Wall clock time and date at job start Fri Apr 10 2020 18:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 C 1.53006 * 109.46713 * 119.99993 * 2 1 3 5 5 H 1.08998 * 109.78657 * 56.39141 * 4 2 1 6 6 C 1.52784 * 109.55663 * 296.16064 * 4 2 1 7 7 N 1.46897 * 109.41991 * 186.61392 * 6 4 2 8 8 C 1.46897 * 111.27009 * 62.96987 * 7 6 4 9 9 C 1.53243 * 109.33610 * 296.88992 * 8 7 6 10 10 N 1.47079 * 109.62340 * 176.87776 * 4 2 1 11 11 C 1.34779 * 120.88635 * 350.89410 * 10 4 2 12 12 O 1.21588 * 119.99671 * 353.70771 * 11 10 4 13 13 N 1.34768 * 120.00048 * 173.71247 * 11 10 4 14 14 C 1.46501 * 119.99995 * 183.87973 * 13 11 10 15 15 C 1.53041 * 109.46088 * 84.93138 * 14 13 11 16 16 C 1.53191 * 109.31360 * 181.39039 * 15 14 13 17 17 N 1.46927 * 108.77484 * 305.36362 * 16 15 14 18 18 C 1.36933 * 120.63161 * 233.58860 * 17 16 15 19 19 H 1.08000 * 119.99888 * 32.68476 * 18 17 16 20 20 C 1.38817 * 119.99998 * 212.68091 * 18 17 16 21 21 N 1.31614 * 120.00232 * 12.24443 * 20 18 17 22 22 Si 1.86800 * 119.99997 * 192.23774 * 20 18 17 23 23 H 1.48507 * 109.46889 * 60.00309 * 22 20 18 24 24 H 1.48501 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47502 * 300.00277 * 22 20 18 26 26 C 1.46926 * 118.74104 * 53.60808 * 17 16 15 27 27 C 1.53038 * 109.46238 * 205.00223 * 14 13 11 28 28 H 1.08996 * 109.47499 * 300.00295 * 1 2 3 29 29 H 1.09001 * 109.47032 * 59.99962 * 1 2 3 30 30 H 1.09004 * 109.47635 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46801 * 239.99464 * 2 1 3 32 32 H 1.09004 * 109.46813 * 176.68774 * 3 2 1 33 33 H 1.09002 * 109.46945 * 296.68520 * 3 2 1 34 34 H 1.09000 * 109.47206 * 56.68957 * 3 2 1 35 35 H 1.08999 * 109.56662 * 66.55700 * 6 4 2 36 36 H 1.09002 * 109.35684 * 306.54100 * 6 4 2 37 37 H 1.00892 * 111.00135 * 298.81373 * 7 6 4 38 38 H 1.09006 * 109.48870 * 176.93422 * 8 7 6 39 39 H 1.08992 * 109.51938 * 56.86375 * 8 7 6 40 40 H 1.09003 * 109.62904 * 294.12211 * 9 8 7 41 41 H 1.09003 * 109.62517 * 173.54480 * 9 8 7 42 42 H 0.96996 * 120.00418 * 3.88215 * 13 11 10 43 43 H 1.09001 * 109.44585 * 324.96657 * 14 13 11 44 44 H 1.09003 * 109.49435 * 301.33508 * 15 14 13 45 45 H 1.08987 * 109.49853 * 61.43534 * 15 14 13 46 46 H 1.08994 * 109.59125 * 185.57648 * 16 15 14 47 47 H 1.09005 * 109.70779 * 65.21679 * 16 15 14 48 48 H 0.97000 * 120.00404 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.59162 * 186.60844 * 26 17 16 50 50 H 1.09002 * 109.70292 * 66.24590 * 26 17 16 51 51 H 1.09001 * 109.49627 * 298.56309 * 27 14 13 52 52 H 1.08996 * 109.49988 * 58.62584 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6276 -1.7296 1.2874 6 6 1.6119 0.0509 2.4962 7 7 2.2337 -0.5530 3.6822 8 6 3.6984 -0.4565 3.6234 9 6 4.2116 -1.2554 2.4205 10 7 3.5087 -0.7890 1.2157 11 6 4.1929 -0.4279 0.1120 12 8 3.5953 -0.1497 -0.9097 13 7 5.5392 -0.3755 0.1408 14 6 6.2791 0.0983 -1.0315 15 6 6.3635 1.6260 -0.9980 16 6 7.1074 2.1198 -2.2428 17 7 8.4106 1.4449 -2.3137 18 6 9.5666 2.1701 -2.4264 19 1 9.6418 3.1421 -1.9617 20 6 10.6420 1.6558 -3.1378 21 7 10.4798 0.5956 -3.9007 22 14 12.3192 2.4686 -3.0127 23 1 12.7778 2.4423 -1.6005 24 1 13.2904 1.7330 -3.8618 25 1 12.2230 3.8762 -3.4757 26 6 8.4497 -0.0229 -2.2618 27 6 7.6906 -0.4927 -1.0168 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 3.1284 1.4430 0.0594 33 1 1.7259 1.9389 -0.9182 34 1 1.6290 1.9732 0.8588 35 1 0.5270 0.0125 2.5949 36 1 1.9324 1.0889 2.4061 37 1 1.9387 -1.5110 3.7969 38 1 4.1267 -0.8631 4.5396 39 1 3.9905 0.5882 3.5176 40 1 4.0121 -2.3160 2.5734 41 1 5.2834 -1.0945 2.3046 42 1 6.0184 -0.6514 0.9377 43 1 5.7628 -0.2170 -1.9383 44 1 5.3576 2.0457 -0.9851 45 1 6.9012 1.9411 -0.1040 46 1 7.2572 3.1973 -2.1757 47 1 6.5262 1.8866 -3.1350 48 1 11.2313 0.2360 -4.3975 49 1 9.4851 -0.3592 -2.2070 50 1 7.9784 -0.4349 -3.1541 51 1 8.2160 -0.1576 -0.1224 52 1 7.6294 -1.5809 -1.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599907262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:21 Heat of formation + Delta-G solvation = 24.012660 kcal Electronic energy + Delta-G solvation = -29945.169112 eV Core-core repulsion = 26174.223063 eV Total energy + Delta-G solvation = -3770.946048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13489 -38.52209 -37.19974 -35.83157 -34.08260 -33.68097 -31.87335 -30.16389 -30.05999 -29.30209 -27.12906 -26.22104 -24.92246 -24.23207 -22.54494 -22.14521 -21.77023 -20.32135 -19.85845 -19.07191 -17.76631 -16.73428 -16.31342 -15.88542 -15.72154 -15.48833 -14.93179 -14.70894 -14.62153 -14.23894 -13.94713 -13.57779 -13.47708 -13.42216 -13.13534 -12.96703 -12.86899 -12.51242 -12.35527 -12.25593 -12.06948 -11.58047 -11.44192 -11.32098 -11.07379 -11.01179 -10.88357 -10.76104 -10.71414 -10.68562 -10.37901 -10.25638 -10.02618 -9.81341 -9.55280 -9.50480 -8.99962 -8.60186 -8.46095 -8.19396 -6.61214 -5.79799 -3.27654 2.58398 3.30972 3.37462 3.42866 3.43811 3.83084 3.94118 4.48424 4.53555 4.69326 4.73357 4.79109 4.86113 5.01492 5.12347 5.24599 5.29915 5.35600 5.41280 5.44546 5.51395 5.58402 5.58928 5.62236 5.71024 5.82815 5.90544 5.94769 6.01332 6.08531 6.16386 6.25826 6.30971 6.34400 6.50235 6.52548 6.55824 6.59156 6.65487 6.76332 6.82183 6.89817 6.98299 7.02563 7.08469 7.31851 7.61505 7.79002 8.06968 8.47736 8.76543 9.21696 9.82973 10.42753 11.29005 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.002916 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.055280 B = 9600.237576 C =10073.557801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.132 4.132 4 C 0.135 3.865 5 H 0.064 0.936 6 C 0.041 3.959 7 N -0.684 5.684 8 C 0.043 3.957 9 C 0.073 3.927 10 N -0.632 5.632 11 C 0.707 3.293 12 O -0.572 6.572 13 N -0.741 5.741 14 C 0.168 3.832 15 C -0.137 4.137 16 C 0.148 3.852 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.178 3.822 27 C -0.146 4.146 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.339 0.661 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.387 0.613 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.020 0.980 48 H 0.255 0.745 49 H 0.087 0.913 50 H 0.022 0.978 51 H 0.057 0.943 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 -5.375 15.015 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.189 4.189 4 C 0.030 3.970 5 H 0.082 0.918 6 C -0.089 4.089 7 N -0.312 5.312 8 C -0.087 4.087 9 C -0.052 4.052 10 N -0.371 5.371 11 C 0.409 3.591 12 O -0.451 6.451 13 N -0.396 5.396 14 C 0.065 3.935 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.386 4.386 19 H 0.081 0.919 20 C -0.193 4.193 21 N -0.547 5.547 22 Si 0.734 3.266 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.052 3.948 27 C -0.186 4.186 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.157 0.843 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.223 0.777 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.038 0.962 48 H 0.065 0.935 49 H 0.105 0.895 50 H 0.040 0.960 51 H 0.076 0.924 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.294 -4.654 14.526 23.059 hybrid contribution 1.384 -0.524 -0.135 1.486 sum -15.910 -5.178 14.390 22.068 Atomic orbital electron populations 1.21984 0.96254 1.01081 1.01605 1.21746 0.93552 0.97767 0.98811 1.21983 1.02222 0.94810 0.99865 1.21755 0.78534 0.99064 0.97638 0.91847 1.22582 0.99669 0.99716 0.86975 1.60638 1.07138 1.23797 1.39620 1.22411 0.88286 1.01290 0.96760 1.22374 0.97720 0.98645 0.86492 1.47316 1.06267 1.70830 1.12732 1.15871 0.81956 0.77992 0.83250 1.90867 1.66491 1.56302 1.31406 1.45857 1.04532 1.70371 1.18842 1.20898 0.91660 0.94029 0.86961 1.22384 0.99589 0.95050 1.00761 1.20879 0.87387 0.96185 0.93441 1.44019 1.00832 1.01324 1.85281 1.19115 0.90712 1.02038 1.26689 0.91936 1.25191 0.99462 0.98450 0.96179 1.69974 1.30387 1.24780 1.29588 0.86357 0.83878 0.78917 0.77475 1.20995 1.21611 1.20817 1.20683 0.99637 0.83718 0.90813 1.22547 0.94418 0.98773 1.02903 0.93177 0.92481 0.93218 0.86163 0.91569 0.93253 0.94757 0.89520 0.89766 0.84302 0.89482 0.90261 0.91546 0.89835 0.77717 0.89990 0.92870 0.92622 0.92690 0.96190 0.93514 0.89496 0.96039 0.92393 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.93 37.16 0.33 -1.06 16 2 C -0.10 -1.17 2.17 -90.62 -0.20 -1.36 16 3 C -0.13 -1.71 7.58 37.16 0.28 -1.43 16 4 C 0.14 1.36 2.79 -67.72 -0.19 1.17 16 5 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 6 C 0.04 0.35 5.27 -3.94 -0.02 0.33 16 7 N -0.68 -5.25 6.85 -113.77 -0.78 -6.03 16 8 C 0.04 0.32 6.70 -3.70 -0.02 0.29 16 9 C 0.07 0.59 6.58 -3.60 -0.02 0.57 16 10 N -0.63 -7.01 2.95 -170.87 -0.50 -7.52 16 11 C 0.71 10.23 6.64 -86.92 -0.58 9.66 16 12 O -0.57 -9.90 10.17 5.29 0.05 -9.85 16 13 N -0.74 -10.46 5.00 -58.64 -0.29 -10.75 16 14 C 0.17 2.92 2.45 -67.89 -0.17 2.75 16 15 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 16 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 17 N -0.59 -14.79 2.97 -172.31 -0.51 -15.31 16 18 C -0.26 -6.99 9.56 -15.06 -0.14 -7.14 16 19 H 0.06 1.68 7.86 -52.49 -0.41 1.27 16 20 C 0.01 0.17 5.00 -17.43 -0.09 0.08 16 21 N -0.90 -26.05 11.25 55.49 0.62 -25.42 16 22 Si 0.90 21.51 29.57 -169.99 -5.03 16.49 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.18 4.17 5.25 -3.71 -0.02 4.15 16 27 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 28 H 0.05 0.40 6.69 -51.93 -0.35 0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.12 1.80 5.67 -52.92 -0.30 1.50 16 32 H 0.07 1.02 5.06 -51.93 -0.26 0.76 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.39 6.42 -51.93 -0.33 0.06 16 35 H 0.09 0.65 6.88 -51.93 -0.36 0.30 16 36 H 0.08 0.86 6.07 -51.93 -0.32 0.55 16 37 H 0.34 2.15 8.84 -39.30 -0.35 1.80 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.64 5.62 -51.93 -0.29 0.34 16 42 H 0.39 4.58 6.09 -40.82 -0.25 4.33 16 43 H 0.08 1.62 7.52 -51.93 -0.39 1.23 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.05 1.02 8.14 -51.94 -0.42 0.60 16 46 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.09 2.26 6.27 -51.93 -0.33 1.93 16 50 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -30.23 377.78 -10.88 -41.11 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -8.97 Total: 5.88 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.16 Total: 5.72 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -1.47 Total: -65.03 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.05 Total: -9.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.23 -10.88 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599907262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.121 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds