Wall clock time and date at job start Fri Apr 10 2020 18:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.41208 * 2 1 4 4 C 1.54916 * 110.36599 * 237.70711 * 2 1 3 5 5 C 1.55155 * 101.58079 * 204.15151 * 4 2 1 6 6 H 1.09000 * 110.87050 * 277.07154 * 5 4 2 7 7 N 1.46901 * 110.72104 * 153.86767 * 5 4 2 8 8 C 1.54327 * 102.94150 * 35.50076 * 5 4 2 9 9 N 1.47016 * 107.27138 * 337.81056 * 8 5 4 10 10 C 1.34777 * 125.64691 * 178.98000 * 9 8 5 11 11 O 1.21352 * 119.99940 * 179.97438 * 10 9 8 12 12 C 1.49455 * 120.00046 * 359.96433 * 10 9 8 13 13 O 1.21349 * 119.99820 * 6.39848 * 12 10 9 14 14 N 1.34775 * 119.99901 * 186.38943 * 12 10 9 15 15 C 1.47080 * 120.88402 * 7.94109 * 14 12 10 16 16 C 1.53696 * 108.27786 * 128.74582 * 15 14 12 17 17 N 1.46904 * 109.25269 * 54.08753 * 16 15 14 18 18 C 1.46904 * 111.00015 * 172.60747 * 17 16 15 19 19 C 1.50700 * 109.47186 * 59.56607 * 18 17 16 20 20 H 1.08005 * 119.99928 * 355.37756 * 19 18 17 21 21 C 1.37881 * 119.99865 * 175.38381 * 19 18 17 22 22 N 1.31509 * 119.99876 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99852 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47327 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46923 * 119.99582 * 23 21 19 26 26 H 1.48493 * 109.47168 * 239.99758 * 23 21 19 27 27 C 1.46898 * 111.26780 * 296.75161 * 17 16 15 28 28 C 1.47085 * 120.88073 * 188.21281 * 14 12 10 29 29 H 1.08994 * 109.47405 * 299.15765 * 1 2 3 30 30 H 1.08997 * 109.47254 * 59.15834 * 1 2 3 31 31 H 1.09008 * 109.46953 * 179.15416 * 1 2 3 32 32 H 1.09006 * 111.00332 * 86.07662 * 4 2 1 33 33 H 1.08998 * 111.00560 * 322.22749 * 4 2 1 34 34 H 1.00903 * 110.99769 * 185.02783 * 7 5 4 35 35 H 1.00902 * 110.99416 * 308.97368 * 7 5 4 36 36 H 1.09004 * 109.87887 * 97.22668 * 8 5 4 37 37 H 1.08998 * 109.88363 * 218.38700 * 8 5 4 38 38 H 1.08997 * 109.62875 * 248.52143 * 15 14 12 39 39 H 1.09005 * 109.62510 * 9.10413 * 15 14 12 40 40 H 1.08995 * 109.65303 * 294.08245 * 16 15 14 41 41 H 1.09000 * 109.42332 * 173.95135 * 16 15 14 42 42 H 1.08994 * 109.47293 * 179.57152 * 18 17 16 43 43 H 1.08999 * 109.46844 * 299.56633 * 18 17 16 44 44 H 0.97001 * 119.99890 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.49432 * 303.14745 * 27 17 16 46 46 H 1.09000 * 109.49225 * 183.06325 * 27 17 16 47 47 H 1.08998 * 109.62470 * 350.90052 * 28 14 12 48 48 H 1.09002 * 109.62625 * 111.28837 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2277 5 6 3.4778 -1.1997 -0.7343 6 1 4.1968 -0.3922 -0.8722 7 7 3.9262 -2.4161 -1.4251 8 6 3.2493 -1.4768 0.7666 9 7 2.0431 -0.7385 1.1682 10 6 1.4972 -0.7364 2.4005 11 8 0.4959 -0.0868 2.6194 12 6 2.1251 -1.5343 3.4972 13 8 3.1878 -2.0899 3.3115 14 7 1.5110 -1.6366 4.6926 15 6 0.1476 -1.1204 4.8876 16 6 -0.7039 -2.2340 5.5176 17 7 -0.0432 -2.7178 6.7373 18 6 -0.9055 -3.6581 7.4655 19 6 -1.2261 -4.8347 6.5801 20 1 -0.8916 -4.8446 5.5532 21 6 -1.9464 -5.8983 7.0810 22 7 -2.3532 -5.8863 8.3315 23 14 -2.3444 -7.3564 5.9832 24 1 -1.7770 -7.1269 4.6302 25 1 -1.7542 -8.5890 6.5643 26 1 -3.8176 -7.5127 5.8827 27 6 1.2590 -3.3255 6.4326 28 6 2.1887 -2.2621 5.8384 29 1 -0.3634 0.5007 0.8974 30 1 -0.3633 0.5268 -0.8823 31 1 -0.3633 -1.0276 -0.0152 32 1 2.1398 -0.1263 -2.1002 33 1 1.4511 -1.6480 -1.4410 34 1 4.8045 -2.7419 -1.0501 35 1 3.2231 -3.1384 -1.3786 36 1 3.1013 -2.5446 0.9281 37 1 4.1064 -1.1280 1.3427 38 1 0.1748 -0.2561 5.5511 39 1 -0.2764 -0.8336 3.9252 40 1 -0.8116 -3.0572 4.8113 41 1 -1.6882 -1.8392 5.7693 42 1 -0.3892 -4.0065 8.3600 43 1 -1.8298 -3.1563 7.7518 44 1 -2.8603 -6.6344 8.6838 45 1 1.1240 -4.1335 5.7136 46 1 1.6983 -3.7222 7.3479 47 1 3.1147 -2.7305 5.5049 48 1 2.4113 -1.5049 6.5901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601580972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:36 Heat of formation + Delta-G solvation = -56.814981 kcal Electronic energy + Delta-G solvation = -29015.930551 eV Core-core repulsion = 25105.646458 eV Total energy + Delta-G solvation = -3910.284092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.23277 -40.59339 -39.06282 -38.97747 -36.16228 -34.87535 -34.32228 -32.93564 -32.16442 -30.12028 -29.59697 -27.66848 -26.81701 -25.86931 -24.64028 -23.99581 -22.68538 -21.95020 -21.22103 -20.08701 -18.67894 -18.37442 -17.96978 -17.69971 -17.22796 -16.81088 -16.63258 -16.21428 -16.09178 -15.82966 -15.49653 -15.39617 -15.06254 -14.95003 -14.78277 -14.39262 -14.33534 -13.93740 -13.64962 -13.63556 -13.26774 -13.14686 -13.00541 -12.89707 -12.69453 -12.59342 -12.52464 -12.29303 -12.23537 -12.02725 -11.86979 -11.84332 -11.71604 -11.63269 -10.65970 -10.29651 -10.05919 -9.85325 -9.67787 -9.11628 -8.21217 -6.40338 0.24099 1.10935 1.30888 1.32719 1.43461 1.99809 2.20548 2.32219 2.96366 3.04134 3.27160 3.36546 3.58774 3.67293 3.93545 4.03058 4.04554 4.11554 4.21229 4.25218 4.29359 4.33382 4.47596 4.54018 4.60621 4.66014 4.73636 4.78129 4.85743 4.96886 4.97527 5.00258 5.08793 5.13085 5.16069 5.18916 5.27678 5.31786 5.45413 5.68426 5.89772 5.98520 6.06127 6.14612 6.19439 6.39202 6.46378 6.49868 6.79097 6.82993 7.31198 8.81688 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.003239 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.198305 B = 8642.160884 C = 9107.567030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.127 3.873 3 H 0.098 0.902 4 C -0.114 4.114 5 C 0.088 3.912 6 H 0.114 0.886 7 N -0.834 5.834 8 C 0.073 3.927 9 N -0.583 5.583 10 C 0.520 3.480 11 O -0.520 6.520 12 C 0.501 3.499 13 O -0.543 6.543 14 N -0.579 5.579 15 C 0.093 3.907 16 C 0.053 3.947 17 N -0.537 5.537 18 C 0.201 3.799 19 C -0.559 4.559 20 H 0.049 0.951 21 C 0.016 3.984 22 N -0.922 5.922 23 Si 0.954 3.046 24 H -0.274 1.274 25 H -0.276 1.276 26 H -0.275 1.275 27 C 0.056 3.944 28 C 0.122 3.878 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.352 0.648 35 H 0.345 0.655 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.015 0.985 41 H 0.079 0.921 42 H 0.013 0.987 43 H 0.009 0.991 44 H 0.266 0.734 45 H 0.015 0.985 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.682 12.496 -19.570 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.116 0.884 4 C -0.152 4.152 5 C -0.025 4.025 6 H 0.132 0.868 7 N -0.363 5.363 8 C -0.052 4.052 9 N -0.316 5.316 10 C 0.304 3.696 11 O -0.398 6.398 12 C 0.284 3.716 13 O -0.422 6.422 14 N -0.311 5.311 15 C -0.028 4.028 16 C -0.076 4.076 17 N -0.261 5.261 18 C 0.074 3.926 19 C -0.597 4.597 20 H 0.067 0.933 21 C -0.184 4.184 22 N -0.561 5.561 23 Si 0.779 3.221 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.074 4.074 28 C 0.000 4.000 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.153 0.847 40 H 0.034 0.966 41 H 0.097 0.903 42 H 0.031 0.969 43 H 0.027 0.973 44 H 0.075 0.925 45 H 0.033 0.967 46 H 0.100 0.900 47 H 0.115 0.885 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.714 13.299 -19.710 26.506 hybrid contribution -0.789 -2.457 0.830 2.711 sum 10.925 10.843 -18.880 24.359 Atomic orbital electron populations 1.22144 0.93667 1.02226 1.04107 1.22352 0.95547 0.96465 0.83051 0.88410 1.22948 0.94562 1.01011 0.96661 1.22630 0.97713 0.94991 0.87198 0.86832 1.58981 1.09158 1.08205 1.59950 1.23324 0.86715 0.96317 0.98814 1.48419 1.28120 1.46977 1.08118 1.19725 0.84132 0.82673 0.83084 1.90482 1.24757 1.43714 1.80893 1.20274 0.85476 0.82034 0.83828 1.90685 1.23291 1.46927 1.81272 1.48165 1.16969 1.56398 1.09585 1.22982 0.79431 0.95559 1.04857 1.22382 0.97875 0.96212 0.91139 1.62467 1.04024 1.38219 1.21394 1.19440 0.91371 0.88763 0.93021 1.21958 1.35218 1.04671 0.97899 0.93290 1.25751 0.95426 1.01029 0.96227 1.70047 1.38084 1.32721 1.15271 0.85571 0.78205 0.79418 0.78863 1.19859 1.20118 1.20020 1.22210 0.90654 0.94811 0.99691 1.21910 0.95328 0.96013 0.86709 0.91439 0.89153 0.93776 0.86708 0.90463 0.83361 0.84122 0.92210 0.90800 0.89734 0.84692 0.96623 0.90278 0.96897 0.97263 0.92455 0.96664 0.89970 0.88539 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 8.71 71.98 0.63 -2.21 16 2 C 0.13 1.96 3.77 45.47 0.17 2.13 16 3 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.11 -1.22 6.15 31.99 0.20 -1.03 16 5 C 0.09 1.01 4.11 46.10 0.19 1.20 16 6 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 7 N -0.83 -9.04 9.32 -163.76 -1.53 -10.56 16 8 C 0.07 1.33 5.23 86.73 0.45 1.78 16 9 N -0.58 -12.50 3.24 -789.71 -2.56 -15.06 16 10 C 0.52 14.46 7.56 87.27 0.66 15.12 16 11 O -0.52 -15.37 10.85 -3.25 -0.04 -15.41 16 12 C 0.50 15.66 7.70 87.27 0.67 16.33 16 13 O -0.54 -17.83 13.64 -3.24 -0.04 -17.87 16 14 N -0.58 -18.69 3.00 -818.60 -2.46 -21.14 16 15 C 0.09 3.00 6.14 86.50 0.53 3.53 16 16 C 0.05 2.09 5.17 86.54 0.45 2.54 16 17 N -0.54 -23.02 4.83 -898.88 -4.34 -27.36 16 18 C 0.20 10.48 5.11 85.56 0.44 10.92 16 19 C -0.56 -31.15 7.76 25.60 0.20 -30.95 16 20 H 0.05 2.76 5.88 -2.91 -0.02 2.74 16 21 C 0.02 0.88 5.46 84.66 0.46 1.34 16 22 N -0.92 -54.51 13.29 21.45 0.28 -54.22 16 23 Si 0.95 44.29 29.54 68.60 2.03 46.31 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.06 2.16 5.24 86.38 0.45 2.62 16 28 C 0.12 3.86 6.61 86.35 0.57 4.43 16 29 H 0.07 1.51 5.89 -2.39 -0.01 1.50 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.08 0.93 7.92 -2.39 -0.02 0.91 16 34 H 0.35 3.26 9.07 -89.69 -0.81 2.44 16 35 H 0.35 3.74 8.86 -89.69 -0.79 2.95 16 36 H 0.06 1.27 7.61 -2.38 -0.02 1.25 16 37 H 0.07 1.46 7.57 -2.39 -0.02 1.44 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.14 4.30 4.43 -39.36 -0.17 4.12 16 40 H 0.02 0.69 6.63 -2.39 -0.02 0.67 16 41 H 0.08 3.09 8.11 -2.39 -0.02 3.07 16 42 H 0.01 0.72 8.07 -2.39 -0.02 0.70 16 43 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.02 0.67 7.10 -2.39 -0.02 0.65 16 46 H 0.08 3.13 8.06 -2.39 -0.02 3.11 16 47 H 0.10 2.92 7.05 -2.39 -0.02 2.90 16 48 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -66.33 369.42 -3.36 -69.69 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.78 Total: 17.88 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.07 Total: 27.75 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -10.60 Total: -128.36 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.08 Total: -33.28 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.33 -3.36 -69.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601580972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.875 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds