Wall clock time and date at job start Fri Apr 10 2020 18:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 C 1.53006 * 109.46713 * 119.99993 * 2 1 3 5 5 H 1.08998 * 109.78657 * 56.39141 * 4 2 1 6 6 C 1.52784 * 109.55663 * 296.16064 * 4 2 1 7 7 N 1.46897 * 109.41991 * 186.61392 * 6 4 2 8 8 C 1.46897 * 111.27009 * 62.96987 * 7 6 4 9 9 C 1.53243 * 109.33610 * 296.88992 * 8 7 6 10 10 N 1.47079 * 109.62340 * 176.87776 * 4 2 1 11 11 C 1.34779 * 120.88635 * 350.89410 * 10 4 2 12 12 O 1.21588 * 119.99671 * 353.70771 * 11 10 4 13 13 N 1.34768 * 120.00048 * 173.71247 * 11 10 4 14 14 C 1.46501 * 119.99995 * 183.87973 * 13 11 10 15 15 C 1.53041 * 109.46088 * 84.93138 * 14 13 11 16 16 C 1.53191 * 109.31360 * 181.39039 * 15 14 13 17 17 N 1.46927 * 108.77484 * 305.36362 * 16 15 14 18 18 C 1.36933 * 120.63161 * 233.58860 * 17 16 15 19 19 H 1.08000 * 119.99888 * 32.68476 * 18 17 16 20 20 C 1.38817 * 119.99998 * 212.68091 * 18 17 16 21 21 N 1.31614 * 120.00232 * 12.24443 * 20 18 17 22 22 Si 1.86800 * 119.99997 * 192.23774 * 20 18 17 23 23 H 1.48507 * 109.46889 * 60.00309 * 22 20 18 24 24 H 1.48501 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47502 * 300.00277 * 22 20 18 26 26 C 1.46926 * 118.74104 * 53.60808 * 17 16 15 27 27 C 1.53038 * 109.46238 * 205.00223 * 14 13 11 28 28 H 1.08996 * 109.47499 * 300.00295 * 1 2 3 29 29 H 1.09001 * 109.47032 * 59.99962 * 1 2 3 30 30 H 1.09004 * 109.47635 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46801 * 239.99464 * 2 1 3 32 32 H 1.09004 * 109.46813 * 176.68774 * 3 2 1 33 33 H 1.09002 * 109.46945 * 296.68520 * 3 2 1 34 34 H 1.09000 * 109.47206 * 56.68957 * 3 2 1 35 35 H 1.08999 * 109.56662 * 66.55700 * 6 4 2 36 36 H 1.09002 * 109.35684 * 306.54100 * 6 4 2 37 37 H 1.00892 * 111.00135 * 298.81373 * 7 6 4 38 38 H 1.09006 * 109.48870 * 176.93422 * 8 7 6 39 39 H 1.08992 * 109.51938 * 56.86375 * 8 7 6 40 40 H 1.09003 * 109.62904 * 294.12211 * 9 8 7 41 41 H 1.09003 * 109.62517 * 173.54480 * 9 8 7 42 42 H 0.96996 * 120.00418 * 3.88215 * 13 11 10 43 43 H 1.09001 * 109.44585 * 324.96657 * 14 13 11 44 44 H 1.09003 * 109.49435 * 301.33508 * 15 14 13 45 45 H 1.08987 * 109.49853 * 61.43534 * 15 14 13 46 46 H 1.08994 * 109.59125 * 185.57648 * 16 15 14 47 47 H 1.09005 * 109.70779 * 65.21679 * 16 15 14 48 48 H 0.97000 * 120.00404 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.59162 * 186.60844 * 26 17 16 50 50 H 1.09002 * 109.70292 * 66.24590 * 26 17 16 51 51 H 1.09001 * 109.49627 * 298.56309 * 27 14 13 52 52 H 1.08996 * 109.49988 * 58.62584 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6276 -1.7296 1.2874 6 6 1.6119 0.0509 2.4962 7 7 2.2337 -0.5530 3.6822 8 6 3.6984 -0.4565 3.6234 9 6 4.2116 -1.2554 2.4205 10 7 3.5087 -0.7890 1.2157 11 6 4.1929 -0.4279 0.1120 12 8 3.5953 -0.1497 -0.9097 13 7 5.5392 -0.3755 0.1408 14 6 6.2791 0.0983 -1.0315 15 6 6.3635 1.6260 -0.9980 16 6 7.1074 2.1198 -2.2428 17 7 8.4106 1.4449 -2.3137 18 6 9.5666 2.1701 -2.4264 19 1 9.6418 3.1421 -1.9617 20 6 10.6420 1.6558 -3.1378 21 7 10.4798 0.5956 -3.9007 22 14 12.3192 2.4686 -3.0127 23 1 12.7778 2.4423 -1.6005 24 1 13.2904 1.7330 -3.8618 25 1 12.2230 3.8762 -3.4757 26 6 8.4497 -0.0229 -2.2618 27 6 7.6906 -0.4927 -1.0168 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 3.1284 1.4430 0.0594 33 1 1.7259 1.9389 -0.9182 34 1 1.6290 1.9732 0.8588 35 1 0.5270 0.0125 2.5949 36 1 1.9324 1.0889 2.4061 37 1 1.9387 -1.5110 3.7969 38 1 4.1267 -0.8631 4.5396 39 1 3.9905 0.5882 3.5176 40 1 4.0121 -2.3160 2.5734 41 1 5.2834 -1.0945 2.3046 42 1 6.0184 -0.6514 0.9377 43 1 5.7628 -0.2170 -1.9383 44 1 5.3576 2.0457 -0.9851 45 1 6.9012 1.9411 -0.1040 46 1 7.2572 3.1973 -2.1757 47 1 6.5262 1.8866 -3.1350 48 1 11.2313 0.2360 -4.3975 49 1 9.4851 -0.3592 -2.2070 50 1 7.9784 -0.4349 -3.1541 51 1 8.2160 -0.1576 -0.1224 52 1 7.6294 -1.5809 -1.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599907262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:20 Heat of formation + Delta-G solvation = 3.211977 kcal Electronic energy + Delta-G solvation = -29946.071097 eV Core-core repulsion = 26174.223063 eV Total energy + Delta-G solvation = -3771.848034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.227 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.12070 -39.76840 -38.51018 -36.87966 -35.51531 -34.64919 -33.57990 -31.75051 -31.04631 -30.84329 -28.05328 -27.35456 -26.44500 -25.08857 -23.99352 -23.70367 -22.85327 -21.42199 -21.13468 -20.42755 -18.95962 -18.42206 -17.42742 -16.92778 -16.78355 -16.55162 -16.33758 -15.78911 -15.66134 -15.47321 -15.36895 -14.98430 -14.86942 -14.60365 -14.46253 -14.07704 -14.03817 -13.82795 -13.57244 -13.19596 -13.00778 -12.97556 -12.95271 -12.61689 -12.55541 -12.34913 -12.16850 -12.05503 -12.00544 -11.92645 -11.81235 -11.66986 -11.60130 -11.48984 -11.29746 -10.57226 -10.39611 -10.09951 -9.77249 -8.96359 -8.65104 -7.88722 -5.40650 1.48076 1.49481 1.56817 1.59617 2.20103 2.50618 2.87379 3.27596 3.29325 3.65354 3.82146 3.86763 3.94410 4.04186 4.04329 4.07774 4.18012 4.32480 4.34696 4.38314 4.39286 4.45001 4.63464 4.65076 4.74435 4.80109 4.81144 4.82857 4.85565 4.98968 5.00829 5.03071 5.05632 5.06888 5.14662 5.16500 5.27935 5.32635 5.41998 5.44476 5.50767 5.63734 5.66232 5.68813 5.83714 5.94571 5.97184 6.40313 6.47083 7.01977 7.14490 7.66877 7.81804 8.37393 9.18003 Molecular weight = 324.23amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.002916 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.055280 B = 9600.237576 C =10073.557801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.124 4.124 4 C 0.135 3.865 5 H 0.076 0.924 6 C 0.051 3.949 7 N -0.684 5.684 8 C 0.048 3.952 9 C 0.069 3.931 10 N -0.628 5.628 11 C 0.701 3.299 12 O -0.605 6.605 13 N -0.732 5.732 14 C 0.184 3.816 15 C -0.119 4.119 16 C 0.146 3.854 17 N -0.608 5.608 18 C -0.269 4.269 19 H 0.065 0.935 20 C -0.045 4.045 21 N -0.935 5.935 22 Si 0.971 3.029 23 H -0.274 1.274 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.184 3.816 27 C -0.128 4.128 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.351 0.649 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.402 0.598 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.005 0.995 48 H 0.251 0.749 49 H 0.059 0.941 50 H -0.006 1.006 51 H 0.068 0.932 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 -5.853 18.109 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.181 4.181 4 C 0.030 3.970 5 H 0.094 0.906 6 C -0.080 4.080 7 N -0.313 5.313 8 C -0.082 4.082 9 C -0.055 4.055 10 N -0.366 5.366 11 C 0.404 3.596 12 O -0.486 6.486 13 N -0.389 5.389 14 C 0.078 3.922 15 C -0.160 4.160 16 C 0.020 3.980 17 N -0.332 5.332 18 C -0.399 4.399 19 H 0.083 0.917 20 C -0.241 4.241 21 N -0.580 5.580 22 Si 0.798 3.202 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.203 1.203 26 C 0.057 3.943 27 C -0.167 4.167 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.170 0.830 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.240 0.760 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.023 0.977 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.012 0.988 51 H 0.087 0.913 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.174 -5.149 17.693 25.881 hybrid contribution 1.568 -0.372 -1.117 1.961 sum -16.606 -5.521 16.576 24.104 Atomic orbital electron populations 1.21910 0.94169 1.02043 1.02117 1.21559 0.95265 0.96516 0.98274 1.21881 1.00497 0.96010 0.99718 1.21872 0.77849 0.99734 0.97524 0.90625 1.22469 1.00597 0.98478 0.86411 1.60624 1.07287 1.24675 1.38693 1.22406 0.88149 1.00391 0.97283 1.22627 0.97817 0.99741 0.85295 1.47370 1.06802 1.69803 1.12611 1.16034 0.81837 0.77998 0.83768 1.90889 1.67080 1.57586 1.33055 1.45474 1.04607 1.70514 1.18292 1.20423 0.91137 0.93218 0.87385 1.22147 0.99076 0.95743 0.98984 1.20948 0.86331 0.96186 0.94538 1.44267 1.01387 1.01939 1.85567 1.19453 0.91714 1.02357 1.26424 0.91743 1.25964 1.02947 0.99172 0.96012 1.70144 1.31087 1.26227 1.30580 0.85302 0.79321 0.77890 0.77645 1.19953 1.21957 1.20275 1.20486 0.98450 0.83114 0.92206 1.22254 0.94138 0.99981 1.00358 0.91438 0.93195 0.92024 0.89745 0.94147 0.94809 0.93124 0.87907 0.91418 0.82995 0.87125 0.91802 0.89697 0.89284 0.76002 0.92650 0.92576 0.91930 0.92645 0.97680 0.93947 0.92279 0.98819 0.91318 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.93 71.98 0.64 -1.80 16 2 C -0.10 -2.21 2.17 -10.79 -0.02 -2.24 16 3 C -0.12 -3.22 7.58 71.98 0.55 -2.68 16 4 C 0.14 2.45 2.79 44.81 0.13 2.58 16 5 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 6 C 0.05 0.74 5.27 86.23 0.45 1.19 16 7 N -0.68 -8.18 6.85 -513.85 -3.52 -11.70 16 8 C 0.05 0.55 6.70 86.39 0.58 1.13 16 9 C 0.07 0.91 6.58 86.35 0.57 1.48 16 10 N -0.63 -12.82 2.95 -812.78 -2.40 -15.22 16 11 C 0.70 19.88 6.64 179.06 1.19 21.07 16 12 O -0.61 -21.45 10.17 -3.99 -0.04 -21.49 16 13 N -0.73 -19.83 5.00 -457.69 -2.29 -22.12 16 14 C 0.18 6.36 2.45 45.02 0.11 6.47 16 15 C -0.12 -4.36 5.65 30.67 0.17 -4.18 16 16 C 0.15 6.49 6.52 86.36 0.56 7.05 16 17 N -0.61 -31.11 2.97 -699.08 -2.08 -33.19 16 18 C -0.27 -14.92 9.56 84.04 0.80 -14.11 16 19 H 0.06 3.48 7.86 -2.91 -0.02 3.45 16 20 C -0.05 -2.52 5.00 84.86 0.42 -2.09 16 21 N -0.94 -55.40 11.25 21.65 0.24 -55.16 16 22 Si 0.97 44.56 29.57 68.60 2.03 46.59 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 C 0.18 8.86 5.25 86.36 0.45 9.32 16 27 C -0.13 -4.59 5.55 30.67 0.17 -4.42 16 28 H 0.07 0.91 6.69 -2.39 -0.02 0.89 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 2.60 5.67 -18.05 -0.10 2.50 16 32 H 0.04 1.25 5.06 -2.38 -0.01 1.24 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.11 6.42 -2.39 -0.02 1.10 16 35 H 0.10 1.18 6.88 -2.39 -0.02 1.17 16 36 H 0.07 1.24 6.07 -2.39 -0.01 1.22 16 37 H 0.35 3.04 8.84 -89.70 -0.79 2.25 16 38 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 1.07 5.62 -2.39 -0.01 1.06 16 42 H 0.40 8.56 6.09 -92.71 -0.56 8.00 16 43 H 0.06 2.25 7.52 -2.39 -0.02 2.23 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.05 2.40 7.93 -2.39 -0.02 2.38 16 47 H 0.01 0.24 8.14 -2.38 -0.02 0.23 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 49 H 0.06 3.17 6.27 -2.39 -0.01 3.15 16 50 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 51 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -68.03 377.78 -1.80 -69.83 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.52 Total: 23.71 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 6.78 Total: 18.76 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -10.04 Total: -137.39 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.04 Total: -21.49 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.03 -1.80 -69.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599907262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.040 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds