Wall clock time and date at job start Fri Apr 10 2020 18:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46948 * 111.00220 * 2 1 4 4 C 1.53057 * 109.36773 * 176.81438 * 3 2 1 5 5 N 1.46955 * 109.36023 * 58.40229 * 4 3 2 6 6 C 1.46902 * 110.99419 * 176.81425 * 5 4 3 7 7 C 1.46954 * 110.88325 * 300.67950 * 5 4 3 8 8 H 1.09007 * 109.48786 * 299.33571 * 7 5 4 9 9 C 1.52996 * 109.48962 * 179.29300 * 7 5 4 10 10 N 1.46504 * 109.47095 * 305.64957 * 9 7 5 11 11 C 1.34777 * 120.00150 * 175.01686 * 10 9 7 12 12 O 1.21591 * 119.99631 * 4.97421 * 11 10 9 13 13 N 1.34772 * 120.00122 * 184.97790 * 11 10 9 14 14 C 1.46926 * 120.63065 * 354.79484 * 13 11 10 15 15 C 1.53194 * 108.77542 * 233.58592 * 14 13 11 16 16 C 1.53034 * 109.31223 * 305.36450 * 15 14 13 17 17 C 1.53040 * 109.54145 * 61.36337 * 16 15 14 18 18 H 1.09000 * 109.49326 * 58.58546 * 17 16 15 19 19 C 1.50701 * 109.50108 * 178.64938 * 17 16 15 20 20 H 1.07994 * 119.99695 * 0.02562 * 19 17 16 21 21 C 1.37879 * 119.99959 * 180.02562 * 19 17 16 22 22 N 1.31510 * 120.00013 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 119.99855 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47065 * 59.99907 * 23 21 19 25 25 H 1.48498 * 109.46854 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46776 * 299.99961 * 23 21 19 27 27 C 1.46924 * 120.63020 * 174.51397 * 13 11 10 28 28 C 1.46959 * 110.99745 * 236.18097 * 2 1 3 29 29 H 1.08999 * 109.47002 * 63.95280 * 1 2 3 30 30 H 1.09001 * 109.47248 * 183.95399 * 1 2 3 31 31 H 1.08997 * 109.46814 * 303.95000 * 1 2 3 32 32 H 1.09006 * 109.48938 * 56.84401 * 3 2 1 33 33 H 1.09002 * 109.51329 * 296.79338 * 3 2 1 34 34 H 1.09000 * 109.48334 * 298.43604 * 4 3 2 35 35 H 1.09001 * 109.50463 * 178.38014 * 4 3 2 36 36 H 1.09006 * 109.47147 * 188.95715 * 6 5 4 37 37 H 1.08999 * 109.47374 * 308.95500 * 6 5 4 38 38 H 1.08997 * 109.47197 * 68.95440 * 6 5 4 39 39 H 1.09003 * 109.47220 * 185.65363 * 9 7 5 40 40 H 1.08994 * 109.47238 * 65.64946 * 9 7 5 41 41 H 0.97002 * 119.99438 * 355.01282 * 10 9 7 42 42 H 1.08998 * 109.58743 * 353.37226 * 14 13 11 43 43 H 1.08994 * 109.59011 * 113.79518 * 14 13 11 44 44 H 1.09002 * 109.49466 * 65.31809 * 15 14 13 45 45 H 1.08997 * 109.49912 * 185.40939 * 15 14 13 46 46 H 1.09002 * 109.45997 * 181.38819 * 16 15 14 47 47 H 1.09003 * 109.46098 * 301.36065 * 16 15 14 48 48 H 0.97000 * 120.00175 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.58308 * 246.20065 * 27 13 11 50 50 H 1.09000 * 109.58678 * 6.62858 * 27 13 11 51 51 H 1.09006 * 109.47136 * 63.20823 * 28 2 1 52 52 H 1.09004 * 109.50988 * 303.14720 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0802 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0599 7 6 3.5234 -0.8061 -1.0600 8 1 3.8257 -1.3117 -0.1428 9 6 4.0769 -1.5653 -2.2675 10 7 3.7854 -0.8150 -3.4916 11 6 4.2673 -1.2429 -4.6752 12 8 4.8669 -2.2986 -4.7416 13 7 4.0847 -0.5007 -5.7853 14 6 3.2663 0.7187 -5.7441 15 6 2.1918 0.6284 -6.8323 16 6 2.8607 0.3656 -8.1834 17 6 3.6103 -0.9677 -8.1329 18 1 2.9121 -1.7684 -7.8889 19 6 4.2409 -1.2414 -9.4739 20 1 4.1198 -0.5350 -10.2818 21 6 4.9724 -2.3936 -9.6694 22 7 5.1203 -3.2535 -8.6854 23 14 5.7547 -2.7326 -11.3315 24 1 6.7075 -1.6424 -11.6617 25 1 6.4818 -4.0265 -11.2817 26 1 4.6973 -2.7980 -12.3721 27 6 4.7054 -0.8924 -7.0581 28 6 1.9956 -0.7636 -1.1399 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5739 0.8525 32 1 1.6014 1.9128 0.8603 33 1 1.6938 1.8778 -0.9171 34 1 3.8254 0.8478 1.0105 35 1 3.9181 2.3447 0.0514 36 1 5.8824 0.1341 -1.9926 37 1 5.8824 1.5893 -0.9675 38 1 5.8824 -0.0259 -0.2198 39 1 3.6095 -2.5484 -2.3240 40 1 5.1554 -1.6813 -2.1606 41 1 3.2455 -0.0102 -3.4501 42 1 2.7906 0.8068 -4.7674 43 1 3.8974 1.5887 -5.9251 44 1 1.5070 -0.1874 -6.6005 45 1 1.6388 1.5666 -6.8764 46 1 2.1002 0.3254 -8.9634 47 1 3.5638 1.1691 -8.4029 48 1 5.6346 -4.0644 -8.8230 49 1 5.4515 -0.1510 -7.3441 50 1 5.1795 -1.8677 -6.9486 51 1 1.6933 -0.2826 -2.0702 52 1 1.6016 -1.7795 -1.1107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595499960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:14 Heat of formation + Delta-G solvation = -31.123734 kcal Electronic energy + Delta-G solvation = -29587.831792 eV Core-core repulsion = 25814.494850 eV Total energy + Delta-G solvation = -3773.336942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42532 -40.40139 -38.43702 -36.77185 -35.60019 -35.06822 -33.46622 -32.10588 -31.35163 -30.20621 -27.77143 -26.89264 -26.24663 -25.65274 -24.18846 -23.44807 -22.67825 -21.79310 -20.54944 -20.26615 -19.06095 -18.20245 -17.36968 -17.03124 -16.77472 -16.52501 -16.07703 -15.93295 -15.72495 -15.58994 -15.20195 -15.12945 -14.95229 -14.79985 -14.49292 -14.24170 -14.21946 -13.62461 -13.50426 -13.41060 -13.18385 -13.11416 -12.83989 -12.78471 -12.67182 -12.37847 -12.28129 -12.26446 -12.22837 -11.85644 -11.77944 -11.60911 -11.56828 -11.18887 -10.92772 -10.80570 -10.49256 -10.08256 -9.44517 -9.27364 -9.19107 -8.07098 -6.24923 1.41796 1.43670 1.51978 1.85619 2.30575 2.43854 2.83091 2.91558 3.14211 3.23512 3.68018 3.82060 4.01486 4.06222 4.16784 4.19871 4.25623 4.30823 4.39534 4.51399 4.54069 4.60723 4.62360 4.63660 4.68301 4.74072 4.75216 4.78276 4.82048 4.86265 4.89228 4.99753 5.04229 5.06048 5.08605 5.11263 5.28125 5.28990 5.34309 5.57330 5.60441 5.68725 5.91370 5.92532 5.94154 6.01373 6.11689 6.14904 6.22663 6.39191 6.88147 7.20819 7.44823 7.75891 8.95736 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.002991 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.901128 B = 9359.354164 C = 9797.386801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.055 3.945 4 C 0.059 3.941 5 N -0.544 5.544 6 C 0.028 3.972 7 C 0.089 3.911 8 H 0.069 0.931 9 C 0.148 3.852 10 N -0.719 5.719 11 C 0.693 3.307 12 O -0.643 6.643 13 N -0.628 5.628 14 C 0.116 3.884 15 C -0.125 4.125 16 C -0.104 4.104 17 C 0.039 3.961 18 H -0.016 1.016 19 C -0.538 4.538 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.914 5.914 23 Si 0.958 3.042 24 H -0.267 1.267 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.145 3.855 28 C 0.065 3.935 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.408 0.592 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.103 0.897 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.259 0.741 49 H 0.033 0.967 50 H 0.074 0.926 51 H 0.037 0.963 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 13.595 20.794 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.073 4.073 4 C -0.069 4.069 5 N -0.270 5.270 6 C -0.120 4.120 7 C -0.020 4.020 8 H 0.087 0.913 9 C 0.023 3.977 10 N -0.379 5.379 11 C 0.394 3.606 12 O -0.525 6.525 13 N -0.363 5.363 14 C -0.007 4.007 15 C -0.163 4.163 16 C -0.141 4.141 17 C 0.020 3.980 18 H 0.002 0.998 19 C -0.576 4.576 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.552 5.552 23 Si 0.783 3.217 24 H -0.191 1.191 25 H -0.215 1.215 26 H -0.193 1.193 27 C 0.022 3.978 28 C -0.064 4.064 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.247 0.753 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.121 0.879 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.052 0.948 50 H 0.092 0.908 51 H 0.055 0.945 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.377 12.699 20.824 25.482 hybrid contribution 0.471 -0.619 -1.097 1.345 sum -6.906 12.080 19.727 24.141 Atomic orbital electron populations 1.22388 0.85980 1.02779 1.01139 1.62174 1.08948 1.14421 1.42167 1.22251 0.94349 0.88932 1.01729 1.22232 0.94514 0.98946 0.91173 1.62104 1.08434 1.12699 1.43731 1.22337 0.86633 1.02568 1.00487 1.21815 0.94772 0.89447 0.96013 0.91314 1.21175 0.99977 0.94308 0.82283 1.44910 1.57539 1.31216 1.04202 1.16214 0.79865 0.83030 0.81497 1.90884 1.50371 1.25232 1.85977 1.47636 1.53174 1.26852 1.08681 1.21759 0.92735 0.86427 0.99751 1.21903 0.97304 1.02466 0.94641 1.21494 0.98705 0.97308 0.96620 1.18974 0.92901 0.92979 0.93154 0.99810 1.21498 1.32899 1.05487 0.97722 0.91957 1.25915 0.96940 0.96012 1.00183 1.70114 1.40925 1.11029 1.33142 0.85620 0.78734 0.77284 0.80079 1.19145 1.21549 1.19321 1.21624 0.95716 0.99764 0.80696 1.22132 0.93041 0.99119 0.92098 0.95512 0.91191 0.89969 0.88582 0.94207 0.94087 0.88593 0.92980 0.89984 0.94975 0.92410 0.92615 0.75283 0.88994 0.90422 0.93417 0.87871 0.93033 0.92362 0.93232 0.94819 0.90774 0.94488 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.60 127.69 1.23 1.54 16 2 N -0.55 -8.57 4.97 -921.92 -4.58 -13.15 16 3 C 0.06 0.72 5.62 86.31 0.49 1.20 16 4 C 0.06 0.80 5.61 86.31 0.48 1.28 16 5 N -0.54 -9.61 4.27 -896.54 -3.83 -13.43 16 6 C 0.03 0.50 9.01 127.69 1.15 1.65 16 7 C 0.09 1.73 2.21 44.92 0.10 1.83 16 8 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 9 C 0.15 3.97 4.63 86.38 0.40 4.37 16 10 N -0.72 -21.92 5.04 -478.54 -2.41 -24.33 16 11 C 0.69 29.70 8.29 179.06 1.49 31.18 16 12 O -0.64 -34.85 15.77 -4.00 -0.06 -34.91 16 13 N -0.63 -26.22 2.97 -836.07 -2.48 -28.70 16 14 C 0.12 3.44 6.39 86.36 0.55 3.99 16 15 C -0.13 -3.80 6.08 30.67 0.19 -3.62 16 16 C -0.10 -4.08 5.10 30.62 0.16 -3.93 16 17 C 0.04 2.04 2.26 -11.32 -0.03 2.01 16 18 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 19 C -0.54 -30.23 8.56 25.60 0.22 -30.01 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.52 5.31 84.66 0.45 0.97 16 22 N -0.91 -57.06 11.41 21.45 0.24 -56.81 16 23 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 27 C 0.14 7.49 5.44 86.51 0.47 7.96 16 28 C 0.06 1.18 4.80 86.31 0.41 1.59 16 29 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.10 0.93 8.13 -2.38 -0.02 0.91 16 33 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 1.03 8.08 -2.39 -0.02 1.01 16 36 H 0.05 1.21 6.69 -2.38 -0.02 1.19 16 37 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 38 H 0.03 0.54 8.13 -2.39 -0.02 0.52 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.64 6.81 -2.39 -0.02 1.63 16 41 H 0.41 10.42 4.76 -92.71 -0.44 9.98 16 42 H 0.09 2.15 5.65 -2.39 -0.01 2.14 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 49 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.07 4.60 5.14 -2.39 -0.01 4.59 16 51 H 0.04 0.73 7.08 -2.38 -0.02 0.72 16 52 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -74.66 390.86 -2.89 -77.55 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.44 Total: 24.65 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 7.75 Total: 22.04 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -13.05 Total: -136.42 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.06 Total: -34.91 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.66 -2.89 -77.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595499960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.424 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds