Wall clock time and date at job start Fri Apr 10 2020 18:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.41208 * 2 1 4 4 C 1.54916 * 110.36599 * 237.70711 * 2 1 3 5 5 C 1.55155 * 101.58079 * 204.15151 * 4 2 1 6 6 H 1.09000 * 110.87050 * 277.07154 * 5 4 2 7 7 N 1.46901 * 110.72104 * 153.86767 * 5 4 2 8 8 C 1.54327 * 102.94150 * 35.50076 * 5 4 2 9 9 N 1.47016 * 107.27138 * 337.81056 * 8 5 4 10 10 C 1.34777 * 125.64691 * 178.98000 * 9 8 5 11 11 O 1.21352 * 119.99940 * 179.97438 * 10 9 8 12 12 C 1.49455 * 120.00046 * 359.96433 * 10 9 8 13 13 O 1.21349 * 119.99820 * 6.39848 * 12 10 9 14 14 N 1.34775 * 119.99901 * 186.38943 * 12 10 9 15 15 C 1.47080 * 120.88402 * 7.94109 * 14 12 10 16 16 C 1.53696 * 108.27786 * 128.74582 * 15 14 12 17 17 N 1.46904 * 109.25269 * 54.08753 * 16 15 14 18 18 C 1.46904 * 111.00015 * 172.60747 * 17 16 15 19 19 C 1.50700 * 109.47186 * 59.56607 * 18 17 16 20 20 H 1.08005 * 119.99928 * 355.37756 * 19 18 17 21 21 C 1.37881 * 119.99865 * 175.38381 * 19 18 17 22 22 N 1.31509 * 119.99876 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99852 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47327 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46923 * 119.99582 * 23 21 19 26 26 H 1.48493 * 109.47168 * 239.99758 * 23 21 19 27 27 C 1.46898 * 111.26780 * 296.75161 * 17 16 15 28 28 C 1.47085 * 120.88073 * 188.21281 * 14 12 10 29 29 H 1.08994 * 109.47405 * 299.15765 * 1 2 3 30 30 H 1.08997 * 109.47254 * 59.15834 * 1 2 3 31 31 H 1.09008 * 109.46953 * 179.15416 * 1 2 3 32 32 H 1.09006 * 111.00332 * 86.07662 * 4 2 1 33 33 H 1.08998 * 111.00560 * 322.22749 * 4 2 1 34 34 H 1.00903 * 110.99769 * 185.02783 * 7 5 4 35 35 H 1.00902 * 110.99416 * 308.97368 * 7 5 4 36 36 H 1.09004 * 109.87887 * 97.22668 * 8 5 4 37 37 H 1.08998 * 109.88363 * 218.38700 * 8 5 4 38 38 H 1.08997 * 109.62875 * 248.52143 * 15 14 12 39 39 H 1.09005 * 109.62510 * 9.10413 * 15 14 12 40 40 H 1.08995 * 109.65303 * 294.08245 * 16 15 14 41 41 H 1.09000 * 109.42332 * 173.95135 * 16 15 14 42 42 H 1.08994 * 109.47293 * 179.57152 * 18 17 16 43 43 H 1.08999 * 109.46844 * 299.56633 * 18 17 16 44 44 H 0.97001 * 119.99890 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.49432 * 303.14745 * 27 17 16 46 46 H 1.09000 * 109.49225 * 183.06325 * 27 17 16 47 47 H 1.08998 * 109.62470 * 350.90052 * 28 14 12 48 48 H 1.09002 * 109.62625 * 111.28837 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2277 5 6 3.4778 -1.1997 -0.7343 6 1 4.1968 -0.3922 -0.8722 7 7 3.9262 -2.4161 -1.4251 8 6 3.2493 -1.4768 0.7666 9 7 2.0431 -0.7385 1.1682 10 6 1.4972 -0.7364 2.4005 11 8 0.4959 -0.0868 2.6194 12 6 2.1251 -1.5343 3.4972 13 8 3.1878 -2.0899 3.3115 14 7 1.5110 -1.6366 4.6926 15 6 0.1476 -1.1204 4.8876 16 6 -0.7039 -2.2340 5.5176 17 7 -0.0432 -2.7178 6.7373 18 6 -0.9055 -3.6581 7.4655 19 6 -1.2261 -4.8347 6.5801 20 1 -0.8916 -4.8446 5.5532 21 6 -1.9464 -5.8983 7.0810 22 7 -2.3532 -5.8863 8.3315 23 14 -2.3444 -7.3564 5.9832 24 1 -1.7770 -7.1269 4.6302 25 1 -1.7542 -8.5890 6.5643 26 1 -3.8176 -7.5127 5.8827 27 6 1.2590 -3.3255 6.4326 28 6 2.1887 -2.2621 5.8384 29 1 -0.3634 0.5007 0.8974 30 1 -0.3633 0.5268 -0.8823 31 1 -0.3633 -1.0276 -0.0152 32 1 2.1398 -0.1263 -2.1002 33 1 1.4511 -1.6480 -1.4410 34 1 4.8045 -2.7419 -1.0501 35 1 3.2231 -3.1384 -1.3786 36 1 3.1013 -2.5446 0.9281 37 1 4.1064 -1.1280 1.3427 38 1 0.1748 -0.2561 5.5511 39 1 -0.2764 -0.8336 3.9252 40 1 -0.8116 -3.0572 4.8113 41 1 -1.6882 -1.8392 5.7693 42 1 -0.3892 -4.0065 8.3600 43 1 -1.8298 -3.1563 7.7518 44 1 -2.8603 -6.6344 8.6838 45 1 1.1240 -4.1335 5.7136 46 1 1.6983 -3.7222 7.3479 47 1 3.1147 -2.7305 5.5049 48 1 2.4113 -1.5049 6.5901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601580972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:37 Heat of formation + Delta-G solvation = -33.167393 kcal Electronic energy + Delta-G solvation = -29014.905114 eV Core-core repulsion = 25105.646458 eV Total energy + Delta-G solvation = -3909.258656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.13607 -39.48590 -37.96889 -37.56794 -34.66047 -34.04030 -32.34958 -32.10035 -30.70206 -28.94744 -28.37652 -26.29978 -25.65924 -24.51903 -23.20495 -22.41229 -21.54908 -21.13463 -19.93586 -18.82341 -17.47081 -17.07756 -16.63007 -16.28097 -16.15221 -15.87930 -15.25485 -14.83649 -14.66748 -14.43856 -14.35177 -14.16558 -13.90716 -13.67667 -13.54534 -13.41443 -12.91795 -12.73922 -12.65887 -12.41807 -12.04760 -11.92383 -11.86235 -11.52592 -11.25926 -11.17570 -11.03696 -10.98514 -10.82352 -10.67193 -10.62299 -10.26877 -9.95147 -9.70442 -9.35639 -9.11248 -8.81750 -8.53336 -8.48691 -7.27939 -6.08661 -4.18025 1.41776 2.17516 3.18207 3.22289 3.30694 3.31045 3.34059 3.95810 4.04256 4.28416 4.35203 4.35820 4.63106 4.81422 4.85431 4.94656 5.04333 5.21731 5.27927 5.38087 5.41676 5.46789 5.50718 5.53487 5.63228 5.66833 5.78158 5.81957 5.84356 5.91455 5.98268 6.20011 6.23601 6.43013 6.58830 6.60124 6.62138 6.70066 6.95936 7.00509 7.18472 7.34590 7.46019 7.63917 7.83340 7.94209 8.02237 8.16539 8.22578 8.91961 9.49391 10.96511 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.003239 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.198305 B = 8642.160884 C = 9107.567030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.132 3.868 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.076 3.924 6 H 0.099 0.901 7 N -0.834 5.834 8 C 0.074 3.926 9 N -0.588 5.588 10 C 0.525 3.475 11 O -0.506 6.506 12 C 0.504 3.496 13 O -0.533 6.533 14 N -0.570 5.570 15 C 0.077 3.923 16 C 0.050 3.950 17 N -0.542 5.542 18 C 0.187 3.813 19 C -0.551 4.551 20 H 0.056 0.944 21 C 0.066 3.934 22 N -0.889 5.889 23 Si 0.888 3.112 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.052 3.948 28 C 0.112 3.888 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.347 0.653 35 H 0.344 0.656 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.262 0.738 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.706 11.742 -17.125 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.030 3.970 3 H 0.100 0.900 4 C -0.162 4.162 5 C -0.037 4.037 6 H 0.117 0.883 7 N -0.363 5.363 8 C -0.051 4.051 9 N -0.323 5.323 10 C 0.310 3.690 11 O -0.383 6.383 12 C 0.286 3.714 13 O -0.412 6.412 14 N -0.302 5.302 15 C -0.045 4.045 16 C -0.080 4.080 17 N -0.266 5.266 18 C 0.062 3.938 19 C -0.590 4.590 20 H 0.074 0.926 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.077 4.077 28 C -0.010 4.010 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.107 0.893 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.707 12.540 -17.225 23.845 hybrid contribution -0.534 -2.232 0.107 2.297 sum 10.173 10.308 -17.117 22.422 Atomic orbital electron populations 1.22207 0.93198 1.03101 1.04065 1.22074 0.95867 0.95630 0.83432 0.89968 1.22961 0.95200 1.01007 0.96991 1.22644 0.97152 0.94371 0.89486 0.88263 1.58942 1.08789 1.08172 1.60433 1.23192 0.87725 0.97441 0.96722 1.48281 1.28065 1.47497 1.08473 1.20025 0.83982 0.82564 0.82461 1.90495 1.24238 1.43022 1.80553 1.19880 0.85580 0.82231 0.83693 1.90697 1.22831 1.46542 1.81092 1.48096 1.16901 1.56053 1.09159 1.23122 0.79881 0.96840 1.04633 1.22374 0.97045 0.96061 0.92485 1.62524 1.03880 1.39593 1.20619 1.19771 0.91870 0.88668 0.93510 1.21772 1.35344 1.03862 0.98045 0.92607 1.24954 0.95553 0.98275 0.94912 1.69945 1.37398 1.31676 1.13750 0.86599 0.78192 0.82779 0.80818 1.19966 1.20872 1.20836 1.22212 0.90992 0.94415 1.00129 1.22019 0.96203 0.96472 0.86316 0.89152 0.91654 0.92414 0.89075 0.90084 0.83996 0.84247 0.90739 0.90113 0.91003 0.85350 0.94086 0.90186 0.94666 0.95137 0.92791 0.93920 0.90128 0.89342 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.71 37.16 0.32 -1.27 16 2 C 0.13 1.17 3.77 -66.42 -0.25 0.92 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -0.85 6.15 -24.58 -0.15 -1.00 16 5 C 0.08 0.54 4.11 -65.88 -0.27 0.27 16 6 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 7 N -0.83 -5.47 9.32 -3.11 -0.03 -5.50 16 8 C 0.07 0.73 5.23 -3.07 -0.02 0.71 16 9 N -0.59 -6.70 3.24 -163.55 -0.53 -7.23 16 10 C 0.53 7.50 7.56 -11.58 -0.09 7.41 16 11 O -0.51 -7.65 10.85 5.50 0.06 -7.59 16 12 C 0.50 8.03 7.70 -11.58 -0.09 7.94 16 13 O -0.53 -8.93 13.64 5.50 0.07 -8.85 16 14 N -0.57 -9.37 3.00 -172.68 -0.52 -9.88 16 15 C 0.08 1.25 6.14 -3.36 -0.02 1.23 16 16 C 0.05 0.96 5.17 -3.46 -0.02 0.94 16 17 N -0.54 -11.38 4.83 -235.47 -1.14 -12.51 16 18 C 0.19 4.72 5.11 -4.97 -0.03 4.70 16 19 C -0.55 -14.99 7.76 -34.44 -0.27 -15.26 16 20 H 0.06 1.53 5.88 -52.48 -0.31 1.22 16 21 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 22 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 23 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 27 C 0.05 1.00 5.24 -3.70 -0.02 0.98 16 28 C 0.11 1.81 6.61 -3.60 -0.02 1.78 16 29 H 0.09 1.05 5.89 -51.93 -0.31 0.75 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 34 H 0.35 1.95 9.07 -39.29 -0.36 1.59 16 35 H 0.34 2.18 8.86 -39.29 -0.35 1.84 16 36 H 0.07 0.82 7.61 -51.93 -0.40 0.42 16 37 H 0.08 0.85 7.57 -51.93 -0.39 0.45 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.13 2.07 4.43 -54.26 -0.24 1.83 16 40 H 0.04 0.88 6.63 -51.93 -0.34 0.54 16 41 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 42 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 43 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.04 0.92 7.10 -51.93 -0.37 0.55 16 46 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 47 H 0.09 1.38 7.05 -51.93 -0.37 1.01 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -30.56 369.42 -9.42 -39.98 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.61 Total: 3.69 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -1.01 Total: 11.10 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -1.48 Total: -60.27 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.13 Total: -16.44 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.56 -9.42 -39.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601580972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.814 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds