13 N 1.34772 * 120.00122 * 184.97790 * 11 10 9 14 14 C 1.46926 * 120.63065 * 354.79484 * 13 11 10 15 15 C 1.53194 * 108.77542 * 233.58592 * 14 13 11 16 16 C 1.53034 * 109.31223 * 305.36450 * 15 14 13 17 17 C 1.53040 * 109.54145 * 61.36337 * 16 15 14 18 18 H 1.09000 * 109.49326 * 58.58546 * 17 16 15 19 19 C 1.50701 * 109.50108 * 178.64938 * 17 16 15 20 20 H 1.07994 * 119.99695 * 0.02562 * 19 17 16 21 21 C 1.37879 * 119.99959 * 180.02562 * 19 17 16 22 22 N 1.31510 * 120.00013 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 119.99855 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47065 * 59.99907 * 23 21 19 25 25 H 1.48498 * 109.46854 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46776 * 299.99961 * 23 21 19 27 27 C 1.46924 * 120.63020 * 174.51397 * 13 11 10 28 28 C 1.46959 * 110.99745 * 236.18097 * 2 1 3 29 29 H 1.08999 * 109.47002 * 63.95280 * 1 2 3 30 30 H 1.09001 * 109.47248 * 183.95399 * 1 2 3 31 31 H 1.08997 * 109.46814 * 303.95000 * 1 2 3 32 32 H 1.09006 * 109.48938 * 56.84401 * 3 2 1 33 33 H 1.09002 * 109.51329 * 296.79338 * 3 2 1 34 34 H 1.09000 * 109.48334 * 298.43604 * 4 3 2 35 35 H 1.09001 * 109.50463 * 178.38014 * 4 3 2 36 36 H 1.09006 * 109.47147 * 188.95715 * 6 5 4 37 37 H 1.08999 * 109.47374 * 308.95500 * 6 5 4 38 38 H 1.08997 * 109.47197 * 68.95440 * 6 5 4 39 39 H 1.09003 * 109.47220 * 185.65363 * 9 7 5 40 40 H 1.08994 * 109.47238 * 65.64946 * 9 7 5 41 41 H 0.97002 * 119.99438 * 355.01282 * 10 9 7 42 42 H 1.08998 * 109.58743 * 353.37226 * 14 13 11 43 43 H 1.08994 * 109.59011 * 113.79518 * 14 13 11 44 44 H 1.09002 * 109.49466 * 65.31809 * 15 14 13 45 45 H 1.08997 * 109.49912 * 185.40939 * 15 14 13 46 46 H 1.09002 * 109.45997 * 181.38819 * 16 15 14 47 47 H 1.09003 * 109.46098 * 301.36065 * 16 15 14 48 48 H 0.97000 * 120.00175 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.58308 * 246.20065 * 27 13 11 50 50 H 1.09000 * 109.58678 * 6.62858 * 27 13 11 51 51 H 1.09006 * 109.47136 * 63.20823 * 28 2 1 52 52 H 1.09004 * 109.50988 * 303.14720 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0802 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0599 7 6 3.5234 -0.8061 -1.0600 8 1 3.8257 -1.3117 -0.1428 9 6 4.0769 -1.5653 -2.2675 10 7 3.7854 -0.8150 -3.4916 11 6 4.2673 -1.2429 -4.6752 12 8 4.8669 -2.2986 -4.7416 13 7 4.0847 -0.5007 -5.7853 14 6 3.2663 0.7187 -5.7441 15 6 2.1918 0.6284 -6.8323 16 6 2.8607 0.3656 -8.1834 17 6 3.6103 -0.9677 -8.1329 18 1 2.9121 -1.7684 -7.8889 19 6 4.2409 -1.2414 -9.4739 20 1 4.1198 -0.5350 -10.2818 21 6 4.9724 -2.3936 -9.6694 22 7 5.1203 -3.2535 -8.6854 23 14 5.7547 -2.7326 -11.3315 24 1 6.7075 -1.6424 -11.6617 25 1 6.4818 -4.0265 -11.2817 26 1 4.6973 -2.7980 -12.3721 27 6 4.7054 -0.8924 -7.0581 28 6 1.9956 -0.7636 -1.1399 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5739 0.8525 32 1 1.6014 1.9128 0.8603 33 1 1.6938 1.8778 -0.9171 34 1 3.8254 0.8478 1.0105 35 1 3.9181 2.3447 0.0514 36 1 5.8824 0.1341 -1.9926 37 1 5.8824 1.5893 -0.9675 38 1 5.8824 -0.0259 -0.2198 39 1 3.6095 -2.5484 -2.3240 40 1 5.1554 -1.6813 -2.1606 41 1 3.2455 -0.0102 -3.4501 42 1 2.7906 0.8068 -4.7674 43 1 3.8974 1.5887 -5.9251 44 1 1.5070 -0.1874 -6.6005 45 1 1.6388 1.5666 -6.8764 46 1 2.1002 0.3254 -8.9634 47 1 3.5638 1.1691 -8.4029 48 1 5.6346 -4.0644 -8.8230 49 1 5.4515 -0.1510 -7.3441 50 1 5.1795 -1.8677 -6.9486 51 1 1.6933 -0.2826 -2.0702 52 1 1.6016 -1.7795 -1.1107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595499960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:15 Heat of formation + Delta-G solvation = -7.681695 kcal Electronic energy + Delta-G solvation = -29586.815269 eV Core-core repulsion = 25814.494850 eV Total energy + Delta-G solvation = -3772.320419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17803 -39.21929 -36.82269 -35.88590 -34.25248 -33.24354 -31.78378 -30.97387 -29.63808 -29.47272 -26.60970 -25.54764 -24.97796 -24.09668 -23.44450 -21.91403 -21.67258 -20.28089 -19.47028 -18.74801 -17.46116 -16.40203 -16.07331 -16.06384 -15.71247 -15.07943 -14.92083 -14.75912 -14.62358 -14.47112 -14.19226 -13.69880 -13.60111 -13.36121 -13.11645 -12.76404 -12.64047 -12.50736 -12.42755 -12.32365 -12.07637 -11.95433 -11.80960 -11.67527 -11.51280 -11.06208 -10.93456 -10.85065 -10.74420 -10.47295 -10.34314 -10.16845 -9.80326 -9.33622 -9.02638 -8.88728 -8.75227 -8.56390 -8.53843 -8.35500 -7.52627 -5.91935 -4.01219 3.31395 3.37327 3.41871 3.43220 3.58932 3.66306 3.98022 4.46258 4.50028 4.56941 4.64313 4.74330 4.94181 5.00978 5.04629 5.19876 5.22395 5.30925 5.35764 5.36835 5.38639 5.46149 5.54655 5.57808 5.58141 5.60802 5.68354 5.74385 5.75780 5.85238 5.92868 6.05441 6.23183 6.37604 6.61345 6.63808 6.65077 6.74005 6.79490 6.85017 6.88401 7.01518 7.06121 7.14265 7.43929 7.61797 7.83333 8.01084 8.13943 8.47843 8.73120 9.02182 9.39321 9.63849 11.12832 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.002991 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.901128 B = 9359.354164 C = 9797.386801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.055 3.945 4 C 0.057 3.943 5 N -0.537 5.537 6 C 0.024 3.976 7 C 0.076 3.924 8 H 0.064 0.936 9 C 0.148 3.852 10 N -0.745 5.745 11 C 0.699 3.301 12 O -0.587 6.587 13 N -0.623 5.623 14 C 0.119 3.881 15 C -0.133 4.133 16 C -0.109 4.109 17 C 0.041 3.959 18 H 0.028 0.972 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.063 3.937 22 N -0.877 5.877 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.130 3.870 28 C 0.061 3.939 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.263 0.737 49 H 0.037 0.963 50 H 0.122 0.878 51 H 0.045 0.955 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 10.683 19.744 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.071 4.071 5 N -0.263 5.263 6 C -0.124 4.124 7 C -0.033 4.033 8 H 0.082 0.918 9 C 0.022 3.978 10 N -0.406 5.406 11 C 0.400 3.600 12 O -0.464 6.464 13 N -0.359 5.359 14 C -0.006 4.006 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.021 3.979 18 H 0.046 0.954 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.204 1.204 27 C 0.009 3.991 28 C -0.067 4.067 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.140 0.860 51 H 0.064 0.936 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.093 9.715 19.739 22.829 hybrid contribution 0.118 0.268 -0.831 0.881 sum -5.975 9.983 18.909 22.201 Atomic orbital electron populations 1.22346 0.86962 1.02421 1.00586 1.62155 1.08010 1.13857 1.43031 1.22188 0.94594 0.89439 1.01110 1.22169 0.94313 0.98540 0.92090 1.62099 1.08398 1.13251 1.42508 1.22405 0.86597 1.01778 1.01645 1.22004 0.94399 0.89155 0.97789 0.91810 1.21081 1.00443 0.94229 0.82066 1.45172 1.58855 1.31197 1.05377 1.15980 0.80072 0.83658 0.80286 1.90924 1.47863 1.22637 1.85013 1.47737 1.52762 1.25370 1.10073 1.21440 0.93003 0.88127 0.97994 1.21946 0.97503 1.00567 0.97136 1.21609 0.98831 1.00283 0.93965 1.19044 0.93373 0.91480 0.93978 0.95353 1.21042 1.33190 1.05415 0.96471 0.92530 1.25054 0.96269 0.96089 0.96592 1.69900 1.39960 1.10674 1.30934 0.86681 0.79454 0.77482 0.84495 1.20300 1.21299 1.20356 1.22221 0.95903 1.02291 0.78644 1.22218 0.93658 0.98920 0.91910 0.95379 0.91219 0.91404 0.90366 0.93833 0.94029 0.90157 0.90429 0.91478 0.95503 0.91493 0.91499 0.76709 0.92216 0.92361 0.92310 0.92503 0.93187 0.93263 0.92661 0.94440 0.86029 0.93635 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.07 0.58 0.76 16 2 N -0.55 -4.90 4.97 -242.75 -1.21 -6.10 16 3 C 0.05 0.44 5.62 -3.77 -0.02 0.42 16 4 C 0.06 0.47 5.61 -3.76 -0.02 0.45 16 5 N -0.54 -5.29 4.27 -234.73 -1.00 -6.29 16 6 C 0.02 0.23 9.01 60.07 0.54 0.77 16 7 C 0.08 0.78 2.21 -67.66 -0.15 0.63 16 8 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 9 C 0.15 1.96 4.63 -4.04 -0.02 1.94 16 10 N -0.75 -11.45 5.04 -65.23 -0.33 -11.78 16 11 C 0.70 14.57 8.29 -86.92 -0.72 13.85 16 12 O -0.59 -15.02 15.77 5.29 0.08 -14.93 16 13 N -0.62 -12.89 2.97 -178.23 -0.53 -13.41 16 14 C 0.12 1.92 6.39 -3.71 -0.02 1.89 16 15 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 16 C -0.11 -2.22 5.10 -26.69 -0.14 -2.35 16 17 C 0.04 1.02 2.26 -91.43 -0.21 0.82 16 18 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.52 -14.39 8.56 -34.44 -0.29 -14.69 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 22 N -0.88 -26.09 11.41 55.43 0.63 -25.46 16 23 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.13 3.24 5.44 -3.49 -0.02 3.22 16 28 C 0.06 0.61 4.80 -3.77 -0.02 0.59 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 32 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.08 0.91 6.69 -51.93 -0.35 0.57 16 37 H 0.07 0.57 8.05 -51.93 -0.42 0.16 16 38 H 0.03 0.24 8.13 -51.93 -0.42 -0.18 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.95 6.81 -51.93 -0.35 0.60 16 41 H 0.40 5.42 4.76 -40.82 -0.19 5.22 16 42 H 0.06 0.81 5.65 -51.93 -0.29 0.51 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.12 3.55 5.14 -51.93 -0.27 3.28 16 51 H 0.05 0.50 7.08 -51.93 -0.37 0.13 16 52 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -32.09 390.86 -11.63 -43.73 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -9.39 Total: 4.21 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.77 Total: 7.61 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -2.43 Total: -63.04 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.08 Total: -14.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.09 -11.63 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595499960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.045 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds